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Oryza sativa
cluster # 10089 cluster # 10089       Sequences # 7       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10089#0 length = 2728 sequences # 5  
 consensus_10089#1 length = 636 sequences # 1  
consensus_10089#2 length = 455 sequences # 1  
consensusID : consensus_10089#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2728
fasta sequence 
                              [TCCTCTTTCTCTCTCTCTCGCAAGTCTCGATTACTACCGGGAAGGCCATTCCCAGTGCTCCGACCGCCGCGCCAATCAACCGCCGTCAGCCACCGGACAGCCGGCCGCCGCCGCCGCGCGTCCCACTTGGCCCGCATCGCAACGCCACCAGGGGACGCGACCGCCGCCTCCCCACCCCTCCGGCAACGCCCGCCCGGGGCCGCGGCCGCATCAGCCGCCCGCCGCCGGGGACGCCCATGGCGACGACGCCGGAGACGCTGCCCAACTCGGAGGCCGTCTCCCACGCCTACAAGTTCGCCTCCACCTGGGAGAAGAACGCGCCGCTCACGGAGCAGCAGAATGCCGCGATCGCCGCGCTCTCCCGCGCCGTGTCCGAGCGGCCGTTCCCGGCCAACCTGGAGAAAAGTTTAGTGAAGGATGGGGGTGTGGTTGTGCCAGAAAAAGAGGCTGCATTAGAGGAGGGTGCAATGGATGCAGTCTTGGTGAATACGCATCAGTTCTACAAATGGTTTTCTGAACTGGAATCAGCTATGAAATCTGAGACGGAAGAAAAGTATCGTCTCTACGAGAGTACATTAGAGGAACGTGTTAAAACATGTGATGGTATTCTTCAACAAGTGGATGACACACTGAACTTATTTGAAGAACTGCAATCGTTGCATTTGAGTGTTGCCACAAAGACAAAAACTTTGCACGATGCTTGCGACCAACTTTTGTTGGAGAAACAAAGGCTGATTGAGTTTGCAGAAGCACTTCGAAGTAGGTTGAACTACTTTGATGAATTGGAAAATGTCTCTACTAGCTTTTATTCTCAAACTATGAACATCGGAAATGAACAATTTCTTCCACTTTTGAAACGGCTCGATGATTGTATTTCGTATGTTGAAAATAATCCACAATATGCTGAATCTGCGGTGTACTTGGTTAAGTTTCGCCAACTTCAGTCTCGTGCATTAGGTATGATTCGGTCACATGTCCTGTCAATACTTAAAGCCGCTTCATCCCAGGTTCAAGCGGCGATTCGAGGTAATGGTTCAGCAAAAAATGTTGTTACAGAGGGTGTGGAAGCATCCCTTATCTATGTTCGCTTCAAGGCAGCTGCTAGTGAGCTTAAACCAATCTTAGGTGAGATTGAAAGTAGATCTTCTAGGAAAGAATACACGCAGATTCTTTCAGAATGTCACAGCTTGTTCTGCGAACAGAGGTTATACTTGATACGAGGCATGGTGCAGCAACGAATTTCTGAATTTGCTAGAAAAGAAGCTTTGCCTTCTCTAACAAGATCTGGATGTGCCTATCTGATGGAGGCATGCCAATTTGAGCACCAGCTTTTTGCTCACTTTTTCCCGGCATCTGCATCAGATGTTTCAAGTATTGCTCCTTTAATGGACCCACTGTGCACGTACTTGTATGATACTCTGAGGCCTAGACTGATTTATGAGGGAAGCATTGATTCTCTGTGTGAACTCGTTGACATTCTGAAGGTCGAAGTGCTAGGGGAACAACTAAGTAGACGAGGAGAATCAGTAGCTGGGCTTCGACCCATATTGCAAAGGATACTTGCAGACGTTCATGAGCGGTTGGCCTTTTGTGCTCGGACTCATATTCGTGAGGAGATTGCAAACTTCCGCCCTTCTGATGAAGATCTGGATTATCCTGGAAAGCTTGAGAGATCCGTAGATGCAACTACAAGTTCTAATGTTAGTGGCAACTCGGACATATATGTGACATGGTATAGACCACTGGAGAAAACAGTGTCTTGTCTGTCAAAGCTATATCACCGCTTAGAACCTACAGTTTTTACTGGATTAGCCCAGGAAGCTGTAGAAGTTTGCTCCACATCTCTTCAGAATGCAAGCAAGGTCATTGCAAAAAAAGCAACTGCAATGGATGGACAGCTTTTCCTAATTAAGCACCTTCTTATTTTAAGAGAACAGATTGCTCCATTTGATATTGAGTTTTCTGTCACGCATAAGGAGCTGGATTTCTCCCATTTGCTGGATCACTTAAGAAGGATCCTCAGGGGGCAGGTCTCGTTATTTGATTGGTCAAGGTCAACATCACTTGCTAGGACGTTTTCTCCCCGTGTTCTGGAGAACCAAATTGATGCCAGAAAAGAATTGGAAAAAAGCCTCAAATCTACCTGTGAAGAGTTTATAATGTCCATTACAAAATTAGTAGTGGATCCAATGCTTTCTTTTGTTACTAAGGTAACGGCTGTCAAAGTTGTACTGTCCTCGGGTAGCCAGGGTCAGAAATTGGATTCTGTTCTGGCTAAACCCCTTAAGACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAGGTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGA-GGTTGTATTTGCAAAATCCATCTACGCGG-TTGATTTTATTCAAACCAATCAAGACAAATATAGTTGAGGCTCATATACAGCTACACTCCCTTCTGAAGTCAGAATACACAGCTGACGAAATCCAATCAATTGGTATGTTGCCTATACCCGACCTCCAGTCTCAGCTCGACGCTCTTTTGTAACCGTTATCAAGATGCAAATGCGACCCTACGTTTTGTTCGTTGAGACGGTAAATGGTATCCTGAAGTACAGTAACCCCGTTGTACCAGAGTGATCAGTGATGTTGTAAAAATGTACTATGTTACTGTGGAATGGAGCATCATTCT----TGGAAAAAAAAGAAAAA]

