These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10061#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 556 fasta sequence [GGAGGCGAGGCTGTGCGGTGGTCGCCGACGACGACGAGGAGGAGGAGGATATCGATCGCCGGCGATGGGGTACTGGTGGGACCGCGTCGTGCTTCCGGTGAGGAGGGCGTGGCTCGGCGTCGCCGCCCGATTCGGGGTTCGG-CAGACAGGGCTGTGGAGGCTGAGGCAGGAGGTGAGCACGTGCGAGTACGAGGACGTGCGCGTGATGTGGGAGATGCTGAGCCGCACCAGCACGGCGGGGGCGGGGGCGGGGCGGGCGGCGCCGCCGGC-GAGGAGGCACAGCCGGTTCCGGCAGCCGCGGCCGTGGACCGAGAGCATCTGCCTCTGCGCGGGCTTCTAGAAGGTCTCCCTTGTGGGCTTGTGGCTGTGGCTTAGCTCGTCCTCTTCTCTTCGCGACTTCTCTTTGATTTTTTTT---TTCTTCCTTTTTTTTTCTTTTCTCCGTCTCACTACTGGGCTCTGAGATGTAGTAATCGATTCCTCCTCTTGTATCGATCCGCCTAGATGATACTTGGGGTATGT-GAATGAACAGAGCTGTTTCAGATTATTAAAAAAAAAA] [+] EMBL AK066494 [GGAGGCGAGGCTGTGCGGTGGTCGCCGACGACGACGGGGAGGAGGAGGATATCGATCGCCGGCGATGGGGTACTGGTGGGACCGCGTCGTGCTTCCGGTGAGGAGGGCGTGGCTCGGCGTCGCCGCCCGATTCGGGGTTCGG CAGACAGGGCTGTGGAGGCTGAGGCAGGAGGTGAGCACGTGCGAGTACGAGGACGTGCGCGTGATGTGGGAGATGCTGAGCCGCACCAGCACGGCGGGGGCGGGGGCGGGGCGGGCGGCGCCGCCGGC GAGGAGGCACAGCCGGTTCCGGCAGCCGCGGCCGTGGACCGAGAGCATCTGCCTCTGCGCGGGCTTCTAGAAGGTCTCCCTTGTGGGCTTGTGGCTGTGGCTTAGCTCGTCCTCTTCTCTTCGCGACTTCTCTTTGATTTTTTTT TTCTTCCTTTTTTTTTCTTTTCTCCGTCTCACTACTGGGCTCTGAGATGTAGTAATCGATTCCTCCTCTTGTATCGATCCGCCTAGATGATACTTGGGGTATGT GAATGAACAGAGCT ] [+] EMBL OSC4931 [ GCGGTGGTCGCCGACGACGACGAGGAGGAGGAGGATATCGATCGCCGGCNATGGGGTACTGGTGGGACCGCGTCGTGCTTCCGGTGAGGAGGGCGTGGCTCGGCGTCGCCGCCCGATTCGGGGTTCGG NAGACAGGGCTGTGGAGGCTGAGGCAGGAGGTGAGCACGTNCNANTACGAGGACGTGCGCTTAATGTGGGAGATGCTGAGNCGCACCAGCACGGCGGGGGCGGNGGCGGGGCGGGCGGNGCC CCGGCAAAGGAGGCACAGCCGGTTNCGGCAACCGCGGCCGTG ] [+] EMBL AU076239 [ GTGGTCGCCGACGACGACGAGGAGGAGGAGGATATCGATCGCCGGCGATGGGGTACTGGTGGGACCGCGTCGTGCTTCCGGTGAGGAGGGCGTGGCTCGGCGTCGCCGCCCGATTCGGGGTTCGG CAGACAGGGCTGTGGAGGCTGAGGCAGGAGGTGAGCACGTGCGAGTACGAGGACGTGCGCGTGATGTGGGAGATGCTGAGCCGCACCAGCACGGCGGGGGCNGGGGCGGGGCGGGCGGCGCCGCCGGC GAGGAGGCACANCCGGTTC ] [+] EMBL BI798300 [ ATCGCC GCGATGGGGTACTGGTGGGACCGCGTCGTGCTTCCGGTGAGGAGGGCGTGGCTCGGCGTCGCCGCCCGATTCGGGGTTCGGCCAGACAGGCCTGTGGAGGCTGAGGCAGGAGGTGAGCACGTGCGAGTACGAGGACGTGCGCGTGATGTGGGAGAT CTGA