These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1007#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [TTTTTTTTTTTTTTTTTTTAGGAACAATATAATGGTGGGTTAGATTAAGACGGCCATCTTACAAAGAAAATGCCATTTATTACTAAATTCCCTAAAATATTCTAAATGATATTTTAGTACTTTACCAAATAGGGCTACAATATTCAAAACACAAATGGGGGCTGTTGGCATCAAATAATTATTAGGGGTAATGGATCAGCTGCCTATATTATACACATAATTATTTGTACCAATTTATACCAATTTACATGATATGTTAATAGGATAGGGGCACAGACCTGAGATGGCTATAACAATCATCACTGCTCCTGAAGTTCTCCAAGCATGCCCAACAAATGTGACTGCCACATTTACACTCGACATGGTTGCAACCATCAGCTTTCTCGATTGTAAAGTGGCAAGAAGGGCATACCTTCACATTCTCCTTCCCCTTGCGCCATTCAAGCAGAGTTGCATCAGGGTCTTCCTTGGATTCTTTGTATGCCTCACAGGATATGAAAGGATGATATTCAAGATGACACTTGTTGCAGATCTCCACAAAGCAAGCCCCACAGACGAAAGGTTTGCGTTCAGCATTTGCAGCACCCACTTGGTTAATGGATGGGCAATCCGGAGTAGGACAGACACGATATTTTCCCTGCTTAGAAGCACAAATGCTCTCAGGCGGGCCTTATAGCTCT] [+] EMBL CA763229 [TTTTTTTTTTTTTTTTTTTAGGAACAATATAATGGTGGGTTAGATTAAGACGGCCATCTTACAAAGAAAATGCCATTTATTACTAAATTCCCTAAAATATTCTAAATGATATTTTAGTACTTTACCAAATAGGGCTACAATATTCAAAACACAAATGGGGGCTGTTGGCATCAAATAATTATTAGGGGTAATGGATCAGCTGCCTATATTATACACATAATTATTTGTACCAATTTATACCAATTTACATGATATGTTAATAGGATAGGGGCACAGACCTGAGATGGCTATAACAATCATCACTGCTCCTGAAGTTCTCCAAGCATGCCCAACAAATGTGACTGCCACATTTACACTCGACATGGTTGCAACCATCAGCTTTCTCGATTGTAAAGTGGCAAGAAGGGCATACCTTCACATTCTCCTTCCCCTTGCGCCATTCAAGCAGAGTTGCATCAGGGTCTTCCTTGGATTCTTTGTATGCCTCACAGGATATGAAAGGATGATATTCAAGATGACACTTGTTGCAGATCTCCACAAAGCAAGCCCCACAGACGAAAGGTTTGCGTTCAGCATTTGCAGCACCCACTTGGTTAATGGATGGGCAATCCGGAGTAGGACAGACACGATATTTTCCCTGCTTAGAAGCACAAATGCTCTCAGGCGGGCCTTATAGCTCT] consensusID : consensus_1007#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence [TTTTTTTTTTTTTTGTTGGCATCAGATAATTATTAGTGGTAATGGATCAGCTGCCTATATTATACACATAATTATTTGTACCAATTTATACAAATTTACATGATATGTTAATAGGATAGGTGCACAGATTTTTTATGGCTATAACAATCATCACTGCTCCTGAAGTTCTCCAAGCATGCCCAACAAATGTGACTGCCACATTTACACTCGACATGGTTGCAACCATCAGCTTTCTCGATTGTAAAGTGGCAAGAAGGGCATACCTTCACATTCTCCTTCCCCTTGCGCCATTCAAGCAGAGTTGCATCAGGGTCTTCCTTGTATTCTTTGTATGCCTCACAGGATATGAAAGGATGATATTCAAGATGACACTTGTTGCAGATCTCCACAAAGCAAGCCCCACAGACAAAAGGTTTGCTTTCAGCATCTGCAGCAGCCACTTGGTAAATGGATGGGCAATCAGGAGTAGGACAGAAACGATA] [+] EMBL CF326006 [TTTTTTTTTTTTTTGTTGGCATCAGATAATTATTAGTGGTAATGGATCAGCTGCCTATATTATACACATAATTATTTGTACCAATTTATACAAATTTACATGATATGTTAATAGGATAGGTGCACAGATTTTTTATGGCTATAACAATCATCACTGCTCCTGAAGTTCTCCAAGCATGCCCAACAAATGTGACTGCCACATTTACACTCGACATGGTTGCAACCATCAGCTTTCTCGATTGTAAAGTGGCAAGAAGGGCATACCTTCACATTCTCCTTCCCCTTGCGCCATTCAAGCAGAGTTGCATCAGGGTCTTCCTTGTATTCTTTGTATGCCTCACAGGATATGAAAGGATGATATTCAAGATGACACTTGTTGCAGATCTCCACAAAGCAAGCCCCACAGACAAAAGGTTTGCTTTCAGCATCTGCAGCAGCCACTTGGTAAATGGATGGGCAATCAGGAGTAGGACAGAAACGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1007#0 