[+] EMBL AK067199             [TCCTCTTTCTCTCTCTCTCGCAAGTCTCGATTACTACCGGGAAGGCCATTCCCAGTGCTCCGACCGCCGCGCCAATCAACCGCCGTCAGCCACCGGACAGCCGGCCGCCGCCGCCGCGCGTCCCACTTGGCCCGCATCGCAACGCCACCAGGGGACGCGACCGCCGCCTCCCCACCCCTCCGGCAACGCCCGCCCGGGGCCGCGGCCGCATCAGCCGCCCGCCGCCGGGGACGCCCATGGCGACGACGCCGGAGACGCTGCCCAACTCGGAGGCCGTCTCCCACGCCTACAAGTTCGCCTCCACCTGGGAGAAGAACGCGCCGCTCACGGAGCAGCAGAATGCCGCGATCGCCGCGCTCTCCCGCGCCGTGTCCGAGCGGCCGTTCCCGGCCAACCTGGAGAAAAGTTTAGTGAAGGATGGGGGTGTGGTTGTGCCAGAAAAAGAGGCTGCATTAGAGGAGGGTGCAATGGATGCAGTCTTGGTGAATACGCATCAGTTCTACAAATGGTTTTCTGAACTGGAATCAGCTATGAAATCTGAGACGGAAGAAAAGTATCGTCTCTACGAGAGTACATTAGAGGAACGTGTTAAAACATGTGATGGTATTCTTCAACAAGTGGATGACACACTGAACTTATTTGAAGAACTGCAATCGTTGCATTTGAGTGTTGCCACAAAGACAAAAACTTTGCACGATGCTTGCGACCAACTTTTGTTGGAGAAACAAAGGCTGATTGAGTTTGCAGAAGCACTTCGAAGTAGGTTGAACTACTTTGATGAATTGGAAAATGTCTCTACTAGCTTTTATTCTCAAACTATGAACATCGGAAATGAACAATTTCTTCCACTTTTGAAACGGCTCGATGATTGTATTTCGTATGTTGAAAATAATCCACAATATGCTGAATCTGCGGTGTACTTGGTTAAGTTTCGCCAACTTCAGTCTCGTGCATTAGGTATGATTCGGTCACATGTCCTGTCAATACTTAAAGCCGCTTCATCCCAGGTTCAAGCGGCGATTCGAGGTAATGGTTCAGCAAAAAATGTTGTTACAGAGGGTGTGGAAGCATCCCTTATCTATGTTCGCTTCAAGGCAGCTGCTAGTGAGCTTAAACCAATCTTAGGTGAGATTGAAAGTAGATCTTCTAGGAAAGAATACACGCAGATTCTTTCAGAATGTCACAGCTTGTTCTGCGAACAGAGGTTATACTTGATACGAGGCATGGTGCAGCAACGAATTTCTGAATTTGCTAGAAAAGAAGCTTTGCCTTCTCTAACAAGATCTGGATGTGCCTATCTGATGGAGGCATGCCAATTTGAGCACCAGCTTTTTGCTCACTTTTTCCCGGCATCTGCATCAGATGTTTCAAGTATTGCTCCTTTAATGGACCCACTGTGCACGTACTTGTATGATACTCTGAGGCCTAGACTGATTTATGAGGGAAGCATTGATTCTCTGTGTGAACTCGTTGACATTCTGAAGGTCGAAGTGCTAGGGGAACAACTAAGTAGACGAGGAGAATCAGTAGCTGGGCTTCGACCCATATTGCAAAGGATACTTGCAGACGTTCATGAGCGGTTGGCCTTTTGTGCTCGGACTCATATTCGTGAGGAGATTGCAAACTTCCGCCCTTCTGATGAAGATCTGGATTATCCTGGAAAGCTTGAGAGATCCGTAGATGCAACTACAAGTTCTAATGTTAGTGGCAACTCGGACATATATGTGACATGGTATAGACCACTGGAGAAAACAGTGTCTTGTCTGTCAAAGCTATATCACCGCTTAGAACCTACAGTTTTTACTGGATTAGCCCAGGAAGCTGTAGAAGTTTGCTCCACATCTCTTCAGAATGCAAGCAAGGTCATTGCAAAAAAAGCAACTGCAATGGATGGACAGCTTTTCCTAATTAAGCACCTTCTTATTTTAAGAGAACAGATTGCTCCATTTGATATTGAGTTTTCTGTCACGCATAAGGAGCTGGATTTCTCCCATTTGCTGGATCACTTAAGAAGGATCCTCAGGGGGCAGGTCTCGTTATTTGATTGGTCAAGGTCAACATCACTTGCTAGGACGTTTTCTCCCCGTGTTCTGGAGAACCAAATTGATGCCAGAAAAGAATTGGAAAAAAGCCTCAAATCTACCTGTGAAGAGTTTATAATGTCCATTACAAAATTAGTAGTGGATCCAATGCTTTCTTTTGTTACTAAGGTAACGGCTGTCAAAGTTGTACTGTCCTCGGGTAGCCAGGGTCAGAAATTGGATTCTGTTCTGGCTAAACCCCTTAAGACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAGGTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGA GGTTGTATTTGCAAAATCCATCTACGCGG TTGATTTTATTCAAACCAATCAAGACAAATATAGTTGAGGCTCATATACAGCTACACTCCCTTCTGAAGTCAGAATACACAGCTGACGAAATCCAATCAATTGGTATGTTGCCTATACCCGACCTCCAGTCTCAGCTCGAGGCTCTTTTGTAACCGTTATCAAGATGCAAATGCGACCCTACGTTTTGTTCGTTGAGACGGTAAATGGTATCCTGAAGTACAGTAACCCCGTTGTACCAGAGTGATCAGTGATGTTGTAAAAATGTACTATGTTACTGTGGAATGGAGCATCAT                        ]
[+] EMBL CB647990             [           TCTCTCTCGCAAGTCTCGATTACTACCGGGAAGGCCATTCCCAGTGCTCCGACCGCCGCGCCAATCAACCGCCGTCAGCCACCGGACAGCCGGCCGCCGCCGCCGCGCGTCCCACTTGGCCCGCATCGCAACGCCACCAGGGGACGCGACCGCCGCCTCCCCACCCCTCCGGCAACGCCCGCCCGGGGCCGCGGCCGCATCAGCCGCCCGCCGCCGGGGACGCCCATGGCGACGACGCCGGAGACGCTGCCCAACTCGGAGGCCGTCTCCCACGCCTACAAGTTCGCCTCCACCTGGGAGAAGAACGCGCCGCTCACGGAGCAGCAGAATGCCGCGATCGCCGCGCTCTCCCGCGCCGTGTCCGAGCGGCCGTTCCCGGCCAACCTGGAGAAAAGTTTAGTGAAGGATGGGGGTGTGGTTGTGCCAGAAAAAGAGGCTGCATTAGAGGAGGGTGCAATGGATGCAGTCTTGGTGAATACGCATCAGTTCTACAAATGGTTTTCTGAACTGGAATCAGCTATGAAATCTGAGACGGAAGAAAAGTATCGTCTCTACGAGAGTACATTAGAGGAACGTGTTAAAACATGTGATGGTATTCTTCAACAAGTGGATGACACACTGAACTTATTTGAAGAACTGCAATCGTTGCATTTGAGTGTTGCCACAAAGACAAAAACTTTGCACGATGCTTGCGACCAACTTTTGTTGGAGACACAAAGGCTGATTGAGTTTGCAGAAGCACTTCGAAGTAGGTTGAACTACTTTGATGAATTGGAAAATGTCTCTACTAGCTTTTATTCTCAAACTATGAACATCGGAAATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CB647991             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGATTGCTCCATTTGATATTGAGTTTTCTGTCACGCATAAGGAGCTGGATTTCTCCCATTTGCTGGATCACTTAAGAAGGATCCTCAGGGGGCAGGTCTCGTTATTTGATTGGTCAAGGTCAACATCACTTGCTAGGACGTTTTCTCCCCGTGTTCTGGAGAACCAAATTGATGCCAGAAAAGAATTGGAAAAAAGCCTCAAATCTACCTGTGAAGAGTTTATAATGTCCATTACAAAATTAGTAGTGGATCCAATGCTTTCTTTTGTTACTAAGGTAACGGCTGTCAAAGTTGTACTGTCCTCGGGTAGCCAGGGTCAGAAATTGGATTCTGTTCTGGCTAAACCCCTTAAGACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAGGTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGA GGTTGTATTTGCAAAATCCATCTACGCGG TTGATTTTATTCAAACCAATCAAGACAAATATAGTTGAGGCTCATATACAGCTACACTCCCTTCTGAAGTCAGAATACACAGCTGACGAAATCCAATCAATTGGTATGTTGCCTATACCCGACCTCCAGTCTCAGCTCGACGCTCTTTTGTAACCGTTATCAAGATGCAAATGCGACCCTACGTTTTGTTCGTTGAGACGGTAAATGGTATCCTGAAGTACAGTAACCCCGTTGTACCAGAGTGATCAGTGATGTTGTAAAAATGTACTATGTTACTGTGGAATGGAGCATCATTCT    TGGAAAAAAAAGAA   ]
[+] EMBL CF315387             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGCTAGGACGTTTTCTCCCCGTGTTCCGGAGAACCAAATTGATGCCAGAAAAGAATTGGAAAAAAGCCTCAAATCTACCTGTGAAGAGTTTATAATGTCCATTACAAAATTAGTAGTGGATCCAATGCTTTCTTTTGTTACTAAGGTAACGGCTGTCAAAGTTGTACTGTCCTCGGGTAGCCAGGGTCAGAAATTGGATTCTGTTCTGGCTAAACCCCTTAAGACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAGGTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGGGTTGTATTTGCAAAATCCATCTACGCGGNTTGATTTTATTCAAACCAATCAAGACAAATATAGTTGAGGCTCATATACAGCTACACTCCCTTCTGAAGTCAGAATACACAGCTGACGAAATCCAATCAATTGGTATGTTGCCTATACCCGACCTCCAGTCTCAGCTCGACGCTCTTTTGTAACCGTTATCAAGATGCAAATGCGACCCTACGTTTT                                                                                                                                   ]
[-] EMBL CA762112             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGACGTTTTCTCNCCGTGTTCTGGAGAACCAAATTGATGCCAGAAAAGAATTGGAAAAAAGCCTCAAATCTACCTGTGAAGAGTTTATAATGTCCATTACAAAATTAGTAGTGGATCCAATGCTTTCTTTTGTTACTAAGGTAACGGCTGTCAAAGTTGCACTGTCCTTGGGTAGCCAGGGTCAGAAATTGGATTCTGTTCTGGCTAAACCCCTTAAGACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAGGTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGA GGTTGTATTTGCAAAATCCATTTACGCGG TTGATTTTATTCAAACCAATCAAGACAAATATAGTTGAGGCTCATATACAGCTACCCTCCCTTTTGAAGTCAGAATACACAGCTGACGAAATCCAATCAATTGGTATGTTGCCTATACCCGACCTCCAGTTTCAGCTCGACGCTCTTTTGTAACCGTTATCAAGATGCAAATGCGACCCTACGTTTTGTTCGTTGAGACGGTAAATGGTATCCTGAAGTACAGTAACCCCGTTGTACCAGAGTGATCAGTGATGTTGTAAAAATGTACTATGTTACTGTGGAATGGAGCATCATTCTTGTGTGGAAAAAAAAAAAAAA]




