These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10092#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1022 fasta sequence [GACACTGACATGGATTGAAGGAGTAGAAAATATCTCTCTTCAGTCTTCACCAGTTGATTAATTACTACGACGCCGCATCAAAAGCTCCAGCAATGGCGGCATCTCCTCCGGGCGCCATCGTGATCAACATGGCATCGAACACCAACGGCGAGTCCACGGCGGTGACGACCAATAACTTAGCTCCGTCGACGCCTAAGGCCGTCGATGAGTCCACGACGTCGTCGAAAACAGATGTGGCCACGAAGACGGTGACCGACAAGGTGATGGCAAGCACGGCGAACCTGGCGCAGCTGCTGCCGACGGGGACGGTGCTGGCTTACCAGGCGCTGTCGCCGTCCTTCACCAACCACGGCGAGTGCAACGCCGCCAACAAGTGGCTCACCGCCGTGCTGGTCGGCGTCCTGGCCGGCCTCTCCCTCTTCTTCTCCTTCACGGACAGCGTCGTCGGCCAAGACGGCAAGCTCTACTACGGCGTGGCGACACGGCGGGGATTGAACGTGTTCAACATGTCCCGGGAAGAGGAGGAAGCGAAGAAATTGAGTCACAGTGAGCTAAGACTACGGCCGCTGGACTTCGTGCACTCCTTCTTCACGGCGATGGTGTTCCTCACCGTTGCGTTCAGTGATGTCGGGCTGCAGAACTGCTTCTTCGGGCAGAATCCTGG-CGGCAACACCAAGGA-GCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTCCCGACCAAGAGGAAGGGCATCGGATACAACGACAATA-CACCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCTAGGTCACACGTACATGTCTCTCAAAAATTTCTTGTTAGAATATATATATAATGTAATTAACAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCTTGTATTAATTAATTAGTTTCTTCTATACGCAAAAGCTAAACTGGAATTGTTATTAATAGTTGGGCTTATCGATTAAAAAAAAAA] [+] EMBL CF309004 [GACACTGACATGGATTGAAGGAGTAGAAAATATCTCTCTTCAGTCTTCACCAGTTGATTAATTACTACGACGCCGCATCAAAAGCTCCAGCAATGGCGGCATCTCCTCCGGGCGCCATCGTGATCAACATGGCATCGAACACCAACGGCGAGTCCACGGCGGTGACGACCAATAACTTAGCTCCGTCGACGCCTAAGGCCGTCGATGAGTCCACGACGTCGTCGAAAACAGATGTGGCCACGAAGACGGTGACCGACAAGGTGATGGCAAGCACGGCGAACCTGGCGCAGCTGCTGCCGACGGGGACGGTGCTGGCTTA CAGGCGCTGTCGCCGTCCTTCACCAACCACGGCGAGTGCAACGCCGCCAACAAGTGGCTCACCGCCGTGCTGGTCGGCGTCCTGGCCGGCCTCTCCCTCTTCTTCTCCTTCACGGACAGCGTCGTCGGCCAAGACGGCAAGCTCTACTACGGCGTGGCGACACGGCGGGGATTGAACGTGTTCAACATGTCCCGGGAAGAGGAGGAAGCGAAGAAATTGAGTCACAGTGAGCTAAGACTACGGCCGCTGGACTTCGTGCACTCCTTCTTCACGGCGATGGTGTTCCTCACCGTTGCGTTCAGTGATGTCGGGCTGCAGAACTGCTTCTTCGGGCAGAATCCTG ] [+] EMBL AK108444 [ TCTTCAGTCTTCACCAGTTGATTAATTACTACGACGCCGCATCAAAAGCTCCAGCAATGGCGGCATCTCCTCCGGGCGCCATCGTGATCAACATGGCATCGAACACCAACGGCGAGTCCACGGCGGTGACGACCAATAACTTAGCTCCGTCGACGCCTAAGGCCGTCGATGAGTCCACGACGTCGTCGAAAACAGATGTGGCCACGAAGACGGTGACCGACAAGGTGATGGCAAGCACGGCGAACCTGGCGCAGCTGCTGCCGACGGGGACGGTGCTGGCTTACCAGGCGCTGTCGCCGTCCTTCACCAACCACGGCGAGTGCAACGCCGCCAACAAGTGGCTCACCGCCGTGCTGGTCGGCGTCCTGGCCGGCCTCTCCCTCTTCTTCTCCTTCACGGACAGCGTCGTCGGCCAAGACGGCAAGCTCTACTACGGCGTGGCGACACGGCGGGGATTGAACGTGTTCAACATGTCCCGGGAAGAGGAGGAAGCGAAGAAATTGAGTCACAGTGAGCTAAGACTACGGCCGCTGGACTTCGTGCACTCCTTCTTCACGGCGATGGTGTTCCTCACCGTTGCGTTCAGTGATGTCGGGCTGCAGAACTGCTTCTTCGGGCAGAATCCTGG CGGCAACACCAAGGA GCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTCCCGACCAAGAGGAAGGGCATCGGATACAACGACAATA CACCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCTAGGTCACACGTACATGTCTCTCAAAAATTTCTTGTTAGAATATATATATAATGTAATTAACAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCT ] [+] EMBL BE228964 [ gagcaCAATGGCGGCATCTCCTCCGGGCGCCATCGTGATCAACATGGCATCGAACACCAACGGCGAGTCCACGGCGGTGACGACCAATAACTTAGCTCCGTCGACGCCTAAGGCCGCCGATGAGTCCACGACGTCGTCGAGAACAGATGTGGCCACGAAGACGGT ACCGACAAGGTGATGGCAAGCACGGCGAACCTGGCGCANCTGCTGCCGACGGGGACGGTGCTGGCTTACCAAGCGCTGTCGCCGTCCTTCACCAACCACGGCGAGTGCAACGCCGCCAACAAGTGGCTCACCGCCGTGCTGGTCGGCGTCCTGGCCGGCCTCTCCCTCTTCTTCTCCTTCACGGACAGCGTCGTCGGCCAAGAC GCAAGCTCTNCTACGGCGTGGCGACACGGCGGGGATTGAACGTGTTCAACATGT CCGGGAAGAAGAAGAA CNAAGAAATTGAATC CAGTGAGCTAAGACTACNGCCGCTGGACTTCNTGCACTCCTTCTTCNCGGCGANAGTGTTCCTCACCGTTGC TTCAATGATGTCNGGCTGCA AAATGCTTCTTCCGGCAGAATCCTGGCCGGCAANAC ] [+] EMBL CA764383 [ CACGGCGAACCTGGCGCAGCTGCTGCCGACGGGGACGGTGCTGGCTTACCAGGCGCTGTCGCCGTCCTTCACCAACCACGGCGAGTGCAACGCCGCCAACAAGTGGCTCACCGCCGTGCTGGTCGGCGTCCTGGCCGGCCTCTCCCTCTTCTTCTCCTTCACGGACAGCGTCGTCGGCCAAGACGGCAAGCTCTACTACGGCGTGGCGACACGGCGGGGATTGAACGTGTTCAACATGTCCCGGGAAGAGGAGGAAGCGAAGAAATTGAGTCACAGTGAGCTAAGACTACGGCCGCTGGACTTCGTGCACTCCTTCTTCACGGCGATGGTGTTCCTCACCGTTGCGTTCAGTGATGTCGGGCTGCAGAACTGCTTCTTCGGGCAGAATCCTGG CGGCAACACCAAGGA GCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTCCCGACCAAGAGGAAGGGCATCGGATACAACGACAATA CACCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCTAGGTCACACGTACATGTCTCTCAAAAAATTCTTGGTAGA ATATATATAATGTAATTAACAAGTATTTGATTGGAGATCAGNTAATTAAANTATGNCTTGga ] [-] EMBL CF309005 [ CGTCGTCGGCCAAGACGGCAAGCTCTACTACGGCGTGGCGACACGGCGGGGATTGAACGTGTTCAACATGTCCCGGGAAGAGGAGGAAGCGAAGAAATTGAGTCACAGTGAGCTAAGACTACGGCCGCTGGACTTCGTGCACTCCTTCTTCACGGCGATGGTGTTCCTCACCGTTGCGTTCAGTGATGTCGGGCTGCAGAACTGCTTCTTCGGGCAGAATCCTGG CGGCAACACCAAGGA GCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTCCCGACCAAGAGGAAGGGCATCGGATACAACGACAATA CACCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCTAGGTCACACGTACATGTCTCTCAAAAATTTCTTGTTAGAATATATATATAATGTAATTAACAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCTTGTATTAATTAATTAGTTTCTTCTATACGCAAAAGCTAAACTGGAATTGTTATTAATAGTTGGGCTTATCGATTAAAAAAAAAA] [-] EMBL CF297723 [ GGTGTTCCTCACCGTTGCGTTCAGTGATGTCGGGCTGCAGAACTGCTTCTTCGGGCAGAATCCTGG CGGCAACACCAAGGANGCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTCCCGACCAAGAGGAAGGGCATCGGATACAACGACAATANCACCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCTAGGTCACACGTACATGTCTCTCAAAAATTTCTTGTTAGAATATATATATAATGTAATTAACAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCCTGTATTAATTAAaaaaa ] consensusID : consensus_10092#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence [CCCAAGATCCGGGTCGTTGGTATAACCCACCTCCCATGTGAGGCGGCCCGTATTTCGAACTACACAATAGGCGCGAATTGGGGTCCTGCCCCCCCCCCCGGGGGTCGACCGGCATTCGATAAGCTTGATTAGTGAGCCGCAGGCCCAGCCCAACCGGATTGAACGTGTTCCCACCTGTCCCGGGAAGAGGAGCAACCGAAGCACGTGCGTCACAGTGAGCTAAGACTTCGGCCCATGGCCTTCGTGCACTCCTTCTTCACGGCGATGGTGTTTCTCACCGTTGCGTTCAGTGATGTCGGCCTGCACAACTACTTCTTCGGGCAGAATCCTGGCGGCAACAGCAAGGAGCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTACCGACCAAGAGGAAGGGCATTGGATACAACGTCAATACACCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCTAGGCCACACGTACATGTCTCTCAAAAAAATTCTTGTTAGAATATATATATAATGTAATTAGCAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCTTGTCTTAATTAATTAGTTTCTTCTATACGCAAAAGCTAACCTGGAATTGTTATTAATAGTTGGGCCTATCGATTATATTGATATAAAAAAAAAGAAAAA] [-] EMBL CA760105 [CCCAAGATCCGGGTCGTTGGTATAACCCACCTCCCATGTGAGGCGGCCCGTATTTCGAACTACACAATAGGCGCGAATTGGGGTCCTGCCCCCCCCCCCGGGGGTCGACCGGCATTCGATAAGCTTGATTAGTGAGCCGCAGGCCCAGCCCAACCGGATTGAACGTGTTCCCACCTGTCCCGGGAAGAGGAGCAACCGAAGCACGTGCGTCACAGTGAGCTAAGACTTCGGCCCATGGCCTTCGTGCACTCCTTCTTCACGGCGATGGTGTTTCTCACCGTTGCGTTCAGTGATGTCGGCCTGCACAACTACTTCTTCGGGCAGAATCCTGGCGGCAACAGCAAGGAGCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTACCGACCAAGAGGAAGGGCATTGGATACAACGTCAATACACCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCTAGGCCACACGTACATGTCTCTCAAAAAAATTCTTGTTAGAATATATATATAATGTAATTAGCAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCTTGTCTTAATTAATTAGTTTCTTCTATACGCAAAAGCTAACCTGGAATTGTTATTAATAGTTGGGCCTATCGATTATATTGATATAAAAAAAAAGAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10092#0 GACACTGACATGGATTGAAGGAGTAGAAAATATCTCTCTTCAGTCTTCACCAGTTGATTA 60 consensus_10092#1 ------------------------------------------------------------ consensus_10092#0 ATTACTACGACGCCGCATCAAAAGCTCCAGCAATGGCGGCATCTCCTCCGGGCGCCATCG 120 consensus_10092#1 ------------------------------------------------------------ consensus_10092#0 TGATCAACATGGCATCGAACACCAACGGCGAGTCCACGGCGGTGACGACCAATAACTTAG 180 consensus_10092#1 ------------------------------------------------------------ consensus_10092#0 CTCCGTCGACGCCTAAGGCCGTCGATGAGTCCACGACGTCGTCGAAAACAGATGTGGCCA 240 consensus_10092#1 ------------------------------------------------------------ consensus_10092#0 CGAAGACGGTGACCGACAAGGTGATGGCAAGCACGGCGAACCTGGCGCAGCTGCTGCCGA 300 consensus_10092#1 ------------------------------------------------------------ consensus_10092#0 CGGGGACGGTGCTGGCTTACCAGGCGCTGTCGCCGTCCTTCACCAACCACGGCGAGTGCA 360 consensus_10092#1 -----------CCCAAGATCCGGGT--CGTTGGTATAACCCACCTCCCATG-TGAG-GCG 45 * ** ** ** * * **** *** * *** ** consensus_10092#0 ACGCCGCCAACAAGTGGCTCACCGCCGTGCTGGTCGGCGTCCTGGCCGGCCTCTCCCTCT 