|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10054#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 3028 fasta sequence
[TTCAGCGAGCCAGAGAGGAAACGAACCGATCGATCAGGCCGTCGCTCCGCTCGCCGCCGCGCGACGCGACGCGACGCGACACGCCGGAGACGGACGACGAGCGCTTTGCCTTCCCCGCGCGCGCGCGCGCGCGCACGGAGGCGGACGCTGGTCGGTTTGGTCGGGTGCGACCGGGAACGGCGGCCATGGCGCGCGGCGGGGGCGGCGGGTGCTGCCCGCCGATGGATCTGATGCGGTCGGAGGCGATGCAGCTGGTGCAGGTCATCATCCCCACGGAGTCGGCGCACCTCACCGTCTCCTACCTCGGCGAACTCGGCCTCCTCCAGTTGAAAGACCTTAACGCAGACAAGAGTCCTTTTCAACGAACATATGCTGCCCAGATAAAAAGGTGTGGTGAAATGGCTCGCAAATTAAGATTTTTCAAAGAACAAATGTCCAAAGCTGGCATATCAACTTCTGCACAATTAACTGAAATTTCGTTGGACTTTGATGATTTGGAGATAAAGCTTGGAGAACTGGAAGCTGAACTAGCTGAAGTTAATGCAAACAATGAAAAGTTAAAGCGGACCTACAATGAGCTGTTGGAGTACAGTACTGTTCTTCAAAAGGCTGGTGAATTTTTCTATTCGGCTCAAAGAAGTGCTGCGGCGCAATAGAGAGAAATGGAGGCAAATCAATCTGGTGAGAGTTCACTGGAGAGCCCTCTGCTGGAGCAGGATACGTTAACAGATGCATCAAAACAAGTGAAGCTTGGATCATTGAGTGGTCTTGTACCAAAGGAAAAGGCAATGGCTTTTGAACGCATCTTATTCCGTGCCACGAGGGGAAACATTTTCCTCAGACAAGAGTCTGTTGATGAACCTGTCACTGACCCAGTCTCTGGAGAAAAGGTTGCCAAAAATGCATTTGTTATTTTCTACTCTGGGGATAGAGCAAAAGCCAAAATTCTGAAGATATGTGATGCGTTCAACGCAAATCGCTACCCATTTCCAGAAGATGTTGCTAGACAATTACATGCTGTTCAGGAGGTATCTGCAAAGATATCAGAGTTAAAGGCAACAATTGACATGGGATTAGCACATCGTGACAATATATTGAAAAATATCGCGTCTGAGTTTGAGAATTGGAACCGTCTGGCAAATAAGGAAAAAATAATTTACCACACTTTGAACATGTTGAGTGTTGATGTGACAAAGAAATGCTTAGTTGGTGAGGGCTGGAGTCCAGTTTTTGCAACAACTCAGATCCAAGATGCGCTCCAGCGAGCTACTCTTGATAGCAAATCCCAAGTTGGTTCAATTTTTCAAGTTCTCAACACAACAGAATCTCCCCCGACATATTTCCAGACAAATAAGTTCACTTCGGCTTTCCAGGAAATTGTTGATGCATACGGGATAGCCAAATATCAAGAAGCAAACCCTGGTGTATTCACTATTGTCACTTTTCCTTTCTTATTTGCTGTCATGTTTGGAGATTGGGGACATGGAATTTGCATATTGGTTTCGACACTCTATCTGATAATCCGAGAGAAGAAATTTGCTTCACAGAAACTTGGAGACATAATGGAGATGATGTTTGGTGGGCGCTATGTAATTATAATGATGGCACTCTTTTCAATCTATACAGGATTAATATACAATGAATTTTTCTCTGTTCCATTTGAGCTTTTTGGTAAATCTGCTTATGCATGCCGTGATCCTTCTTGTGGAGATGCTGCAACAGAAGGATTACTCAAGGTAAGACGGACATACCCTTTTGGTGTGGACCCTGTATGGCATGGCAGCCGCAGCGAGTTGCCGTTTCTCAACTCACTGAAGATGAAGATGTCAATTCTTCTTGGAGTTGCACAAATGAACCTTGGAATTGTGATTAGTTACTTTAATGCGAAATTCTTCAGGAACAGTGTTAATGTGTGGTACCAGTTCATCCCCCAGCTGATCTTCTTGAACAGCTTATTTGGTTACTTATCCATGCTCATCATTATCAAGTGGAGCACGGGGGCAAAAGCAGATCTGTACCATACTATGATATATATGTTCCTCAGTCCAACAGATGAACTTGGGGAGAACCAATTATTTCCTGGACAGAAAACAGTGCAGCTTGTTTTACTTCTGCTTGCTCTGGTGTCTGTTCCCTGGATGCTGATCCCAAAGCCATTTTTCTTGAAGATGGAGCATGAGCGAAGGCATCAAGGACAACAATATGCAATGCTTCAGAGCACAGATGACTCAGTGGTAGCGGAGATGGGACATCATAATGGCTCGAACCACCATGAGGAGTTCGAGTTCAGTGAAGTTTTTGTTCACCAGTTGATCCACACAATTGAGTTTGTTCTTGGGGCAGTCTCAAATACAGCCTCATATCTTCGTCTCTGGGCTCTCAGTCTTGCACACTCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGGGTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGCGACAGTTGGTGTCTTGCTTGTTATGGAGACCCTAAGTGCATTCCTTCACGCCTTAAGGCTACATTGGGTGGAGTTCCAGAACAAATTCTATGAGGGCGATGGATACAAGTTTGCGCCCTTCTCTTTCGCACTGATCAGTGAAGAGGAAGACTGAGTTTGCGCAATTATTGCATCTATTGTAGCGTGTAATTTCTTGGGGCGTCCTTTTTTCTCAAAGCGTCAAGTATTTATCACGGAAGAATCATAAACCTCCAGTTTGTTCCTTCATCAGGAAAGGGACTAGCAGCATCATTTTTTGCTTTGCTACGAATGATTCGTGGCAAGATGATTTTTTGGGTGGCCGTTGGCACATCGGGTGGCATCACCCTTATTTTGGTGTAAGGCTAATAAATAATAAGTAAATTCTGCACTCGGGTTGCCATTTGGGCAATTAGTTTTCTGCACATAAATAAACATTGTATCAAATGTTAATATTCCATTGGGTTCTTTTATTGTCAATAAAGAGTGCGGCCTACATTCTTTAAAAAAAAGAAA]
[+] EMBL AK119298 [TTCAGCGAGCCAGAGAGGAAACGAACCGATCGATCAGGCCGTCGCTCCGCTCGCCGCCGCGCGACGCGACGCGACGCGACACGCCGGAGACGGACGACGAGCGCTTTGCCTTCCCCGCGCGCGCGCGCGCGCGCACGGAGGCGGACGCTGGTCGGTTTGGTCGGGTGCGACCGGGAACGGCGGCCATGGCGCGCGGCGGGGGCGGCGGGTGCTGCCCGCCGATGGATCTGATGCGGTCGGAGGCGATGCAGCTGGTGCAGGTCATCATCCCCACGGAGTCGGCGCACCTCACCGTCTCCTACCTCGGCGAACTCGGCCTCCTCCAGTTGAAAGACCTTAACGCAGACAAGAGTCCTTTTCAACGAACATATGCTGCCCAGATAAAAAGGTGTGGTGAAATGGCTCGCAAATTAAGATTTTTCAAAGAACAAATGTCCAAAGCTGGCATATCAACTTCTGCACAATTAACTGAAATTTCGTTGGACTTTGATGATTTGGAGATAAAGCTTGGAGAACTGGAAGCTGAACTAGCTGAAGTTAATGCAAACAATGAAAAGTTAAAGCGGACCTACAATGAGCTGTTGGAGTACAGTACTGTTCTTCAAAAGGCTGGTGAATTTTTCTATTCGGCTCAAAGAAGTGCTGCGGCGCAATAGAGAGAAATGGAGGCAAATCAATCTGGTGAGAGTTCACTGGAGAGCCCTCTGCTGGAGCAGGATACGTTAACAGATGCATCAAAACAAGTGAAGCTTGGATCATTGAGTGGTCTTGTACCAAAGGAAAAGGCAATGGCTTTTGAACGCATCTTATTCCGTGCCACGAGGGGAAACATTTTCCTCAGACAAGAGTCTGTTGATGAACCTGTCACTGACCCAGTCTCTGGAGAAAAGGTTGCCAAAAATGCATTTGTTATTTTCTACTCTGGGGATAGAGCAAAAGCCAAAATTCTGAAGATATGTGATGCGTTCAACGCAAATCGCTACCCATTTCCAGAAGATGTTGCTAGACAATTACATGCTGTTCAGGAGGTATCTGCAAAGATATCAGAGTTAAAGGCAACAATTGACATGGGATTAGCACATCGTGACAATATATTGAAAAATATCGCGTCTGAGTTTGAGAATTGGAACCGTCTGGCAAATAAGGAAAAAATAATTTACCACACTTTGAACATGTTGAGTGTTGATGTGACAAAGAAATGCTTAGTTGGTGAGGGCTGGAGTCCAGTTTTTGCAACAACTCAGATCCAAGATGCGCTCCAGCGAGCTACTCTTGATAGCAAATCCCAAGTTGGTTCAATTTTTCAAGTTCTCAACACAACAGAATCTCCCCCGACATATTTCCAGACAAATAAGTTCACTTCGGCTTTCCAGGAAATTGTTGATGCATACGGGATAGCCAAATATCAAGAAGCAAACCCTGGTGTATTCACTATTGTCACTTTTCCTTTCTTATTTGCTGTCATGTTTGGAGATTGGGGACATGGAATTTGCATATTGGTTTCGACACTCTATCTGATAATCCGAGAGAAGAAATTTGCTTCACAGAAACTTGGAGACATAATGGAGATGATGTTTGGTGGGCGCTATGTAATTATAATGATGGCACTCTTTTCAATCTATACAGGATTAATATACAATGAATTTTTCTCTGTTCCATTTGAGCTTTTTGGTAAATCTGCTTATGCATGCCGTGATCCTTCTTGTGGAGATGCTGCAACAGAAGGATTACTCAAGGTAAGACGGACATACCCTTTTGGTGTGGACCCTGTATGGCATGGCAGCCGCAGCGAGTTGCCGTTTCTCAACTCACTGAAGATGAAGATGTCAATTCTTCTTGGAGTTGCACAAATGAACCTTGGAATTGTGATTAGTTACTTTAATGCGAAATTCTTCAGGAACAGTGTTAATGTGTGGTACCAGTTCATCCCCCAGCTGATCTTCTTGAACAGCTTATTTGGTTACTTATCCATGCTCATCATTATCAAGTGGAGCACGGGGGCAAAAGCAGATCTGTACCATACTATGATATATATGTTCCTCAGTCCAACAGATGAACTTGGGGAGAACCAATTATTTCCTGGACAGAAAACAGTGCAGCTTGTTTTACTTCTGCTTGCTCTGGTGTCTGTTCCCTGGATGCTGATCCCAAAGCCATTTTTCTTGAAGATGGAGCATGAGCGAAGGCATCAAGGACAACAATATGCAATGCTTCAGAGCACAGATGACTCAGTGGTAGCGGAGATGGGACATCATAATGGCTCGAACCACCATGAGGAGTTCGAGTTCAGTGAAGTTTTTGTTCACCAGTTGATCCACACAATTGAGTTTGTTCTTGGGGCAGTCTCAAATACAGCCTCATATCTTCGTCTCTGGGCTCTCAGTCTTGCACACTCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGGGTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGCGACAGTTGGTGTCTTGCTTGTTATGGAGACCCTAAGTGCATTCCTTCACGCCTTAAGGCTACATTGGGTGGAGTTCCAGAACAAATTCTATGAGGGCGATGGATACAAGTTTGCGCCCTTCTCTTTCGCACTGATCAGTGAAGAGGAAGACTGAGTTTGCGCAATTATTGCATCTATTGTAGCGTGTAATTTCTTGGGGCGTCCTTTTTTCTCAAAGCGTCAAGTATTTATCACGGAAGAATCATAAACCTCCAGTTTGTTCCTTCATCAGGAAAGGGACTAGCAGCATCATTTTTTGCTTTGCTACGAATGATTCGTGGCAAGATGATTTTTTGGGTGGCCGTTGGCACATCGGGTGGCATCACCCTTATTTTGGTGTAAGGCTAATAAATAATAAGTAAATTCTGCACTCGGGTTGCCATTTGGGCAATTAGTTTTCTGCACATAAATAAACATTGTATCAAATGTTAATATTCCATTGGGTTCTTTTATTGTCAATAAAGAGTGCGGCC ]
[+] EMBL AK101151 [ AGCCAGAGAGGAAACGAACCGATCGATCAGGCCGTCGCTCCGCTCGCCGCCGCGCGACGCGACGCGACGCGACACGCCGGAGACGGACGACGAGCGCTTTGCCTTCCCCGCGCGCGCGCGCGCGCGCACGGAGGCGGACGCTGGTCGGTTTGGTCGGGTGCGACCGGGAACGGCGGCCATGGCGCGCGGCGGGGGCGGCGGGTGCTGCCCGCCGATGGATCTGATGCGGTCGGAGGCGATGCAGCTGGTGCAGGTCATCATCCCCACGGAGTCGGCGCACCTCACCGTCTCCTACCTCGGCGAACTCGGCCTCCTCCAGTTGAAAGACCTTAACGCAGACAAGAGTCCTTTTCAACGAACATATGCTGCCCAGATAAAAAGGTGTGGTGAAATGGCTCGCAAATTAAGATTTTTCAAAGAACAAATGTCCAAAGCTGGCATATCAACTTCTGCACAATTAACTGAAATTTCGTTGGACTTTGATGATTTGGAGATAAAGCTTGGAGAACTGGAAGCTGAACTAGCTGAAGTTAATGCAAACAATGAAAAGTTAAAGCGGACCTACAATGAGCTGTTGGAGTACAGTACTGTTCTTCAAAAGGCTGGTGAATTTTTCTATTCGGCTCAAAGAAGTGCTGCGGCGCAACAGAGAGAAATGGAGGCAAATCAATCTGGTGAGAGTTCACTGGAGAGCCCTCTGCTGGAGCAGGATACGTTAACAGATGCATCAAAACAAGTGAAGCTTGGATCATTGAGTGGTCTTGTACCAAAGGAAAAGGCAATGGCTTTTGAACGCATCTTATTCCGTGCCACGAGGGGAAACATTTTCCTCAGACAAGAGTCTGTTGATGAACCTGTCACTGACCCAGTCTCTGGAGAAAAGGTTGCCAAAAATGCATTTGTTATTTTCTACTCTGGGGATAGAGCAAAAGCCAAAATTCTGAAGATATGTGATGCGTTCAACGCAAATCGCTACCCATTTCCAGAAGATGTTGCTAGACAATTACATGCTGTTCAGGAGGTATCTGCAAAGATATCAGAGTTAAAGGCAACAATTGACATGGGATTAGCACATCGTGACAATATATTGAAAAATATCGCGTCTGAGTTTGAGAATTGGAACCGTCTGGCAAATAAGGAAAAAATAATTTACCACACTTTGAACATGTTGAGTGTTGATGTGACAAAGAAATGCTTAGTTGGTGAGGGCTGGAGTCCAGTTTTTGCAACAACTCAGATCCAAGATGCGCTCCAGCGAGCTACTCTTGATAGCAAATCCCAAGTTGGTTCAATTTTTCAAGTTCTCAACACAACAGAATCTCCCCCGACATATTTCCAGACAAATAAGTTCACTTCGGCTTTCCAGGAAATTGTTGATGCATACGGGATAGCCAAATATCAAGAAGCAAACCCTGGTGTATTCACTATTGTCACTTTTCCTTTCTTATTTGCTGTCATGTTTGGAGATTGGGGACATGGAATTTGCATATTGGTTTCGACACTCTATCTGATAATCCGAGAGAAGAAATTTGCTTCACAGAAACTTGGAGACATAATGGAGATGATGTTTGGTGGGCGCTATGTAATTATAATGATGGCACTCTTTTCAATCTATACAGGATTAATATACAATGAATTTTTCTCTGTTCCATTTGAGCTTTTTGGTAAATCTGCTTATGCATGCCGTGATCCTTCTTGTGGAGATGCTGCAACAGAAGGATTACTCAAGGTAAGACGGACATACCCTTTTGGTGTGGACCCTGTATGGCATGGCAGCCGCAGCGAGTTGCCGTTTCTCAACTCACTGAAGATGAAGATGTCAATTCTTCTTGGAGTTGCACAAATGAACCTTGGAATTGTGATTAGTTACTTTAATGCGAAATTCTTCAGGAACAGTGTTAATGTGTGGTACCAGTTCATCCCCCAGCTGATCTTCTTGAACAGCTTATTTGGTTACTTATCCATGCTCATCATTATCAAGTGGAGCACGGGGGCAAAAGCAGATCTGTACCATACTATGATATATATGTTCCTCAGTCCAACAGATGAACTTGGGGAGAACCAATTATTTCCTGGACAGAAAACAGTGCAGCTTGTTTTACTTCTGCTTGCTCTGGTGTCTGTTCCCTGGATGCTGATCCCAAAGCCATTTTTCTTGAAGATGGAGCATGAGCGAAGGCATCAAGGACAACAATATGCAATGCTTCAGAGCACAGATGACTCAGTGGTAGCGGAGATGGGACATCATAATGGCTCGAACCACCATGAGGAGTTCGAGTTCAGTGAAGTTTTTGTTCACCAGTTGATCCACACAATTGAGTTTGTTCTTGGGGCAGTCTCAAATACAGCCTCATATCTTCGTCTCTGGGCTCTCAGTCTTGCACACTCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGGGTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGCGACAGTTGGTGTCTTGCTTGTTATGGAGACCCTAAGTGCATTCCTTCACGCCTTAAGGCTACATTGGGTGGAGTTCCAGAACAAATTCTATGAGGGCGATGGATACAAGTTTGCGCCCTTCTCTTTCGCACTGATCAGTGAAGAGGAAGACTGAGTTTGCGCAATTATTGCATCTATTGTAGCGTGTAATTTCTTGGGGCGTCCTTTTTTCTCAAAGCGTCAAGTATTTATCACGGAAGAATCATAAACCTCCAGTTTGTTCCTTCATCAGGAAAGGGACTAGCAGCATCATTTTTTGCTTTGCTACGAATGATTCGTGGCAAGATGATTTTTTGGGTGGCCGTTGGCACATCGGGTGGCATCACCCTTATTTTGGTGTAAGGCTAATAAATAATAAGTAAATTCTGCACTCGGGTTGCCATTTGGGCAATTAGTTTTCTGCACATAAATAAACATTGTATCAAATGTTAATATTCCATTGGGTTCTTTTATTGTCAATAAAGAGTGCGGCC ]
[-] EMBL CB683583 [ GGAGATGGGACATCATAATGGCTCGAACCACCATGAGGAGTTCGAGTTCAGTGAAGTTTTTGTTCACCAGTTGATCCACACAATTGAGTTTGTTCTTGGGGCAGTCTCAAATACAGCCTCATATCTTCGTCTCTGGGCTCTCAGTCTTGCACACTCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGGGTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGCGACAGTTGGTGTCTTGCTTGTTATGGAGACCCTAAGTGCATTCCTTCACGCCTTAAGGCTACATTGGGTGGAGTTCCAGAACAAATTCTATGAGGGCGATGGATACAAGTTTGCGCCCTTCTCTTTCGCACTGATCAGTGAAGAGGAAGACTGAGTTTGCGCAATTATTGCATCTATTGTAGCGTGTAATTTCTTGGGGCGTCCTTTTTTCTCAAAGCGTCAAGTATTTATCACGGAAGAATCATAAACCTCCAGTTTGTTCCTTCATCAGGAAAGGGACTAGCAGCATCATTTTTTGCTTTGCTACGAATGATTCGTGGCAAGATGATTTTTTGGGTGGCCGTTGGCACATCGGGTGGCATCACCCTTATTTTGGTGTAAGGCTAATAAATAATAAGTAAATTCTGCACTCGGGTTGCCATTTGGGCAATTAGTTTTCTGCACATAAATAAACATTGTATCAAATGTTAATATTCCATTGGGTTCTTAAGTTGTCAATAAAGAGTGCGGCCTACATTCTTTAAAAAAAAGA ]
[+] EMBL BE230598 [ TAAGGCTACATTGGGTGGAGTTCCAGAACAAATTCTATGAGGGCGATGGATACAAGTTTGCGCCCTTCTCTTTCGCACTGATCAGTGAAGAGGAAGACTGAGTTTGCGCAATTATTGCATCTATTGTAGCGTGTAATTTCTTGGGGCGTCCTTTTTTCTCAAAGCGTCAAGTATTTATCACGGAAGAATCATAAACCTCCAGTTTGTTCCTTCATCAGGAAAGGGACTAGCAGCATCATTTTTTGCTTTGCTACGAATGATTCGTGGCAAGATGATTTTTTGGGTGGCCGTTGGCACATCGGGTGGCATCACCCTTATTTTGGTGTAAGGCTAATAAATAATAAGTAAATTCTGCACTCGGGTTGCCATTTGGGCAATTAGTTTTCTGCACATAAATAAACATTGTATCAAATGTTAATATTCCATTGGGTTCTTTTATTG CAATAAAGAGTGCGGCCTACATTCTTTAAAAAAAAAAAA]
[+] EMBL CB000981 [ AGACTGAGTTTGCGCAATTATTGCATCTATTGTAGCGTGTAATTTCTTGGGGCGTCCTTTTTTCTCAAAGCGTCAAGTATTTATCACGGAAGAATCATAAACCTCCAGTTTGTTCCTTCATCAGGAAAGGGACTAGCAGCATCATTTTTTGCTTTGCTACGAATGATTCGTGGCAAGATGATTTTTTGGGTGGCCGTTGGCACATCGGGTGGCATCACCCTTATTTTGGTGTAAGGCTAATAAATAATAAGTA ]
