These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10060#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1402 fasta sequence [GGAAACAAATCCAAAACCCGCTTCGTGCGCCACACCCGCTAAGGCCGCCGCCGCTTCTTCCGAAATGGCCGCCGCCGCCGAGTCCCCCTCCTCTTCCCCGCCGCCGCCGCCGATGTCGCCGGCACCGCAGGCCGCTTCGCCGGCGGAGGATCGGCGGGGCGGGAGGGCACCGGTCCCCCCCTACGTGAAGGCGGCGGCGGGGTCGGTCGGCGGCGTGATGGAGGCGTGCTGCCTGCAGCCGATCGACGTCATCAAGACGCGGCTGCAGCTAGACCGCTCGGGGGCGTACCGGGGCATCGCGCACTGCGGCACCACCGTCGTGCGCTCCGAGGGCGTGCGCGCGCTCTGGAAGGGGCTCACGCCCTTCGCCACCCACCTNACGCTCAAGTACGCGCTCCGCCTNGGCTCCAACGCCGTGCTGCAGTCCGCGTTCAAGGACCCCGGCACGGGCAAGGTCTCCGCGCACGGCCGCCTCGCCTCCGGGTTCGGCGCCGGCGTCCTCGAGGCCCTCCTCATCGTCACCCCCTTCGAGGTGGTTAAAATCAGGTTGCAGCAACAAAAAGGTCTAAGCCCTGACCTGCTGAGATATAAGGGGCCAATACATTGTGCTAGGACGATTGTTACTGAGGAGGGTCTTTTTGGCCTGTGGGCTGGAGCATTACCAACCGTCATGCGTAATGGCACAAACCAAGCCGCAATGTTCACTGCCAAGAATACATTTGATATTGTTCTCTGGAAGAAGCATGAAGGAGATGGGAAGGTTCTCCAGCCATGGCAGTCAATGATTTCAGGTTTTCTTGCAGGAACTGCAGGTCCGATCTGCACTGGACCCTTCGATGTCGTGAAGACTAGACTGATGGCCCAGGGGA-GAACTGGTGACATCAAGTACAAGGGTATGGTCCACGCGATACGCACAATATACACTGAAGAGGGTCTCAGAGCCCTTTGGAAAGGTTTGCTTCCGAGGCTTATGAGGATTCCACCTGGTCAGGCTATAATGTGGGCGGTGGCTGATCAGGTGATGGGCCTCTATGAGAGATCATATCTGCAGCCGGCTCATATGTAATCCCCGTACTTAAGTGATGAACTCAAATTTGTTCAGTTCATCACTTTGGATCGGTGGTAGAGGGACAAGGC-GTCAAAAACTC-AAAATCGTTGATC-GGAAAAGTATCTGTTCAATTACCTAGACATTAGATTGTTCATAGCCAAGAGTTGAGTACTGGCCGGAGCAATGAACTGATGTATTCTAAGCAATCAATAATGGTGAAAC-GCCCTATTGGATTTTAAAAAAAGTGTGCTGATGACCGCAATGTATGTAATGGAGTAGTAAATTGCAATAGCGTAGACCTGCCTGTTTTGCTTCTGTGATCAACTGTTCTTTTAGATGCAGAATGCTCAACTG] [+] EMBL AU166517 [GGAAACAAATCCAAAACCCGCTTCGTGCGCCACACCCGCTAAGGCCGCCGCCGCTTCTTCCGAAATGGCCGCCGCCGCCGAGTCCCCCTCCTCTTCCCCGCCGCCGCCGCCGATGTCGCCGGCACCGCAGGCCGCTTCGCCGGCGGAGGATCGGCGGGGCGGGAGGGCACCGGTCCCCCCCTACGTGAAGGCGGCGGCGGGGTCGGTCGGCGGCGTGATGGAGGCGTGCTGCCTGCAGCCGATCGACGTCATCAAGACGCGGCTGCAGCTAGACCGCTCGGGGGCGTACCGGGGCATCGCGCACTGCGGCACCACCGTCGTGCGCTCCGAGGGCGTGCGCGCGCTCTGGAAGGGGCTCACGCCCTTCGCCACCCACCTNACGCTCAAGTACGCGCTCCGCCTNGGCTCCAACGCCGTGCTGCAGTCCGCGTTCAA ] [+] EMBL AK069872 [ CGCCGCCGCCGCCGATGTCGCCGGCACCGCAGGCCGCTTCGCCGGCGGAGGATCGGCGGGGCGGGAGGGCACCGGTCCCCCCCTACGTGAAGGCGGCGGCGGGGTCGGTCGGCGGCGTGATGGAGGCGTGCTGCCTGCAGCCGATCGACGTCATCAAGACGCGGCTGCAGCTAGACCGCTCGGGGGCGTACCGGGGCATCGCGCACTGCGGCACCACCGTCGTGCGCTCCGAGGGCGTGCGCGCGCTCTGGAAGGGGCTCACGCCCTTCGCCACCCACCTCACGCTCAAGTACGCGCTCCGCCTCGGCTCCAACGCCGTGCTGCAGTCCGCGTTCAAGGACCCCGGCACGGGCAAGGTCTCCGCGCACGGCCGCCTCGCCTCCGGGTTCGGCGCCGGCGTCCTCGAGGCCCTCCTCATCGTCACCCCCTTCGAGGTGGTTAAAATCAGGTTGCAGCAACAAAAAGGTCTAAGCCCTGACCTGCTGAGATATAAGGGGCCAATACATTGTGCTAGGACGATTGTTACTGAGGAGGGTCTTTTTGGCCTGTGGGCTGGAGCATTACCAACCGTCATGCGTAATGGCACAAACCAAGCCGCAATGTTCACTGCCAAGAATACATTTGATATTGTTCTCTGGAAGAAGCATGAAGGAGATGGGAAGGTTCTCCAGCCATGGCAGTCAATGATTTCAGGTTTTCTTGCAGGAACTGCAGGTCCGATCTGCACTGGACCCTTCGATGTCGTGAAGACTAGACTGATGGCCCAGGGGA