>consensus_10089#0
TCCTCTTTCTCTCTCTCTCGCAAGTCTCGATTACTACCGGGAAGGCCATTCCCAGTGCTC
CGACCGCCGCGCCAATCAACCGCCGTCAGCCACCGGACAGCCGGCCGCCGCCGCCGCGCG
TCCCACTTGGCCCGCATCGCAACGCCACCAGGGGACGCGACCGCCGCCTCCCCACCCCTC
CGGCAACGCCCGCCCGGGGCCGCGGCCGCATCAGCCGCCCGCCGCCGGGGACGCCCATGG
CGACGACGCCGGAGACGCTGCCCAACTCGGAGGCCGTCTCCCACGCCTACAAGTTCGCCT
CCACCTGGGAGAAGAACGCGCCGCTCACGGAGCAGCAGAATGCCGCGATCGCCGCGCTCT
CCCGCGCCGTGTCCGAGCGGCCGTTCCCGGCCAACCTGGAGAAAAGTTTAGTGAAGGATG
GGGGTGTGGTTGTGCCAGAAAAAGAGGCTGCATTAGAGGAGGGTGCAATGGATGCAGTCT
TGGTGAATACGCATCAGTTCTACAAATGGTTTTCTGAACTGGAATCAGCTATGAAATCTG
AGACGGAAGAAAAGTATCGTCTCTACGAGAGTACATTAGAGGAACGTGTTAAAACATGTG
ATGGTATTCTTCAACAAGTGGATGACACACTGAACTTATTTGAAGAACTGCAATCGTTGC
ATTTGAGTGTTGCCACAAAGACAAAAACTTTGCACGATGCTTGCGACCAACTTTTGTTGG
AGAAACAAAGGCTGATTGAGTTTGCAGAAGCACTTCGAAGTAGGTTGAACTACTTTGATG
AATTGGAAAATGTCTCTACTAGCTTTTATTCTCAAACTATGAACATCGGAAATGAACAAT
TTCTTCCACTTTTGAAACGGCTCGATGATTGTATTTCGTATGTTGAAAATAATCCACAAT
ATGCTGAATCTGCGGTGTACTTGGTTAAGTTTCGCCAACTTCAGTCTCGTGCATTAGGTA
TGATTCGGTCACATGTCCTGTCAATACTTAAAGCCGCTTCATCCCAGGTTCAAGCGGCGA
TTCGAGGTAATGGTTCAGCAAAAAATGTTGTTACAGAGGGTGTGGAAGCATCCCTTATCT
ATGTTCGCTTCAAGGCAGCTGCTAGTGAGCTTAAACCAATCTTAGGTGAGATTGAAAGTA
GATCTTCTAGGAAAGAATACACGCAGATTCTTTCAGAATGTCACAGCTTGTTCTGCGAAC
AGAGGTTATACTTGATACGAGGCATGGTGCAGCAACGAATTTCTGAATTTGCTAGAAAAG
AAGCTTTGCCTTCTCTAACAAGATCTGGATGTGCCTATCTGATGGAGGCATGCCAATTTG
AGCACCAGCTTTTTGCTCACTTTTTCCCGGCATCTGCATCAGATGTTTCAAGTATTGCTC
CTTTAATGGACCCACTGTGCACGTACTTGTATGATACTCTGAGGCCTAGACTGATTTATG
AGGGAAGCATTGATTCTCTGTGTGAACTCGTTGACATTCTGAAGGTCGAAGTGCTAGGGG
AACAACTAAGTAGACGAGGAGAATCAGTAGCTGGGCTTCGACCCATATTGCAAAGGATAC
TTGCAGACGTTCATGAGCGGTTGGCCTTTTGTGCTCGGACTCATATTCGTGAGGAGATTG
CAAACTTCCGCCCTTCTGATGAAGATCTGGATTATCCTGGAAAGCTTGAGAGATCCGTAG
ATGCAACTACAAGTTCTAATGTTAGTGGCAACTCGGACATATATGTGACATGGTATAGAC
CACTGGAGAAAACAGTGTCTTGTCTGTCAAAGCTATATCACCGCTTAGAACCTACAGTTT
TTACTGGATTAGCCCAGGAAGCTGTAGAAGTTTGCTCCACATCTCTTCAGAATGCAAGCA
AGGTCATTGCAAAAAAAGCAACTGCAATGGATGGACAGCTTTTCCTAATTAAGCACCTTC
TTATTTTAAGAGAACAGATTGCTCCATTTGATATTGAGTTTTCTGTCACGCATAAGGAGC
TGGATTTCTCCCATTTGCTGGATCACTTAAGAAGGATCCTCAGGGGGCAGGTCTCGTTAT
TTGATTGGTCAAGGTCAACATCACTTGCTAGGACGTTTTCTCCCCGTGTTCTGGAGAACC
AAATTGATGCCAGAAAAGAATTGGAAAAAAGCCTCAAATCTACCTGTGAAGAGTTTATAA
TGTCCATTACAAAATTAGTAGTGGATCCAATGCTTTCTTTTGTTACTAAGGTAACGGCTG
TCAAAGTTGTACTGTCCTCGGGTAGCCAGGGTCAGAAATTGGATTCTGTTCTGGCTAAAC
CCCTTAAGACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAGGTTG
GGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGGTTGTATTTGCAAA
ATCCATCTACGCGGTTGATTTTATTCAAACCAATCAAGACAAATATAGTTGAGGCTCATA
TACAGCTACACTCCCTTCTGAAGTCAGAATACACAGCTGACGAAATCCAATCAATTGGTA
TGTTGCCTATACCCGACCTCCAGTCTCAGCTCGACGCTCTTTTGTAACCGTTATCAAGAT
GCAAATGCGACCCTACGTTTTGTTCGTTGAGACGGTAAATGGTATCCTGAAGTACAGTAA
CCCCGTTGTACCAGAGTGATCAGTGATGTTGTAAAAATGTACTATGTTACTGTGGAATGG
AGCATCATTCTTGGAAAAAAAAGAAAAA

