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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10085#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1009 fasta sequence
[TTCCATTCCCATTCCTATCCCGAAAGCTCCCAAACCCCAGCCGGCGAGCGACACCGCCGGGCGCGCGAGGCGGCGGCTCACGAGCAGCGCCACCGAGGGCGCGAGCGGCCGGCCGGCCGGACGCCGGGGAGAGTGCCGGTGAGTTCGCGTCTCCCCGCAGCGGCAGCCAGCGAGACGCGGAGCGGCACGAAGACTTCCAGGAAAACATTGGTAGAACTGAAGAATAGACAGATATGGCTTCTGGTGGCATGAAGGACTTTTACCGGCAGAAGAAGAAAGGAGGTCCCACCAAAGCATCGTCATCTTCCAAGAAGAAAACACAGCATTACACTGGAGGGGCCTCTGTTGGGGCCTCAGACACTGCTCAGACATCAGCACTAATTTCTCATGGTAACCTAGATCTTAAAGATGATTTCAGTGAG-CAAGAGGAGCAGTTGCGACTGTTTGATATGGACATGAAGTTTGGCCCTTGCATTGGCGTTACTCGTCTTCAGCGTTGGGAACGTGCTTCTGCCATGGGTCTTCA-CCCACCACCTCATCTCAGGGATCTCTTACTGAACAATACTCATGCAGGCAATCACAATAACAATGGTCCCTCCCTTGAGTGCCTCTGGGAGGGCAAAGTCTAGAACAAACAAATAGTCTGTACTACTGTAAATCCTGCACTGTTCATAGCTACTCGCTATGCCTAGCCCTTCAA-ACCCCACCCCAACTGATGGATGAATCCCTGTATTTCTTCTTAGTCGAGGGCTTTGGGCTCAGTCAATGACCTTGTGTTGTCGCAATCCTTTGTTTCTGCTACGTTTTCTGACAATACTGCAGTGTTTCTTCAGTTTGTTCTTAATCCTAAGCTGTTACTAGTAAAAATAAGGAGAATGAGCTGGCAGTGTATCTCCAGTTTGCCCCAAATCCAATGTTTGCCAAAAGGATAATGTAACTGCTGGTGATTGATGCGAGAAAAAGGAAATATGGAAATAGCCAATTAAGTTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK119678 [TTCCATTCCCATTCCTATCCCGAAAGCTCCCAAACCCCAGCCGGCGAGCGACACCGCCGGGCGCGCGAGGCGGCGGCTCACGAGCAGCGCCACCGAGGGCGCGAGCGGCCGGCCGGCCGGACGCCGGGGAGAGTGCCGGTGAGTTCGCGTCTCCCCGCAGCGGCAGCCAGCGAGACGCGGAGCGGCACGAAGACTTCCAGGAAAACATTGGTAGAACTGAAGAATAGACAGATATGGCTTCTGGTGGCATGAAGGACTTTTACCGGCAGAAGAAGAAAGGAGGTCCCACCAAAGCATCGTCATCTTCCAAGAAGAAAACACAGCATTACACTGGAGGGGCCTCTGTTGGGGCCTCAGACACTGCTCAGACATCAGCACTAATTTCTCATGGTAACCTAGATCTTAAAGATGATTTCAGTGAG CAAGAGGAGCAGTTGCGACTGTTTGATATGGACATGAAGTTTGGCCCTTGCATTGGCGTTACTCGTCTTCAGCGTTGGGAACGTGCTTCTGCCATGGGTCTTCA CCCACCACCTCATCTCAGGGATCTCTTACTGAACAATACTCATGCAGGCAATCACAATAACAATGGTCCCTCCCTTGAGTGCCTCTGGGAGGGCAAAGTCTAGAACAAACAAATAGTCTGTACTACTGTAAATCCTGCACTGTTCATAGCTACTCGCTATGCCTAGCCCTTCAA ACCCCACCCCAACTGATGGATGAATCCCTGTATTTCTTCTTAGTCGAGGGCTTTGGGCTCAGTCAATGACCTTGTGTTGTCGCAATCCTTTGTTTCTGCTACGTTTTCTGACAATACTGCAGTGTTTCTTCAGTTTGTTCTTAATCCTAAGCTGTTACTAGTAAAAATAAGGAGAATGAGCTGGCAGTGTATCTCCAGTTTGCCCCAAATCCAATGTTTGCCAAAAGGATAATGTAACTGCTGGTGATTGATGCGAGAAAAAGGAAATATGGAAATAGC ]