420 consensus_10092#1 GCCCGTATTTCGAACTACACAATAG-GCGCGAATTGGGGTCCTGCCCCCCCCCCCGGGGG 104 * * * * * ** * ** * ** ****** ** ** * * consensus_10092#0 TCTTCTCCTTCACGGACAGCGTCGTCGGCCAAGACGGCAAGCTCTACTACGGCGTGGCGA 480 consensus_10092#1 TCGACCGGCATTCGATAAGCTTGATTAGTGA--GCCGCAGGCCCAGCC---------CAA 153 ** * ** *** * * * * * *** ** * * * * consensus_10092#0 CACGGCGGGGATTGAACGTGTTCA-ACATGTCCCGGGAAGAGGAGGAAGCGAAGAAATTG 539 consensus_10092#1 C------CGGATTGAACGTGTTCCCACCTGTCCCGGGAAGAGGAGCAACCGAAGCACGTG 207 * *************** ** ***************** ** ***** * ** consensus_10092#0 AGTCACAGTGAGCTAAGACTACGGCCGCTGGACTTCGTGCACTCCTTCTTCACGGCGATG 599 consensus_10092#1 CGTCACAGTGAGCTAAGACTTCGGCCCATGGCCTTCGTGCACTCCTTCTTCACGGCGATG 267 ******************* ***** *** **************************** consensus_10092#0 GTGTTCCTCACCGTTGCGTTCAGTGATGTCGGGCTGCAGAACTGCTTCTTCGGGCAGAAT 659 consensus_10092#1 GTGTTTCTCACCGTTGCGTTCAGTGATGTCGGCCTGCACAACTACTTCTTCGGGCAGAAT 327 ***** ************************** ***** **** **************** consensus_10092#0 CCTGGCGGCAACACCAAGGAGCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCG 719 consensus_10092#1 CCTGGCGGCAACAGCAAGGAGCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCG 387 ************* ********************************************** consensus_10092#0 AGCTTCGTCTTCTTGATCTTCCCGACCAAGAGGAAGGGCATCGGATACAACGACAATACA 779 consensus_10092#1 AGCTTCGTCTTCTTGATCTTACCGACCAAGAGGAAGGGCATTGGATACAACGTCAATACA 447 ******************** ******************** ********** ******* consensus_10092#0 CCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCT 839 consensus_10092#1 CCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCT 507 ************************************************************ consensus_10092#0 AGGTCACACGTACATGTCTCTCAAAAAT-TTCTTGTTAGAATATATATATAATGTAATTA 898 consensus_10092#1 AGGCCACACGTACATGTCTCTCAAAAAAATTCTTGTTAGAATATATATATAATGTAATTA 567 *** *********************** ******************************* consensus_10092#0 ACAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCTTGTATTAATTAATTAGTTTC 958 consensus_10092#1 GCAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCTTGTCTTAATTAATTAGTTTC 627 ****************************************** **************** consensus_10092#0 TTCTATACGCAAAAGCTAAACTGGAATTGTTATTAATAGTTGGGCTTATCGATTA----- 1013 consensus_10092#1 TTCTATACGCAAAAGCTAACCTGGAATTGTTATTAATAGTTGGGCCTATCGATTATATTG 687 ******************* ************************* ********* consensus_10092#0 ----AAAAAAAAA------ 1022 consensus_10092#1 ATATAAAAAAAAAGAAAAA 706 ********* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||