CCGCACCAGCAC GC GGGGCGGGGGCGGGAC GGCGGCGCCGCCGGC GAGGAGGCACAGCCGGTTCCGGCAGCCGCGGCCATGGACCGAGAGCATCTGCCTCTGCGCGGGCTTCTAGAAGGTCTCCCTTGTGGGCTTGTGGCTGTGGCTTAGCTCGTCCTCTTCTCTTCGCGACTTCTCTTTGA TTTTTTT TTCTTCCTTTTTTTTTCTTTTCTCCGTCTCACTACTGGGCTCTGAGATGTAGTAATCGATTCCTCCTCTTGTATCGATCCGCCTAGATGATACTTGGGGTATGTCGAATGAACAGAGCTGTTTCATATTATTAAAAAA ] [+] EMBL AU174426 [ GGCTCGGCGTCNCCGCCCGATTCGGGGTTCGG CAGACAGGGCTGTGGAGGCTNAGGCAGGAGGTGAGCACGTGCGAGTACGAGGACGTGCGCGTGATGTGGGAGATGCTGAGCCGCACCAGCACGGCGGGGGCGGGGGCGGGGCGGGCGGCNCCGCCGGC GAGGAGGCACAGCCGGTTCCGGCANCCGCGGCCGTGGACCGAGAGCATCTGCCTCTGCGCGGGCTTNTAGAAGGTCTCCCTTGTGGGCTTGTGGCTGTGGCTTAGCTCGTCCTCTTCTCTTCGCGACTTCTCTTTGATTTTTTTT TTCTTCCTTTTTTTTTCTTTTCTCCGTCTCACTACTGGGCTCTGAGATGTAGTAATCGATTCCTCCTCTTGTATCGATCCGCCTAGATGATACTTGGGGTATGT GAATGAACAGAGCTGTTTCAGATTATTAAAAAAA ] [+] EMBL AU071269 [ CGGCGCCNCCGGC GAGGNGGCACAGCCGGTTCCGGCAGCCGCGGCCGTGGACCGAGAGCATCTGCCTCTGCGCGGGCTTCTAGAAGGTCTCCCTTGTGGGCTTGTGGCTGTGGCTTAGCTCGTCCTCTTCTCTTCGCGACTTCTCTTTGATTTTTTTTTTCTTCTTCCTTTTTTTTTCTTTTCTCCGTCTCACTACTGGGCTCTGAGATGTNGTAATCGATTCCTCCTCTTGTATCGATCCGCCTAGATGATACTTGGGGTATGT GAATGAACAGAGCTGTTTCNGATTAAAAAAAAAAAAA] consensusID : consensus_10061#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [GGGGCTAACTCCGGCGATGTTTTTTTGGGTTTGTTTGGTCGCAGGGCTGTGGAGGCTGAGGCAGGAGGTGAGCACGTGCGAGTACGAGGACGTGCGCGTGATGTGGGAGATGCTGAGCCGCACCAGCACGGCGGGGGCGGGGGCGGGGCGGGCGGCGCCGCCGGCGAGGAGGCACAGCCGGTTCCGGCAGCCGCGGCCGTGGACCGAGAGCATCTGCCTCTGCGCGGGCTTCTAGAAGGTCTCCCTTGTGGGCTTGTGGCTGTGGCTTAGCTCGTCCTCTTCTCTTCGCGACTTCTCTTTGATTTTTTTTTTTCTTCCTTTTTTTTTCTTTTCTCCGTCTCACTACTGGGCTCTGAGATGTAGTAATCGATTCCTCCTCTTGTATCGATCCGCCTAGATGATACTTGGGGTATGTGAATGAACAGAGCT] [+] EMBL AK107011 [GGGGCTAACTCCGGCGATGTTTTTTTGGGTTTGTTTGGTCGCAGGGCTGTGGAGGCTGAGGCAGGAGGTGAGCACGTGCGAGTACGAGGACGTGCGCGTGATGTGGGAGATGCTGAGCCGCACCAGCACGGCGGGGGCGGGGGCGGGGCGGGCGGCGCCGCCGGCGAGGAGGCACAGCCGGTTCCGGCAGCCGCGGCCGTGGACCGAGAGCATCTGCCTCTGCGCGGGCTTCTAGAAGGTCTCCCTTGTGGGCTTGTGGCTGTGGCTTAGCTCGTCCTCTTCTCTTCGCGACTTCTCTTTGATTTTTTTTTTTCTTCCTTTTTTTTTCTTTTCTCCGTCTCACTACTGGGCTCTGAGATGTAGTAATCGATTCCTCCTCTTGTATCGATCCGCCTAGATGATACTTGGGGTATGTGAATGAACAGAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10061#0 