GAACTGGTGACATCAAGTACAAGGGTATGGTCCACGCGATACGCACAATATACACTGAAGAGGGTCTCAGAGCCCTTTGGAAAGGTTTGCTTCCGAGGCTTATGAGGATTCCACCTGGTCAGGCTATAATGTGGGCGGTGGCTGATCAGGTGATGGGCCTCTATGAGAGATCATATCTGCAGCCGGCTCATATGTAATCCCCGTACTTAAGTGATGAACTCAAATTTGTTCAGTTCATCACTTTGGATCGGTGGTAGAGGGACAAGGC GTCAAAAACTC AAAATCGTTGATC GGAAAAGTATCTGTTCAATTACCTAGACATTAGATTGTTCATAGCCAAGAGTTGAGTACTGGCCGGAGCAATGAACTGATGTATTCTAAGCAATCAATAATGGTGAAAC GCCCTATTGGATTTTGATACAAGTGTGCTGATGACCGCAATGTATGTAATGGAGTAGTAAATTGCAATAGCGTAGACCTGCCTGTTTTGCTTCTGTGATCAACTGTTCTTTTAGATGCAGAATGCTCAACTG] [+] EMBL AU166516 [ CCCTTNGATGTCGTGAAAACTAGACTGATGGCCCAGGGGAGGAACTGGTNACATCAAGTACAAGGGTATGGTCCACGCGATACGCCCAATAANCACTGAAGAGGGTCTCAGAGCCCTTTGGAAAGGTTTGCTTCCGAGGCTTATGAGGATTCCACCTGGTCAGGCTATAATGTGGGCGGTGGCTGATCAGGTGATGGGCCTCTATGAGAGATCATATCTGCAGCCGGCTCATATGTAATCCCCGTACTTAAGTGATGAACTCAAATTTGTTCAGTTCATCACTTTGGATCGGTGGTAGAGGGACAAGGCGGTCAAAAACTCNNAAATCGTTGATCGGGNAAAGTATCTGTTCAATTACCTAGACATTAGATTGTTCATAGCCAAGAGTTGAGTACTGGCCGGAACAATGAACTGATGTATTCTAAGCAATCAATAATGGTGNAACNGCCCTATTGGATTTAAAAAA ] [+] EMBL AU166518 [ TGATGGCCCAGGGGA GAACTGGTGACATCAAGTACAAGGGTATGGTCCACGCGATACGCACAATATACACTGAAGAGGGTCTCAGAGCCCTTTGGAAAGGTTTGCTTCCGAGGCTTATGAGGATTCCACCTGGTCAGGCTATAATGTGGGCGGTGGCTGATCAGGTGATGGGCCTCTATGAGAGATCATATCTGCAGCCGGCTCATATGTAATCCCCGTACTTAAGTGATGAACTCAAATTTGTTCAGTTCATCACTTTGGATCGGTGGTAGAGGGACAAGGC GTCAAAAACTC AAAATCGTTGATC GGAAAAGTATCTGTTCAATTACCTAGACATTAGATTGTTCATAGCCAAGAGTTGAGTACTGGCCGGAGCAATGAACTGATGTATTCTAAGCAATCAATAATGGTGAAACTGCCCTATTGGATTTTAAAAAA ] [+] EMBL CB682865 [ GCTTCCTAGGCTTATGAGGATTCCACCTGGTCAGGCTATAATGTGGGCGGTGGCTGATCAGGTGATGGGCCTCTATGAGAGATCATATCTGCAGCCGGCTCATATGTAATCCCCGTACTTAAGTGATGAACTCAAATTTGTTCAGTTCATCACTTTGGATCGGTGGTAGAGGGACAAGGC GTCAAAAACTC AAAATCGTTGATC GGAAAAGTATCTGTTCAATTACCTAGACATTAGATTGTTCATAGCCAAGAGTTGAGTACTGGCCGGAGCAATGAACTGATGTATTCTAAGCAATCAATAATGGTGAAAC GCCCT ] [+] EMBL CB685193 [ aTGCAGTTGGGTCATATGTAATCCCCGTACTTAAGTGATGAACTCAAATTTGTTCAGTTCATCACTTTGGATCGGTGGTAGAGGGACAAGGC GTCAAAAACTC AAAATCGTTGATC GGAAAAGTATCTGTTCAATTACCTAGACATTAGATTGTTCATAGCCAAGAGTTGAGTACTGGCCGGAGCAATGAACTGATGTATTCTAATCAATCAATAATGGTGAAAC GCCCT ] consensusID : consensus_10060#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence [TCAAGTACGCGCTCCGCCTCGGCTCCAACGCCGTGCTGCAGTCCGCGTTCAAGGACCCCGGCACGGGCAAGGTCTCCGCGCACGGCCGCCTCGCCTCCGGGTTCGGCGCCGGCGTCCTCGAGGCCCTCCTCATCGTCACCCCCTTCGAGGCAAGATCACCCCTGCATCTGTTCCTTTTTTACTTACCTGGAGTATCTGCGAGATCTTGAATCGTTCTTGAATTCTTGGTTTCTCTGCGACTGCGACATAGTTTATAGAATTTGAATAAAAATGTGTTCACTGCTCCAGCGCGAATAAATTATATTTACAAAGGAACATCTCTAGGTGCTTCTTGCCGGAATAAGAACTCGCGAGAGCTGCCATATAGGACACCGATGTAAAAGTACAAATTCACTACTTTAGATATAGAAAAGGAACGGAGGAACATGGGTGGACCAGTTATTTAATCTTGTCTG] [+] EMBL CF303274 [TCAAGTACGCGCTCCGCCTCGGCTCCAACGCCGTGCTGCAGTCCGCGTTCAAGGACCCCGGCACGGGCAAGGTCTCCGCGCACGGCCGCCTCGCCTCCGGGTTCGGCGCCGGCGTCCTCGAGGCCCTCCTCATCGTCACCCCCTTCGAGGCAAGATCACCCCTGCATCTGTTCCTTTTTTACTTACCTGGAGTATCTGCGAGATCTTGAATCGTTCTTGAATTCTTGGTTTCTCTGCGACTGCGACATAGTTTATAGAATTTGAATAAAAATGTGTTCACTGCTCCAGCGCGAATAAATTATATTTACAAAGGAACATCTCTAGGTGCTTCTTGCCGGAATAAGAACTCGCGAGAGCTGCCATATAGGACACCGATGTAAAAGTACAAATTCACTACTTTAGATATAGAAAAGGAACGGAGGAACATGGGTGGACCAGTTATTTAATCTTGTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10060#0 GGAAACAAATCCAAAACCCGCTTCGTGCGCCACACCCGCTAAGGCCGCCGCCGCTTCTTC 60 consensus_10060#1 ------------------------------------------------------------ consensus_10060#0 CGAAATGGCCGCCGCCGCCGAGTCCCCCTCCTCTTCCCCGCCGCCGCCGCCGATGTCGCC 120 consensus_10060#1 ------------------------------------------------------------ consensus_10060#0 GGCACCGCAGGCCGCTTCGCCGGCGGAGGATCGGCGGGGCGGGAGGGCACCGGTCCCCCC 180 consensus_10060#1 ------------------------------------------------------------ consensus_10060#0 CTACGTGAAGGCGGCGGCGGGGTCGGTCGGCGGCGTGATGGAGGCGTGCTGCCTGCAGCC 240 consensus_10060#1 ------------------------------------------------------------ consensus_10060#0 GATCGACGTCATCAAGACGCGGCTGCAGCTAGACCGCTCGGGGGCGTACCGGGGCATCGC 300 consensus_10060#1 ------------------------------------------------------------ consensus_10060#0 GCACTGCGGCACCACCGTCGTGCGCTCCGAGGGCGTGCGCGCGCTCTGGAAGGGGCTCAC 360 consensus_10060#1 ------------------------------------------------------------ consensus_10060#0 GCCCTTCGCCACCCACCTNACGCTCAAGTACGCGCTCCGCCTNGGCTCCAACGCCGTGCT 420 consensus_10060#1 -----------------------TCAAGTACGCGCTCCGCCTCGGCTCCAACGCCGTGCT 37 ******************* ***************** consensus_10060#0 GCAGTCCGCGTTCAAGGACCCCGGCACGGGCAAGGTCTCCGCGCACGGCCGCCTCGCCTC 480 consensus_10060#1 GCAGTCCGCGTTCAAGGACCCCGGCACGGGCAAGGTCTCCGCGCACGGCCGCCTCGCCTC 97 ************************************************************ consensus_10060#0 CGGGTTCGGCGCCGGCGTCCTCGAGGCCCTCCTCATCGTCACCCCCTTCGAGGTGGTTAA 540 consensus_10060#1 CGGGTTCGGCGCCGGCGTCCTCGAGGCCCTCCTCATCGTCACCCCCTTCGAGGC----AA 153 ***************************************************** ** consensus_10060#0 AATCAGGTTGCAGCAACAAAAAGGTCTAAGCCCTGACCTGCTGAGATATAAGGGGCCAAT 600 