consensusID : consensus_10089#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 636
fasta sequence 
                              [CGGAGCTGGTTCAAAAGGTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGGTTGTATTTGCAAAATCCATCTACGCGGTTGATTTTATTCAAACCAATCAAGACAAATATAGTTGAGGCTCATATACAGCTACACTCCCTTCTGAAGTCAGAATACACAGCTGACGAAATCCAATCAATTGGTATGTTGCCTATACCCGACCTCCAGTCTCAGCTCGACGCTCTTTTGTAACCGTTATCAAGATGCAAATGCGACCCTACGTTTTGTTCGTTGAGACGGTAAATGGTATCCTGAAGTACAGTAACCCCGTTGTACCAGAGTGATCAGTGATGTTGTAAAAATGTACTATGTTACTGTGGAATGGAGCATCATTCTTGTGTGGAGGTCAGTGTGCACAATGCCATGCTTGACGTGATGTTCCCACTGGGCCAGCAATGGCGGGTCCGTGATTGCGTCTTTTCAGCTAACAAGTTACTGTACACAAGTGGTTCCGTTTGGCCGAGGATAAAGTGNTGGACCACCACCCCCAACCCCTGCAGTTGTATCGTGTGATCACACTTTAATTTCTTCCCTTTTAATAAAAAAAAAAAAAAAAACACTGTCATGCGTTACGTAGCGA]