consensusID : consensus_10054#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[TTCACCGTCAGCCGGGCCACCGCGATGTCGCGCGGCGGCGGCGGGTGCTGCCCGTCGATGGATCTGATGCGGTCGGAGGCGATGCAGCTGGTGCAGGTCATCATCCCGGCGGAGTCCGCGCACCTCGCCGTCTCCTACCTCGGCGACCTCGGCCTCCTCCAGTTCAAAGACCTTAATGCCGACAAAAGCCCATTCCAGCGGACTTATGCTTCCCAGATCAAGAGGTGTGGTGAAATGGCTCGCAAGTTGCGGTTTTTTAGGGAACAAATGTCAAAAGCTGCCATAGCAACTTCTACACAATTTTCAGGGACTTCTTTGGAAATTGATGATTTAGAGGTCAAACTTGGAGAACTAGAAGTTGAGCTGACTGAAGTTAATGCAAATAATGACAAGTTACAGAGGACATACAACGAGCTGGTGGAGTACAACATTGTTCTGCAGAAGGCTGGTGAATTTTTCTATTCAGCTCAACGAAGTGCAACAGAACAACAGAGGGAAATGTCAGCAGATCAATCTGGCGATTCTTCTCTGGAGAGTCCTTTATTGCAGCAGGAAATGGTGACAGATCCATCAAAACAAGTGAAGCTTGGTTCCCTGAGCGG]
[+] EMBL CF303419 [TTCACCGTCAGCCGGGCCACCGCGATGTCGCGCGGCGGCGGCGGGTGCTGCCCGTCGATGGATCTGATGCGGTCGGAGGCGATGCAGCTGGTGCAGGTCATCATCCCGGCGGAGTCCGCGCACCTCGCCGTCTCCTACCTCGGCGACCTCGGCCTCCTCCAGTTCAAAGACCTTAATGCCGACAAAAGCCCATTCCAGCGGACTTATGCTTCCCAGATCAAGAGGTGTGGTGAAATGGCTCGCAAGTTGCGGTTTTTTAGGGAACAAATGTCAAAAGCTGCCATAGCAACTTCTACACAATTTTCAGGGACTTCTTTGGAAATTGATGATTTAGAGGTCAAACTTGGAGAACTAGAAGTTGAGCTGACTGAAGTTAATGCAAATAATGACAAGTTACAGAGGACATACAACGAGCTGGTGGAGTACAACATTGTTCTGCAGAAGGCTGGTGAATTTTTCTATTCAGCTCAACGAAGTGCAACAGAACAACAGAGGGAAATGTCAGCAGATCAATCTGGCGATTCTTCTCTGGAGAGTCCTTTATTGCAGCAGGAAATGGTGACAGATCCATCAAAACAAGTGAAGCTTGGTTCCCTGAGCGG]
consensusID : consensus_10054#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence
[TATCCGCATCGCTGGCATTACCATCTTCCATCTGTGCGACAGTTGGTGTCTTGCTTGTTATGGAGACCCTAAGTGCATTCCTTCACGCCTTAAGGCTACATTGGGTGGCGTTCCNGAACAAATTCTATGAGGGCGATGGATACAAGTTTGCGCCCTTCTCTTTCGCACTGATCAGTGAAGAGGAAGACTGAGTTTGCGCAATTATTGCATCTATTGTAGCGTGTAATTTCTTGGGGCGTCCTTTTTTCTCAAAGCGTCAAGTATTTATCACGGAAGAATCATAAACCTCCNGTTTGTTCCTTCATCAGGAAAGGGACTAGCAGCATCATTTTTTGCTTTGCTACGAATGATTCGTGGCNAGATGATTTTTTGGGTGGCCGTTGGCACATCGGGTGGCATCACCCTTATTTTGGTGTAAGGCTAATAAATAATAAGTAAATTCTGCACTCGGGTTGCCATTTGGGCAATTAGTTTTCTGCACATAAATAAACATTGTATCAAATGTTAATATTCCATTGGGTTCTTTTATTGTNAAAAAAGAAAAAAAAAAAAAN]
[+] EMBL AU075796 [TATCCGCATCGCTGGCATTACCATCTTCCATCTGTGCGACAGTTGGTGTCTTGCTTGTTATGGAGACCCTAAGTGCATTCCTTCACGCCTTAAGGCTACATTGGGTGGCGTTCCNGAACAAATTCTATGAGGGCGATGGATACAAGTTTGCGCCCTTCTCTTTCGCACTGATCAGTGAAGAGGAAGACTGAGTTTGCGCAATTATTGCATCTATTGTAGCGTGTAATTTCTTGGGGCGTCCTTTTTTCTCAAAGCGTCAAGTATTTATCACGGAAGAATCATAAACCTCCNGTTTGTTCCTTCATCAGGAAAGGGACTAGCAGCATCATTTTTTGCTTTGCTACGAATGATTCGTGGCNAGATGATTTTTTGGGTGGCCGTTGGCACATCGGGTGGCATCACCCTTATTTTGGTGTAAGGCTAATAAATAATAAGTAAATTCTGCACTCGGGTTGCCATTTGGGCAATTAGTTTTCTGCACATAAATAAACATTGTATCAAATGTTAATATTCCATTGGGTTCTTTTATTGTNAAAAAAGAAAAAAAAAAAAAN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10054#0 TTCAGCGAGCCAGAGAGGAAACGAACCGATCGATCAGGCCGTCGCTCCGCTCGCCGCCGC 60