TTTTTTTTTTTTTTTTTTTAGGAACAATATAATGGTGGGTTAGATTAAGACGGCCATCTT 60 consensus_1007#1 ------------------------------------------------------------ consensus_1007#0 ACAAAGAAAATGCCATTTATTACTAAATTCCCTAAAATATTCTAAATGATATTTTAGTAC 120 consensus_1007#1 ------------------------------------------------------------ consensus_1007#0 TTTACCAAATAGGGCTACAATATTCAAAACACAAATGGGGGCTGTTGGCATCAAATAATT 180 consensus_1007#1 -----------------------------TTTTTTTTTTTTTTGTTGGCATCAGATAATT 31 * *********** ****** consensus_1007#0 ATTAGGGGTAATGGATCAGCTGCCTATATTATACACATAATTATTTGTACCAATTTATAC 240 consensus_1007#1 ATTAGTGGTAATGGATCAGCTGCCTATATTATACACATAATTATTTGTACCAATTTATAC 91 ***** ****************************************************** consensus_1007#0 CAATTTACATGATATGTTAATAGGATAGGGGCACAGACCTGAGATGGCTATAACAATCAT 300 consensus_1007#1 AAATTTACATGATATGTTAATAGGATAGGTGCACAGATTTTTTATGGCTATAACAATCAT 151 **************************** ******* * ***************** consensus_1007#0 CACTGCTCCTGAAGTTCTCCAAGCATGCCCAACAAATGTGACTGCCACATTTACACTCGA 360 consensus_1007#1 CACTGCTCCTGAAGTTCTCCAAGCATGCCCAACAAATGTGACTGCCACATTTACACTCGA 211 ************************************************************ consensus_1007#0 CATGGTTGCAACCATCAGCTTTCTCGATTGTAAAGTGGCAAGAAGGGCATACCTTCACAT 420 consensus_1007#1 CATGGTTGCAACCATCAGCTTTCTCGATTGTAAAGTGGCAAGAAGGGCATACCTTCACAT 271 ************************************************************ consensus_1007#0 TCTCCTTCCCCTTGCGCCATTCAAGCAGAGTTGCATCAGGGTCTTCCTTGGATTCTTTGT 480 consensus_1007#1 TCTCCTTCCCCTTGCGCCATTCAAGCAGAGTTGCATCAGGGTCTTCCTTGTATTCTTTGT 331 ************************************************** ********* consensus_1007#0 ATGCCTCACAGGATATGAAAGGATGATATTCAAGATGACACTTGTTGCAGATCTCCACAA 540 consensus_1007#1 ATGCCTCACAGGATATGAAAGGATGATATTCAAGATGACACTTGTTGCAGATCTCCACAA 391 ************************************************************ consensus_1007#0 AGCAAGCCCCACAGACGAAAGGTTTGCGTTCAGCATTTGCAGCACCCACTTGGTTAATGG 600 consensus_1007#1 AGCAAGCCCCACAGACAAAAGGTTTGCTTTCAGCATCTGCAGCAGCCACTTGGTAAATGG 451 **************** ********** ******** ******* ********* ***** consensus_1007#0 ATGGGCAATCCGGAGTAGGACAGACACGATATTTTCCCTGCTTAGAAGCACAAATGCTCT 660 consensus_1007#1 ATGGGCAATCAGGAGTAGGACAGAAACGATA----------------------------- 482 ********** ************* ****** consensus_1007#0 CAGGCGGGCCTTATAGCTCT 680 consensus_1007#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||