[+] EMBL AK120041 [ CCGAAAGCTCCCAAACCCTAGCCGGCGAGCGACACCGCCGGGCGCGCGAGGCGGCGGCTCACGAGCAGCGCCACCGAGGGCGCGAGCGGCCGGCCGGCCGGACGCCGGGGAGAGTGCCGGTGAGTTCGCGTCTCCCCGCAGCGGCAGCCAGCGAGACGCGGAGCGGCACGA AGGAAAACATTGGTAGAACTGAAGAATAGACAGATATGGCTTCTGGTGGCATGAAGGACTTTTACCGGCAGAAGAAGAAAGGAGGTCCCACCAAAGCATCGTCATCTTCCAAGAAGAAAACACAGCATTACACTGGAGGGGCCTCTGTTGGGGCCTCAGACACTGCTCAGACATCAGCACTAATTTCTCATGGTAACCTAGATCTTAAAGATGATTTCAGTGAG CAAGAGGAGCAGTTGCGACTGTTTGATATGGACATGAAGTTTGGCCCTTGCATTGGCGTTACTCGTCTTCAGCGTTGGGAACGTGCTTCTGCCATGGGTCTTCT CCCACCACCTCATCTCAGGGATCTCTTACTGAACAATACTCATGCAGGCAATCACAATAACAATGGTCCCTCCCTTGAGTGCCTCTGGGAGGGCAAAGTCTAGAACAAACAAATAGTCTGTACTACTGTAAATCCTGCACTGTTCATAGCTACTCGCTATGCCTAGCCCTTCAA ACCCCACCCCAACTGATGGATGAATCCCTGTATTTCTTCTTAGTCGAGGGCTTTGGGCTCAGTCAACGACCTTGTGTTGTCGCAATCCTTTGTTTCTGCTACGTTTTCTGACAATACTGCAGTGTTTCTTCAGTTTGTTCTTAATCCTAAGCTGTTACTAGTAAAAATAAGGAGAATGAGCTGGCAGTGTATCTCCAGTTTGCCCCAAATCCAATGTTTGCCAAAAGGATAATGTAACTGCTGGTGATTGATGC ]
[-] EMBL CA762520 [ ccaggccGAGCCAAGGGGAGCAGTTGCGACTGTTTGATATGGACATGAAGTTTGGCCCTTGCATGGGCGTTACTCGTTTTTAGCGTTGGGAACGTGCTTCTGCCATGGGTCTTCACCCCACCACCTCATCTCAGGGATCTCTTACTGAACAATACTCATGCAGGCAATCACAATAACAATGGTCCCTCCCTTGAGTGCCTCTGGGAGGGCAAAGTCTAGAACAAACAAATAGTCTGTACTACTGTAAATCCTGCCCTGTTCATAGCTACTCGCTATGCCTAGCCCTTCAAGACCCCCCCCCAACTGATGGATGAATCCCTGTATTTTTTTTTAGTCGAGGGCTTTGGGCTCAGTCAATGACCTTGTGTTGTCGCAATCCTTTGTTTTTGCTACGTTTTCTGACAATACTGCAGTGTTTCTTCAGTTTGTTTTTAATCCTAAGCTGTTACTAGTAAAAATAAGGAGAATGAGCTGGCAGTGTATTTCCAGTTTGCCCCAAATCCAATGTTTGCCAAAAGGATAATGTAACTGCTGGTGATTGATGCGAGAAAAAGGAAATATGGAAATAGCCAATTAAGTTAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10085#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 969 fasta sequence
[GTTGCTTACCATGTTTTTGCTGCTTTGTCCTTGAGTTTATGAGGAGTGTTGATTGGGGTTTCCTTTTGTTAAGAACTGCAGTTGAGTGGTCATGAATTGGAGTATGAACCTATAGGTTTCTCACTTCTGATGTTCCCATGTTTTGTATTGTATACTTACTATAGTTCATTTATGCTATTGTTTTGAACATATTTGAAAGTATGTAAACCAAATCCATAAGTCAAAGTTGAAATTTCTCTTGGAAAGACTTCCAGGAAAACATTGGTAGAACTGAAGAATAGACAGATATGGCTTCTGGTGGCATGAAGGACTTTTACCGGCAGAAGAAGAAAGGAGGTCCCACCAAAGCATCGTCATCTTCCAAGAAGAAAACACAGCATTACACTGGAGGGGCCTCTGTTGGGGCCTCAGACACTGCTCAGACATCAGCACTAATTTCTCATGGTAACCTAGATCTTAAAGATGATTTCAGTGAGCAAGAGGAGCAGTTGCGACTGTTTGATATGGACATGAAGTTTGGCCCTTGCATTGGCGTTACTCGTCTTCAGCGTTGGGAACGTGCTTCTGCCATGGGTCTTCACCCACCACCTCATCTCAGGGATCTCTTACTGAACAATACTCA-TGC-AGGCAAT--CACA-A-TAACAA-TGG-TCCCTCCC-TTGAGTGCC-TC-TGGGAGG-GC-AAAGTCTAGAACAAACAAATAGTCTGTACTACTGTAAATCCTGCACTGTTCATAGCTACTCGCTATGCCTAGCCCTTCAAACCCCACCC-CAACTGATGGATGAATCCCTGTATTTCTTCTTAGTCGAGGGCTTTGGGCTC-AGTCAATGACCTTGTGTTGTCGC-AATCCTTTGTTTCTGCTACGTTTTCTGACAATACTGCAGTGTTTCTTCAGTTTGTTCTTAATCCTAAGCTGTTACTAGTANAAAATAAGGAGAATGAGCTGGCAGTGTAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB643949 [GTTGCTTACCATGTTTTTGCTGCTTTGTCCTTGAGTTTATGAGGAGTGTTGATTGGGGTTTCCTTTTGTTAAGAACTGCAGTTGAGTGGTCATGAATTGGAGTATGAACCTATAGGTTTCTCACTTCTGATGTTCCCATGTTTTGTATTGTATACTTACTATAGTTCATTTATGCTATTGTTTTGAACATATTTGAAAGTATGTAAACCAAATCCATAAGTCAAAGTTGAAATTTCTCTTGGAAAGACTTCCAGGAAAACATTGGTAGAACTGAAGAATAGACAGATATGGCTTCTGGTGGCATGAAGGACTTTTACCGGCAGAAGAAGAAAGGAGGTCCCACCAAAGCATCGTCATCTTCCAAGAAGAAAACACAGCATTACACTGGAGGGGCCTCTGTTGGGGCCTCAGACACTGCTCAGACATCAGCACTAATTTCTCATGGTAACCTAGATCTTAAAGATGATTTCAGTGAGCAAGAGGAGCAGTTGCGACTGTTTGATATGGACATGAAGTTTGGCCCTTGCATTGGCGTTACTCGTCTTCAGCGTTGGGAACGTGCTTCTGCCATGGGTCTTCACCCACCACCTCATCTCAGGGATCTCTTACTGAACAATACTCA TGC AGGCAAT CACA A TAACAA TGG TCCCTCCC TTGAGTGCC TC TGGGAGG GC AAAGTCTAGAACAAACAAATAGTCTGTACTACTGTAAATCCTGCACTGTTCATAGCTACTCG ]
[-] EMBL CB643950 [ TATAGGTTTCTCACTTCTGATGTTCCCATGTTTTGTATTGTATACTTACTATAGTTCATTTATGCTATTGTTTTGAACATATTTGAAAGTATGTAAACCAAATCCATAAGTCAAAGTTGAAATTTCTCTTGGAAAGACTTCCAGGAAAACATTGGTAGAACTGAAGAATAGACAGATATGGCTTCTGGTGGCATGAAGGACTTTTACCGGCAGAAGAAGAAAGGAGGTCCCACCAAAGCATCGTCATCTTCCAAGAAGAAAACACAGCATTACACTGGAGGGGCCTCTGTTGGGGCCTCAGACACTGCTCAGACATCAGCACTAATTTCTCATGGTAACCTAGATCTTAAAGATGATTTCAGTGAGCAAGAGGAGCAGTTGCGACTGTTTGATATGGACATGAAGTTTGGCCCTTGCATTGGCGTTACTCGTCTTCAGCGTTGGGAACGTGCTTCTGCCATGGGTCTTCACCCACCACCTCATCTCAGGGATCTCTTACTGAACAATACTCA TGC AGGCAAT CACA A TAACAA TGG TCCCTCCC TTGAGTGCC TC TGGGAGG GC AAAGTCTAGAACAAACAAATAGTCTGTACTACTGTAAATCCTGCACTGTTCATAGCTACTCGCTATGCCTAGCCCTTCAAACCCCACCC CAACTGATGGATGAATCCCTGTATTTCTTCTTAGTCGAGGGCTTTGGGCTC AGTCAATGACCTTGTGTTGTCGC AATCCTTTGTTTCTGCTACGTTTTCTGACAATACTGCAGTGTTTCTTCAGTTTGTTCTTAATCCTAAGCT ]