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 GCGACGCGACGCGACGCGACACGCCGGAGACGGACGACGAGCGCTTTGCCTTCCCCGCGC 120
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 GCGCGCGCGCGCGCACGGAGGCGGACGCTGGTCGGTTTGGTCGGGTGCGACCGGGAACGG 180
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 CGGCCATGGCGCGCGGCGGGGGCGGCGGGTGCTGCCCGCCGATGGATCTGATGCGGTCGG 240
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 AGGCGATGCAGCTGGTGCAGGTCATCATCCCCACGGAGTCGGCGCACCTCACCGTCTCCT 300
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 ACCTCGGCGAACTCGGCCTCCTCCAGTTGAAAGACCTTAACGCAGACAAGAGTCCTTTTC 360
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 AACGAACATATGCTGCCCAGATAAAAAGGTGTGGTGAAATGGCTCGCAAATTAAGATTTT 420
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 TCAAAGAACAAATGTCCAAAGCTGGCATATCAACTTCTGCACAATTAACTGAAATTTCGT 480
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 TGGACTTTGATGATTTGGAGATAAAGCTTGGAGAACTGGAAGCTGAACTAGCTGAAGTTA 540
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 ATGCAAACAATGAAAAGTTAAAGCGGACCTACAATGAGCTGTTGGAGTACAGTACTGTTC 600
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 TTCAAAAGGCTGGTGAATTTTTCTATTCGGCTCAAAGAAGTGCTGCGGCGCAATAGAGAG 660
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 AAATGGAGGCAAATCAATCTGGTGAGAGTTCACTGGAGAGCCCTCTGCTGGAGCAGGATA 720
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 CGTTAACAGATGCATCAAAACAAGTGAAGCTTGGATCATTGAGTGGTCTTGTACCAAAGG 780
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 AAAAGGCAATGGCTTTTGAACGCATCTTATTCCGTGCCACGAGGGGAAACATTTTCCTCA 840
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 GACAAGAGTCTGTTGATGAACCTGTCACTGACCCAGTCTCTGGAGAAAAGGTTGCCAAAA 900
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 ATGCATTTGTTATTTTCTACTCTGGGGATAGAGCAAAAGCCAAAATTCTGAAGATATGTG 960
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 ATGCGTTCAACGCAAATCGCTACCCATTTCCAGAAGATGTTGCTAGACAATTACATGCTG 1020
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 TTCAGGAGGTATCTGCAAAGATATCAGAGTTAAAGGCAACAATTGACATGGGATTAGCAC 1080
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 ATCGTGACAATATATTGAAAAATATCGCGTCTGAGTTTGAGAATTGGAACCGTCTGGCAA 1140
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 ATAAGGAAAAAATAATTTACCACACTTTGAACATGTTGAGTGTTGATGTGACAAAGAAAT 1200
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 GCTTAGTTGGTGAGGGCTGGAGTCCAGTTTTTGCAACAACTCAGATCCAAGATGCGCTCC 1260
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 AGCGAGCTACTCTTGATAGCAAATCCCAAGTTGGTTCAATTTTTCAAGTTCTCAACACAA 1320
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 CAGAATCTCCCCCGACATATTTCCAGACAAATAAGTTCACTTCGGCTTTCCAGGAAATTG 1380
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 TTGATGCATACGGGATAGCCAAATATCAAGAAGCAAACCCTGGTGTATTCACTATTGTCA 1440