GGAGGCGAGGCTGTGCGGTGGTCGCCGACGACGACGAGGAGGAGGAGGATATCGATCGCC 60 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 GGCGATGGGGTACTGGTGGGACCGCGTCGTGCTTCCGGTGAGGAGGGCGTGGCTCGGCGT 120 consensus_10061#1 --------------------------------------------GGGGCTAACTC--CGG 14 *** * *** ** consensus_10061#0 CGCCGCCCGATTCGGG--GTTCGGCAGACAGGGCTGTGGAGGCTGAGGCAGGAGGTGAGC 178 consensus_10061#1 CGATGTTTTTTTGGGTTTGTTTGGTCG-CAGGGCTGTGGAGGCTGAGGCAGGAGGTGAGC 73 ** * ** ** *** ** * ******************************** consensus_10061#0 ACGTGCGAGTACGAGGACGTGCGCGTGATGTGGGAGATGCTGAGCCGCACCAGCACGGCG 238 consensus_10061#1 ACGTGCGAGTACGAGGACGTGCGCGTGATGTGGGAGATGCTGAGCCGCACCAGCACGGCG 133 ************************************************************ consensus_10061#0 GGGGCGGGGGCGGGGCGGGCGGCGCCGCCGGCGAGGAGGCACAGCCGGTTCCGGCAGCCG 298 consensus_10061#1 GGGGCGGGGGCGGGGCGGGCGGCGCCGCCGGCGAGGAGGCACAGCCGGTTCCGGCAGCCG 193 ************************************************************ consensus_10061#0 CGGCCGTGGACCGAGAGCATCTGCCTCTGCGCGGGCTTCTAGAAGGTCTCCCTTGTGGGC 358 consensus_10061#1 CGGCCGTGGACCGAGAGCATCTGCCTCTGCGCGGGCTTCTAGAAGGTCTCCCTTGTGGGC 253 ************************************************************ consensus_10061#0 TTGTGGCTGTGGCTTAGCTCGTCCTCTTCTCTTCGCGACTTCTCTTTGATTTTTTTTTT- 417 consensus_10061#1 TTGTGGCTGTGGCTTAGCTCGTCCTCTTCTCTTCGCGACTTCTCTTTGATTTTTTTTTTT 313 *********************************************************** consensus_10061#0 CTTCCTTTTTTTTTCTTTTCTCCGTCTCACTACTGGGCTCTGAGATGTAGTAATCGATTC 477 consensus_10061#1 CTTCCTTTTTTTTTCTTTTCTCCGTCTCACTACTGGGCTCTGAGATGTAGTAATCGATTC 373 ************************************************************ consensus_10061#0 CTCCTCTTGTATCGATCCGCCTAGATGATACTTGGGGTATGTGAATGAACAGAGCTGTTT 537 consensus_10061#1 CTCCTCTTGTATCGATCCGCCTAGATGATACTTGGGGTATGTGAATGAACAGAGCT---- 429 ******************************************************** consensus_10061#0 CAGATTATTAAAAAAAAAA 556 consensus_10061#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||