[-] EMBL CF315386             [CGGAGCTGGTTCAAAAGGTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGGTTGTATTTGCAAAATCCATCTACGCGGTTGATTTTATTCAAACCAATCAAGACAAATATAGTTGAGGCTCATATACAGCTACACTCCCTTCTGAAGTCAGAATACACAGCTGACGAAATCCAATCAATTGGTATGTTGCCTATACCCGACCTCCAGTCTCAGCTCGACGCTCTTTTGTAACCGTTATCAAGATGCAAATGCGACCCTACGTTTTGTTCGTTGAGACGGTAAATGGTATCCTGAAGTACAGTAACCCCGTTGTACCAGAGTGATCAGTGATGTTGTAAAAATGTACTATGTTACTGTGGAATGGAGCATCATTCTTGTGTGGAGGTCAGTGTGCACAATGCCATGCTTGACGTGATGTTCCCACTGGGCCAGCAATGGCGGGTCCGTGATTGCGTCTTTTCAGCTAACAAGTTACTGTACACAAGTGGTTCCGTTTGGCCGAGGATAAAGTGNTGGACCACCACCCCCAACCCCTGCAGTTGTATCGTGTGATCACACTTTAATTTCTTCCCTTTTAATAAAAAAAAAAAAAAAAACACTGTCATGCGTTACGTAGCGA]