[+] EMBL OSS2804A [ CAGTTGCGACTGTTTGATATGGACATGAAGTTTGGCCCTTGCATTGGCGTTACTCGTCTTCAGCGTTGGGAACGTGCTTCTGCCATGGGTCTTCACCCACCACCTCATCTCAGGGATCTCTTACTGAACAATACTCA TGC AGGCAAT CACA A TAACAA TGG TCCCTCCC TTGAGTGCC TC TGGGAGG GC AAAGTCTAGAACAAACAAATAGTCTGTACTACTGTAAATCCTGCACTGTTCATAGCTACTCGCTATGCCTAGCCCTTCAAACCCCACCC CAACTGATGGATGAATCCCTGTATTTCTTCTT ]
[+] EMBL AU097200 [ ACTCATTGCAAGGCAATTCCACAGATTNACAATTGGTTCCCTCCCTTTGAGTGCCNTCTTGGGAGGNGCAAAAGTCTAGAACAAACAAATAGTCTGTACTACTGTAAATCCTGCACTGTTCATAGCTACTCGCTATGCCTAGCCCTTCAAACCCCACCCNCAACTGATGGATGAATCCCTGTATTTCTTCTTAGTCGAGGGCTTTGGGCTCGAGTCAATGACCTTGTGTTGTCGCGAATCCTTTGTTTCTGCTACGTTTTCTGACAATACTGCAGTGTTTCTTCAGTTTGTTCTTAATCCTAAGCTGTTACTAGTANAAAATAAGGAGAATGAGCTGGCAGTGTAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10085#0 -----------------------------------------TTCCATTCCCATTCCTATC 19
consensus_10085#1 GTTGCTTACCATGTTTTTGCTGCTTTGTCCTTGAGTTTATGAGGAGTGTTGATTGGGGTT 60
* *** *
consensus_10085#0 CCGAAAGCTCCCAAACCCCAGCCGGCGAGCGAC--ACCGCCGGGCGCGCGAGGCGGCGGC 77
consensus_10085#1 TCCTTTTGTTAAGAACTGCAGTTGAGTGGTCATGAATTGGAGTATGAACCTATAGGTTTC 120
* * *** *** * * * * * * * * ** *
consensus_10085#0 TCACGAGCAGCGCCACCGAGGGCGCGAGCGGCCGGCCGGCCGGACGCCGGGGAGAGTGCC 137
consensus_10085#1 TCACTTCTGATGTTCCC-ATGTTTTGTATTGTATACTTACTATAGTTCATTTATGCTATT 179
**** * ** * * * * * * * * * *
consensus_10085#0 GGTGAGTTCGCGTCTCCCCGCA-----GCGGCAGCCA---GCGAGACGCGGAGCGGCAC- 188
consensus_10085#1 GTTTTGAACATATTTGAAAGTATGTAAACCAAATCCATAAGTCAAAGTTGAAATTTCTCT 239
* * * * * * * * * * *** * * * * * * *
consensus_10085#0 ---GAAGACTTCCAGGAAAACATTGGTAGAACTGAAGAATAGACAGATATGGCTTCTGGT 245
consensus_10085#1 TGGAAAGACTTCCAGGAAAACATTGGTAGAACTGAAGAATAGACAGATATGGCTTCTGGT 299
********************************************************
consensus_10085#0 GGCATGAAGGACTTTTACCGGCAGAAGAAGAAAGGAGGTCCCACCAAAGCATCGTCATCT 305
consensus_10085#1 GGCATGAAGGACTTTTACCGGCAGAAGAAGAAAGGAGGTCCCACCAAAGCATCGTCATCT 359
************************************************************
consensus_10085#0 TCCAAGAAGAAAACACAGCATTACACTGGAGGGGCCTCTGTTGGGGCCTCAGACACTGCT 365
consensus_10085#1 TCCAAGAAGAAAACACAGCATTACACTGGAGGGGCCTCTGTTGGGGCCTCAGACACTGCT 419
************************************************************
consensus_10085#0 CAGACATCAGCACTAATTTCTCATGGTAACCTAGATCTTAAAGATGATTTCAGTGAGCAA 425
consensus_10085#1 CAGACATCAGCACTAATTTCTCATGGTAACCTAGATCTTAAAGATGATTTCAGTGAGCAA 479
