cluster # 10057

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Oryza sativa
cluster # 10057 cluster # 10057 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10057#0 length = 582 sequences # 6

consensus_10057#1 length = 470 sequences # 1

consensusID : consensus_10057#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 582
fasta sequence

                              [TCAAGAAGTACTCGAGCTTTGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGANNNNNNC-AANNNNNCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGNCNACGNNNNNCNNNNGCAGCTTATCAGCTTCATCGCNNNNNNNNNNNNNGGCTGCGNNNNNNCTGGTGGCAACTANGNNNNC]

[+] EMBL CF295507             [TCAAGAAGTACTCGAGCTTTTAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCATTTTCTCAAGTCCACCGCCGGCATGCCCGTCGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CF196039             [                 aaaGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGNNNCC AAGNNNNCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGNCNACGNNNNNCAGGTGCAGCTTATCAGCTTCATCGCNNNNNNNNNNNNNGGCTGCGNNNNNNCTGGTGGCAACTANGNNNNC]
[+] EMBL CF196518             [                    GAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGNNNNC AAGNNNNCGTACCCTGATGCATTCNNNCGTATCATCGGCTTNGNNNNCGTTANNCNNNNGCANNTCATCAGCTTCATCGNNNNNNNNN                                      ]
[+] EMBL CF195731             [                    GAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGNNCGGGTGCACCGACGCCACCCANNNNCTCAAGGAGCTCGNNNNNNNN AANNNNNCGNACCnnnan                                                                                                            ]
[+] EMBL CF196142             [                                 TGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACACCACCCNNNTGCTCAANNAGCTCG NNNANNCNNNNNNNNCGTNCCCTGATGCATT                                                                                                       ]
[+] EMBL CF197418             [                                        CTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGANNNNNNC ANNNNNNCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGNCNACGNNNNNCNNNNNCAGCTTATCnnct                                                     ]




>consensus_10057#0
TCAAGAAGTACTCGAGCTTTGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCC
GTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGC
ATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGG
ATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTAC
CTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAG
TGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACAGGTCC
CCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACC
GACGCCACCCAGGTGCTCAAGGAGCTCGANNNNNNCAANNNNNCGTACCCTGATGCATTC
GTCCGTATCATCGGCTTCGNCNACGNNNNNCNNNNGCAGCTTATCAGCTTCATCGCNNNN
NNNNNNNNNGGCTGCGNNNNNNCTGGTGGCAACTANGNNNNC

consensusID : consensus_10057#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence

                              [AAAGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGNACCACAGGTCCCCTGGATACTACGACGGCAGNTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGNNCTCGNNNNNNCCANNNNNNCNTNNNNTGATGCANNNNNNCGTA]

[+] EMBL CF197366             [AAAGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGNACCACAGGTCCCCTGGATACTACGACGGCAGNTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGNNCTCGNNNNNNCCANNNNNNCNTNNNNTGATGCANNNNNNCGTA]




>consensus_10057#1
AAAGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGC
CACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCG
CTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGT
GTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGT
GGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGA
GTTCAGCAAGGTCGGATTTGTCTACCGTGAGNACCACAGGTCCCCTGGATACTACGACGG
CAGNTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCT
CAAGGNNCTCGNNNNNNCCANNNNNNCNTNNNNTGATGCANNNNNNCGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10057#0      TCAAGAAGTACTCGAGCTTTGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCC 60
consensus_10057#1      -----------------AAAGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCC 43
                                           ****************************************

consensus_10057#0      GTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGC 120
consensus_10057#1      GTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGC 103
                       ************************************************************

consensus_10057#0      ATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGG 180
consensus_10057#1      ATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGG 163
                       ************************************************************

consensus_10057#0      ATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTAC 240
consensus_10057#1      ATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTAC 223
                       ************************************************************

consensus_10057#0      CTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAG 300
consensus_10057#1      CTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAG 283
                       ************************************************************

consensus_10057#0      TGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACAGGTCC 360
consensus_10057#1      TGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGNACCACAGGTCC 343
                       ************************************************ ***********

consensus_10057#0      CCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACC 420
consensus_10057#1      CCTGGATACTACGACGGCAGNTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACC 403
                       ******************** ***************************************

consensus_10057#0      GACGCCACCCAGGTGCTCAAGGAGCTCGANNNNNNCAANNNNNCGTACCCTGATGCATTC 480
consensus_10057#1      GACGCCACCCAGGTGCTCAAGGNNCTCGNNNNNNCCANNNNNNCNTNNNNTGATGCANNN 463
                       **********************  **** ***** ** ****** *    *******   

consensus_10057#0      GTCCGTATCATCGGCTTCGNCNACGNNNNNCNNNNGCAGCTTATCAGCTTCATCGCNNNN 540
consensus_10057#1      NNNCGTA----------------------------------------------------- 470
                          ****                                                     

consensus_10057#0      NNNNNNNNNGGCTGCGNNNNNNCTGGTGGCAACTANGNNNNC 582
consensus_10057#1      ------------------------------------------