>consensus_10089#1
CGGAGCTGGTTCAAAAGGTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCA
TGATGAGGTTGTATTTGCAAAATCCATCTACGCGGTTGATTTTATTCAAACCAATCAAGA
CAAATATAGTTGAGGCTCATATACAGCTACACTCCCTTCTGAAGTCAGAATACACAGCTG
ACGAAATCCAATCAATTGGTATGTTGCCTATACCCGACCTCCAGTCTCAGCTCGACGCTC
TTTTGTAACCGTTATCAAGATGCAAATGCGACCCTACGTTTTGTTCGTTGAGACGGTAAA
TGGTATCCTGAAGTACAGTAACCCCGTTGTACCAGAGTGATCAGTGATGTTGTAAAAATG
TACTATGTTACTGTGGAATGGAGCATCATTCTTGTGTGGAGGTCAGTGTGCACAATGCCA
TGCTTGACGTGATGTTCCCACTGGGCCAGCAATGGCGGGTCCGTGATTGCGTCTTTTCAG
CTAACAAGTTACTGTACACAAGTGGTTCCGTTTGGCCGAGGATAAAGTGNTGGACCACCA
CCCCCAACCCCTGCAGTTGTATCGTGTGATCACACTTTAATTTCTTCCCTTTTAATAAAA
AAAAAAAAAAAAACACTGTCATGCGTTACGTAGCGA

consensusID : consensus_10089#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 455
fasta sequence 
                              [AAAGCCGCGGCCGGAGCGGCGGGGCCCGCCGCGCCAATCAACCGCCGTCGGCCACCGGAAAGCCGGCCGCCACCGCCGCCGCTCTTCCCACTTAGCCCGCATCGCAACGCCACAAGGGGACGCGACCGCCGCCTCCCCACACCTCCGGCAACGCCGCCCGGAGTCGCGGCCGCATCAGCCGCTCGCTGCCGGGGGCGCCAATGGCGACGATTTCGGAGACACTGCCCAACTCGGAGGCCGTCTCCCACGCCTACAAGTTCGCCTCCACCTGGGAGAAGGTCGGTTTCCTCGCTTCGCTGCGTGGTCGGGTGGGTGTGTGGTCCAGTGGTAGCACTGGTGGATCTGGTGGATCTGATCTGATCTGATGGTGATCCAGTGTGTTTGATCCATAGTCCCTGTTGCTTGCGATGACTAAATGTTGTGAACTGATGCTACCATGGTTTGGTTTAGTTTAG]

[+] EMBL AK107872             [AAAGCCGCGGCCGGAGCGGCGGGGCCCGCCGCGCCAATCAACCGCCGTCGGCCACCGGAAAGCCGGCCGCCACCGCCGCCGCTCTTCCCACTTAGCCCGCATCGCAACGCCACAAGGGGACGCGACCGCCGCCTCCCCACACCTCCGGCAACGCCGCCCGGAGTCGCGGCCGCATCAGCCGCTCGCTGCCGGGGGCGCCAATGGCGACGATTTCGGAGACACTGCCCAACTCGGAGGCCGTCTCCCACGCCTACAAGTTCGCCTCCACCTGGGAGAAGGTCGGTTTCCTCGCTTCGCTGCGTGGTCGGGTGGGTGTGTGGTCCAGTGGTAGCACTGGTGGATCTGGTGGATCTGATCTGATCTGATGGTGATCCAGTGTGTTTGATCCATAGTCCCTGTTGCTTGCGATGACTAAATGTTGTGAACTGATGCTACCATGGTTTGGTTTAGTTTAG]