consensus_10060#1 GATCA--CCCCTGCATCTGTTCCTTTT--TTACTTACCTGG-AGTATCTGCGAGATCT-T 207 **** * *** * * * ** ***** ** * * * * * consensus_10060#0 ACATTGTGCTAGGACGATTG-TTACTGAGGAGGGTCTTTTTGGCCTGTGGGCTGGAGCAT 659 consensus_10060#1 GAATCGTTCTTGAATTCTTGGTTTCTCTGCGACTGCGACATAGTTTATAGAATTT-GAAT 266 ** ** ** * * *** ** ** * * * * * * * * * ** consensus_10060#0 TACCAACCGTCATGCGTAATGGCACAAACCAAGCCGCAATGTTCACTGCCAAGAATACAT 719 consensus_10060#1 AAAAATGTGTTCACTGCTCCAGCGCGAATAAA----TTATATTTACAA--AGGAACATCT 320 * * ** * ** * ** ** ** ** ** * *** * * consensus_10060#0 TT-GATATTGTTCTCTGGAAGAAGCATGAAGGAGA-TGGGAAGGTTCTCCAGCCATGGCA 777 consensus_10060#1 CTAGGTGCTTCTTGCCGGAATAAGAACTCGCGAGAGCTGCCATATAGGACACCGATGTAA 380 * * * * * * **** *** * **** * * * ** * *** * consensus_10060#0 GTCAATGATTTCA--GGTTTTCTTGCAGGAACTGCAGGTCCGATCTGCACTGGACCCTTC 835 consensus_10060#1 AAGTACAAATTCACTACTTTAGATATAGAAAAGGAACGGAGGAACATGGGTGGACCA--- 437 * * **** *** * ** ** * * * ** * ****** consensus_10060#0 GATGTCGTGAAGACTAGACTGATGGCCCAGGGGAGAACTGGTGACATCAAGTACAAGGGT 895 consensus_10060#1 ---GTTATTTAATCTTGTCTG--------------------------------------- 455 ** * * ** * *** consensus_10060#0 ATGGTCCACGCGATACGCACAATATACACTGAAGAGGGTCTCAGAGCCCTTTGGAAAGGT 955 consensus_10060#1 ------------------------------------------------------------ consensus_10060#0 TTGCTTCCGAGGCTTATGAGGATTCCACCTGGTCAGGCTATAATGTGGGCGGTGGCTGAT 1015 consensus_10060#1 ------------------------------------------------------------ consensus_10060#0 CAGGTGATGGGCCTCTATGAGAGATCATATCTGCAGCCGGCTCATATGTAATCCCCGTAC 1075 consensus_10060#1 ------------------------------------------------------------ consensus_10060#0 TTAAGTGATGAACTCAAATTTGTTCAGTTCATCACTTTGGATCGGTGGTAGAGGGACAAG 1135 consensus_10060#1 ------------------------------------------------------------ consensus_10060#0 GCGTCAAAAACTCAAAATCGTTGATCGGAAAAGTATCTGTTCAATTACCTAGACATTAGA 1195 consensus_10060#1 ------------------------------------------------------------ consensus_10060#0 TTGTTCATAGCCAAGAGTTGAGTACTGGCCGGAGCAATGAACTGATGTATTCTAAGCAAT 1255 consensus_10060#1 ------------------------------------------------------------ consensus_10060#0 CAATAATGGTGAAACGCCCTATTGGATTTTAAAAAAAGTGTGCTGATGACCGCAATGTAT 1315 consensus_10060#1 ------------------------------------------------------------ consensus_10060#0 GTAATGGAGTAGTAAATTGCAATAGCGTAGACCTGCCTGTTTTGCTTCTGTGATCAACTG 1375 consensus_10060#1 ------------------------------------------------------------ consensus_10060#0 TTCTTTTAGATGCAGAATGCTCAACTG 1402 consensus_10060#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||