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 CTTTTCCTTTCTTATTTGCTGTCATGTTTGGAGATTGGGGACATGGAATTTGCATATTGG 1500
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 TTTCGACACTCTATCTGATAATCCGAGAGAAGAAATTTGCTTCACAGAAACTTGGAGACA 1560
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 TAATGGAGATGATGTTTGGTGGGCGCTATGTAATTATAATGATGGCACTCTTTTCAATCT 1620
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 ATACAGGATTAATATACAATGAATTTTTCTCTGTTCCATTTGAGCTTTTTGGTAAATCTG 1680
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 CTTATGCATGCCGTGATCCTTCTTGTGGAGATGCTGCAACAGAAGGATTACTCAAGGTAA 1740
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 GACGGACATACCCTTTTGGTGTGGACCCTGTATGGCATGGCAGCCGCAGCGAGTTGCCGT 1800
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 TTCTCAACTCACTGAAGATGAAGATGTCAATTCTTCTTGGAGTTGCACAAATGAACCTTG 1860
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 GAATTGTGATTAGTTACTTTAATGCGAAATTCTTCAGGAACAGTGTTAATGTGTGGTACC 1920
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 AGTTCATCCCCCAGCTGATCTTCTTGAACAGCTTATTTGGTTACTTATCCATGCTCATCA 1980
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 TTATCAAGTGGAGCACGGGGGCAAAAGCAGATCTGTACCATACTATGATATATATGTTCC 2040
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 TCAGTCCAACAGATGAACTTGGGGAGAACCAATTATTTCCTGGACAGAAAACAGTGCAGC 2100
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 TTGTTTTACTTCTGCTTGCTCTGGTGTCTGTTCCCTGGATGCTGATCCCAAAGCCATTTT 2160
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 TCTTGAAGATGGAGCATGAGCGAAGGCATCAAGGACAACAATATGCAATGCTTCAGAGCA 2220
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 CAGATGACTCAGTGGTAGCGGAGATGGGACATCATAATGGCTCGAACCACCATGAGGAGT 2280
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 TCGAGTTCAGTGAAGTTTTTGTTCACCAGTTGATCCACACAATTGAGTTTGTTCTTGGGG 2340
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 CAGTCTCAAATACAGCCTCATATCTTCGTCTCTGGGCTCTCAGTCTTGCACACTCGGAGT 2400
consensus_10054#2 ------------------------------------------------------------
consensus_10054#1 ------------------------------------------------------------
consensus_10054#0 TGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGGGTACAACAACATTCTTA 2460
consensus_10054#2 ----------------------------------------------------------TA 2
consensus_10054#1 --------------------------------------------------------TTCA 4
*
consensus_10054#0 TCCGCATCGCTGGCATTACCATCTTC-ATCTGTGCGACAGTTGGTGTC--TTGCTTGTTA 2517
consensus_10054#2 TCCGCATCGCTGGCATTACCATCTTCCATCTGTGCGACAGTTGGTGTC--TTGCTTGTTA 60
consensus_10054#1 CCGTCAGCCGGGCCACCGCGATGTCGCGCGGCGGCGGCGGGTGCTGCCCGTCGATGGATC 64
* ** * * ** * ** * *** * * ** ** * * * * * *