>consensus_10089#2
AAAGCCGCGGCCGGAGCGGCGGGGCCCGCCGCGCCAATCAACCGCCGTCGGCCACCGGAA
AGCCGGCCGCCACCGCCGCCGCTCTTCCCACTTAGCCCGCATCGCAACGCCACAAGGGGA
CGCGACCGCCGCCTCCCCACACCTCCGGCAACGCCGCCCGGAGTCGCGGCCGCATCAGCC
GCTCGCTGCCGGGGGCGCCAATGGCGACGATTTCGGAGACACTGCCCAACTCGGAGGCCG
TCTCCCACGCCTACAAGTTCGCCTCCACCTGGGAGAAGGTCGGTTTCCTCGCTTCGCTGC
GTGGTCGGGTGGGTGTGTGGTCCAGTGGTAGCACTGGTGGATCTGGTGGATCTGATCTGA
TCTGATGGTGATCCAGTGTGTTTGATCCATAGTCCCTGTTGCTTGCGATGACTAAATGTT
GTGAACTGATGCTACCATGGTTTGGTTTAGTTTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10089#0      TCCTCTTTCTCTCTCTCTCGCAAGTCTCGATTACTACCGGGAAGGCCATTCCCAGTGCTC 60
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      CGACCGCCGCGCCAATCAACCGCCGTCAGCCACCGGACAGCCGGCCGCCGCCGCCGCGCG 120
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      TCCCACTTGGCCCGCATCGCAACGCCACCAGGGGACGCGACCGCCGCCTCCCCACCCCTC 180
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      CGGCAACGCCCGCCCGGGGCCGCGGCCGCATCAGCCGCCCGCCGCCGGGGACGCCCATGG 240
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      CGACGACGCCGGAGACGCTGCCCAACTCGGAGGCCGTCTCCCACGCCTACAAGTTCGCCT 300
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      CCACCTGGGAGAAGAACGCGCCGCTCACGGAGCAGCAGAATGCCGCGATCGCCGCGCTCT 360
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      CCCGCGCCGTGTCCGAGCGGCCGTTCCCGGCCAACCTGGAGAAAAGTTTAGTGAAGGATG 420
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      GGGGTGTGGTTGTGCCAGAAAAAGAGGCTGCATTAGAGGAGGGTGCAATGGATGCAGTCT 480
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      TGGTGAATACGCATCAGTTCTACAAATGGTTTTCTGAACTGGAATCAGCTATGAAATCTG 540
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      AGACGGAAGAAAAGTATCGTCTCTACGAGAGTACATTAGAGGAACGTGTTAAAACATGTG 600
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      ATGGTATTCTTCAACAAGTGGATGACACACTGAACTTATTTGAAGAACTGCAATCGTTGC 660
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      ATTTGAGTGTTGCCACAAAGACAAAAACTTTGCACGATGCTTGCGACCAACTTTTGTTGG 720
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      AGAAACAAAGGCTGATTGAGTTTGCAGAAGCACTTCGAAGTAGGTTGAACTACTTTGATG 780
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      AATTGGAAAATGTCTCTACTAGCTTTTATTCTCAAACTATGAACATCGGAAATGAACAAT 840
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      TTCTTCCACTTTTGAAACGGCTCGATGATTGTATTTCGTATGTTGAAAATAATCCACAAT 900
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      ATGCTGAATCTGCGGTGTACTTGGTTAAGTTTCGCCAACTTCAGTCTCGTGCATTAGGTA 960
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      TGATTCGGTCACATGTCCTGTCAATACTTAAAGCCGCTTCATCCCAGGTTCAAGCGGCGA 1020
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      TTCGAGGTAATGGTTCAGCAAAAAATGTTGTTACAGAGGGTGTGGAAGCATCCCTTATCT 1080
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      ATGTTCGCTTCAAGGCAGCTGCTAGTGAGCTTAAACCAATCTTAGGTGAGATTGAAAGTA 1140
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      GATCTTCTAGGAAAGAATACACGCAGATTCTTTCAGAATGTCACAGCTTGTTCTGCGAAC 1200
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      AGAGGTTATACTTGATACGAGGCATGGTGCAGCAACGAATTTCTGAATTTGCTAGAAAAG 1260
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      AAGCTTTGCCTTCTCTAACAAGATCTGGATGTGCCTATCTGATGGAGGCATGCCAATTTG 1320
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      AGCACCAGCTTTTTGCTCACTTTTTCCCGGCATCTGCATCAGATGTTTCAAGTATTGCTC 1380
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      CTTTAATGGACCCACTGTGCACGTACTTGTATGATACTCTGAGGCCTAGACTGATTTATG 1440
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      AGGGAAGCATTGATTCTCTGTGTGAACTCGTTGACATTCTGAAGGTCGAAGTGCTAGGGG 1500
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      AACAACTAAGTAGACGAGGAGAATCAGTAGCTGGGCTTCGACCCATATTGCAAAGGATAC 1560
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      TTGCAGACGTTCATGAGCGGTTGGCCTTTTGTGCTCGGACTCATATTCGTGAGGAGATTG 1620
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      CAAACTTCCGCCCTTCTGATGAAGATCTGGATTATCCTGGAAAGCTTGAGAGATCCGTAG 1680
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      ATGCAACTACAAGTTCTAATGTTAGTGGCAACTCGGACATATATGTGACATGGTATAGAC 1740
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      CACTGGAGAAAACAGTGTCTTGTCTGTCAAAGCTATATCACCGCTTAGAACCTACAGTTT 1800
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      TTACTGGATTAGCCCAGGAAGCTGTAGAAGTTTGCTCCACATCTCTTCAGAATGCAAGCA 1860
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      AGGTCATTGCAAAAAAAGCAACTGCAATGGATGGACAGCTTTTCCTAATTAAGCACCTTC 1920
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      TTATTTTAAGAGAACAGATTGCTCCATTTGATATTGAGTTTTCTGTCACGCATAAGGAGC 1980
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      TGGATTTCTCCCATTTGCTGGATCACTTAAGAAGGATCCTCAGGGGGCAGGTCTCGTTAT 2040
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      TTGATTGGTCAAGGTCAACATCACTTGCTAGGACGTTTTCTCCCCGTGTTCTGGAGAACC 2100
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      AAATTGATGCCAGAAAAGAATTGGAAAAAAGCCTCAAATCTACCTGTGAAGAGTTTATAA 2160
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      TGTCCATTACAAAATTAGTAGTGGATCCAATGCTTTCTTTTGTTACTAAGGTAACGGCTG 2220
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      TCAAAGTTGTACTGTCCTCGGGTAGCCAGGGTCAGAAATTGGATTCTGTTCTGGCTAAAC 2280
consensus_10089#1      ------------------------------------------------------------
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      CCCTTAAGACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAGGTTG 2340
consensus_10089#1      ---------------------------------------CGGAGCTGGTTCAAAAGGTTG 21
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      GGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGGTTGTATTTGCAAA 2400
consensus_10089#1      GGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGGTTGTATTTGCAAA 81
consensus_10089#2      ------------------------------------------------------------
                                                                                   