************************************************************
consensus_10085#0 GAGGAGCAGTTGCGACTGTTTGATATGGACATGAAGTTTGGCCCTTGCATTGGCGTTACT 485
consensus_10085#1 GAGGAGCAGTTGCGACTGTTTGATATGGACATGAAGTTTGGCCCTTGCATTGGCGTTACT 539
************************************************************
consensus_10085#0 CGTCTTCAGCGTTGGGAACGTGCTTCTGCCATGGGTCTTCACCCACCACCTCATCTCAGG 545
consensus_10085#1 CGTCTTCAGCGTTGGGAACGTGCTTCTGCCATGGGTCTTCACCCACCACCTCATCTCAGG 599
************************************************************
consensus_10085#0 GATCTCTTACTGAACAATACTCATGCAGGCAATCACAATAACAATGGTCCCTCCCTTGAG 605
consensus_10085#1 GATCTCTTACTGAACAATACTCATGCAGGCAATCACAATAACAATGGTCCCTCCCTTGAG 659
************************************************************
consensus_10085#0 TGCCTCTGGGAGGGCAAAGTCTAGAACAAACAAATAGTCTGTACTACTGTAAATCCTGCA 665
consensus_10085#1 TGCCTCTGGGAGGGCAAAGTCTAGAACAAACAAATAGTCTGTACTACTGTAAATCCTGCA 719
************************************************************
consensus_10085#0 CTGTTCATAGCTACTCGCTATGCCTAGCCCTTCAAACCCCACCCCAACTGATGGATGAAT 725
consensus_10085#1 CTGTTCATAGCTACTCGCTATGCCTAGCCCTTCAAACCCCACCCCAACTGATGGATGAAT 779
************************************************************
consensus_10085#0 CCCTGTATTTCTTCTTAGTCGAGGGCTTTGGGCTCAGTCAATGACCTTGTGTTGTCGCAA 785
consensus_10085#1 CCCTGTATTTCTTCTTAGTCGAGGGCTTTGGGCTCAGTCAATGACCTTGTGTTGTCGCAA 839
************************************************************
consensus_10085#0 TCCTTTGTTTCTGCTACGTTTTCTGACAATACTGCAGTGTTTCTTCAGTTTGTTCTTAAT 845
consensus_10085#1 TCCTTTGTTTCTGCTACGTTTTCTGACAATACTGCAGTGTTTCTTCAGTTTGTTCTTAAT 899
************************************************************
consensus_10085#0 CCTAAGCTGTTACTAGTAAAAA-TAAGGAGAATGAGCTGGCAGTGTATCTCCAGTTTGCC 904
consensus_10085#1 CCTAAGCTGTTACTAGTANAAAATAAGGAGAATGAGCTGGCAGTGTAAAAAAAAAAAAAA 959
****************** *** ************************ *
consensus_10085#0 CCAAATCCAATGTTTGCCAAAAGGATAATGTAACTGCTGGTGATTGATGCGAGAAAAAGG 964
consensus_10085#1 AAAAAAAAAA-------------------------------------------------- 969
*** **
consensus_10085#0 AAATATGGAAATAGCCAATTAAGTTAAAAAAAAAAAAAAAAAAAA 1009
consensus_10085#1 ---------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||