consensus_10054#0 TGGAGACCCTAAGTGCATTCCTTCACGCCTTAAGGCTACATTG-GGTGGAGTTCCAGAAC 2576
consensus_10054#2 TGGAGACCCTAAGTGCATTCCTTCACGCCTTAAGGCTACATTG-GGTGGCGTTCCNGAAC 119
consensus_10054#1 TGATGCGGTCGGAGGCGATGCAGC-TGGTGCAGGTCATCATCCCGGCGGAGTCCGCGCAC 123
** * ** * * * * * * * *** ** ** ** * * **
consensus_10054#0 AAATTCTATGAGGGCGATGGATACAAGTTTGCGCCCTTCTCTTTCGCACTGATCAGTGAA 2636
consensus_10054#2 AAATTCTATGAGGGCGATGGATACAAGTTTGCGCCCTTCTCTTTCGCACTGATCAGTGAA 179
consensus_10054#1 ---CTCGCCGTCTCCTACCTCGGCGACCTCGGCCTCCTCCAGTTCAAAGACCTTAATGCC 180
** * * * * * * * * * ** *** * * * **
consensus_10054#0 GAGGAAGACTGAGTTTGCGCAATTATTGCATCT---ATTGTAGCGTGTAAT-------TT 2686
consensus_10054#2 GAGGAAGACTGAGTTTGCGCAATTATTGCATCT---ATTGTAGCGTGTAAT-------TT 229
consensus_10054#1 GACAAAAGCCCATTCCAGCGGACTTATGCTTCCCAGATCAAGAGGTGTGGTGAAATGGCT 240
** ** * * * * * *** ** ** **** * *
consensus_10054#0 CTTGGGGCGTCCTTTTTTC-----------TCAAAG--CGTCA-AGTATTTATCACGGAA 2732
consensus_10054#2 CTTGGGGCGTCCTTTTTTC-----------TCAAAG--CGTCA-AGTATTTATCACGGAA 275
consensus_10054#1 CGCAAGTTGCGGTTTTTTAGGGAACAAATGTCAAAAGCTGCCATAGCAACTTCTACACAA 300
* * * ****** ***** * ** ** * * ** **
consensus_10054#0 GAATCATAAACCTCCA-GTTTGTTCCTTCATCAGGAAAGGGACTAGCAGCATCATTTTTT 2791
consensus_10054#2 GAATCATAAACCTCCN-GTTTGTTCCTTCATCAGGAAAGGGACTAGCAGCATCATTTTTT 334
consensus_10054#1 TTTTCAGGGACTTCTTTGGAAATTGATGATTTAGAGGTCAAACTTGGAGAACTAGAAGTT 360
*** ** ** * ** * * ** *** * ** * * **
consensus_10054#0 GCTTTG-CTACGAATGATTCGTGGCAAGATGATTTTTTGGGTGGCCGTTGGCACATCGGG 2850
consensus_10054#2 GCTTTG-CTACGAATGATTCGTGGCNAGATGATTTTTTGGGTGGCCGTTGGCACATCGGG 393
consensus_10054#1 GAGCTGACTGAAGTTAATGCAAATAATGACAAGTTACAGAG-GACATACAACGAGCTGGT 419
* ** ** * ** * ** * ** * * * * * **
consensus_10054#0 TGGCATCACCCTTATTTTGGTGTAAGGCTAATAAATAATAAGTAAATTCTGCACTCGGGT 2910
consensus_10054#2 TGGCATCACCCTTATTTTGGTGTAAGGCTAATAAATAATAAGTAAATTCTGCACTCGGGT 453
consensus_10054#1 GGAGTACAACATTGTTCTG-CAGAAGGCTGGTGAATTTT---TCTATTCAGCTCAACGAA 475
* ** * ** ** ** ****** * *** * * **** ** * *
consensus_10054#0 TGCCATTTGGGCAATT-----AGTTTTCTGCACATAAATA-AACATTGTATCAAATGTTA 2964
consensus_10054#2 TGCCATTTGGGCAATT-----AGTTTTCTGCACATAAATA-AACATTGTATCAAATGTTA 507
consensus_10054#1 GTGCAACAGAACAACAGAGGGAAATGTCAGCAGATCAATCTGGCGATTCTTCTCTGGAGA 535
** * *** * * ** *** ** *** * * ** * *
consensus_10054#0 ATATTCCATTGGGTTCTTTTATTGTCAATAAAGAGTGCGGCCTACATTCTTTAAAAAAAA 3024
consensus_10054#2 ATATTCCATTGGGTTCTTTTATTGTNAAAAAAGAAAAAAAAAAAAAN------------- 554
consensus_10054#1 GTCCTTTATTGCAGCAGGAAATGGTGACAGATCCATCAAAACAAGTGAAGCTTGGTTCCC 595
* * **** ** ** * * *
consensus_10054#0 GAAA--- 3028
consensus_10054#2 -------
consensus_10054#1 TGAGCGG 602
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||