consensus_10089#0      ATCCATCTACGCGGTTGATTTTATTCAAACCAATCAAGACAAATATAGTTGAGGCTCATA 2460
consensus_10089#1      ATCCATCTACGCGGTTGATTTTATTCAAACCAATCAAGACAAATATAGTTGAGGCTCATA 141
consensus_10089#2      --------------------------------------------AAAGCCGCGGCCGGAG 16
                                                                   * **  * ***     

consensus_10089#0      TACAGCTACACTCCCTTCTGAAGTCAGAATACACAGCTGACGAAATCCAATCAATTGGTA 2520
consensus_10089#1      TACAGCTACACTCCCTTCTGAAGTCAGAATACACAGCTGACGAAATCCAATCAATTGGTA 201
consensus_10089#2      --CGGCGGGGCCCGCCGCGCCAATCA------ACCGCCGTCGGCCACCGGAAAGCCGGC- 67
                         * **    * * *  *   * ***      ** ** * **    **    *   **  

consensus_10089#0      TGTTGCCTATACCCGACCTCCAGTCTCAGCTCGACGCTCTTTTGTAAC-CGTTATCAAGA 2579
consensus_10089#1      TGTTGCCTATACCCGACCTCCAGTCTCAGCTCGACGCTCTTTTGTAAC-CGTTATCAAGA 260
consensus_10089#2      CGCCACCGCCGCC-GCTCTTCCCACTTAGCCCG------CATCGCAACGCCACAAGGGGA 120
                        *   **    ** *  ** *   ** *** **        * * *** *   *    **

consensus_10089#0      TGCAAATGCGACCCTACGTTTTGTTCGTTGAGACGGTAAATGGTATCCTGAAGTACAGTA 2639
consensus_10089#1      TGCAAATGCGACCCTACGTTTTGTTCGTTGAGACGGTAAATGGTATCCTGAAGTACAGTA 320
consensus_10089#2      CGCGACCGCCGCCTCCCCACACCTCCG--GCAACGCCGCCCGGAGTCGCGGC-CGCATCA 177
                        ** *  **  **   *      * **  *  ***      **  **  *     **  *

consensus_10089#0      ACCCCGTTGTACCAGAGTGATCAGTGATGTTG--TAAAAATGTACTATGTTACTGTGGAA 2697
consensus_10089#1      ACCCCGTTGTACCAGAGTGATCAGTGATGTTG--TAAAAATGTACTATGTTACTGTGGAA 378
consensus_10089#2      GCCGCTCGCTGCCGGGGGCGCCAATGGCGACGATTTCGGAGACACTGCCCAACT-CGGA- 235
                        ** *    * ** * *    ** **  *  *  *    *   ***     ***  *** 

consensus_10089#0      TGGAGCATCATTCTTGGAAAAAAAAGAAAAA----------------------------- 2728
consensus_10089#1      TGGAGCATCATTCTTGTGTGGAGGTCAGTGTGCACAATGCCATGCTTGACGTGATGTTCC 438
consensus_10089#2      --GGCCGTCTCCCACGCCTACAAGTTCGCCTCCAC----CTGGGAGAAGGTCGGTTTCCT 289
                         *  * **   *  *     *                                      

consensus_10089#0      ------------------------------------------------------------
consensus_10089#1      CACTGGGCCAGCAATGGCGGGTCCGTGATTGCGTCTTTTCAGCTAACAAGTTACTGTACA 498
consensus_10089#2      CGCTTCGCT-GCGTGGTCGGGTGGGTGTGTG-GTCCAGTGGTAGCACTGGTGGATCTGGT 347
                                                                                   

consensus_10089#0      ------------------------------------------------------------
consensus_10089#1      CAAGTGGTTCCGTTTGGCCGAGGATAAAGTGN---TGGACCACCACCCCCAACCCCTGCA 555
consensus_10089#2      GGATCTGATCTGATCTGATGGTGATCCAGTGTGTTTGATCCATAGTCCCTGTTGCTTGCG 407
                                                                                   

consensus_10089#0      ------------------------------------------------------------
consensus_10089#1      GT---TGTATCGTGTGATCACACTTTAATTTCTTCCCTTTTAATAAAAAAAAAAAAAAAA 612
consensus_10089#2      ATGACTAAATGTTGTGAACTGATGCTACCATGGTTTGGTTTAGTTTAG------------ 455
                                                                                   

consensus_10089#0      ------------------------
consensus_10089#1      ACACTGTCATGCGTTACGTAGCGA 636
consensus_10089#2      ------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)