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Oryza sativa
cluster # 10092 cluster # 10092       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10092#0 length = 1022 sequences # 6  
consensus_10092#1 length = 706 sequences # 1  

consensusID : consensus_10092#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1022
fasta sequence
                              [GACACTGACATGGATTGAAGGAGTAGAAAATATCTCTCTTCAGTCTTCACCAGTTGATTAATTACTACGACGCCGCATCAAAAGCTCCAGCAATGGCGGCATCTCCTCCGGGCGCCATCGTGATCAACATGGCATCGAACACCAACGGCGAGTCCACGGCGGTGACGACCAATAACTTAGCTCCGTCGACGCCTAAGGCCGTCGATGAGTCCACGACGTCGTCGAAAACAGATGTGGCCACGAAGACGGTGACCGACAAGGTGATGGCAAGCACGGCGAACCTGGCGCAGCTGCTGCCGACGGGGACGGTGCTGGCTTACCAGGCGCTGTCGCCGTCCTTCACCAACCACGGCGAGTGCAACGCCGCCAACAAGTGGCTCACCGCCGTGCTGGTCGGCGTCCTGGCCGGCCTCTCCCTCTTCTTCTCCTTCACGGACAGCGTCGTCGGCCAAGACGGCAAGCTCTACTACGGCGTGGCGACACGGCGGGGATTGAACGTGTTCAACATGTCCCGGGAAGAGGAGGAAGCGAAGAAATTGAGTCACAGTGAGCTAAGACTACGGCCGCTGGACTTCGTGCACTCCTTCTTCACGGCGATGGTGTTCCTCACCGTTGCGTTCAGTGATGTCGGGCTGCAGAACTGCTTCTTCGGGCAGAATCCTGG-CGGCAACACCAAGGA-GCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTCCCGACCAAGAGGAAGGGCATCGGATACAACGACAATA-CACCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCTAGGTCACACGTACATGTCTCTCAAAAATTTCTTGTTAGAATATATATATAATGTAATTAACAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCTTGTATTAATTAATTAGTTTCTTCTATACGCAAAAGCTAAACTGGAATTGTTATTAATAGTTGGGCTTATCGATTAAAAAAAAAA]

[+] EMBL CF309004             [GACACTGACATGGATTGAAGGAGTAGAAAATATCTCTCTTCAGTCTTCACCAGTTGATTAATTACTACGACGCCGCATCAAAAGCTCCAGCAATGGCGGCATCTCCTCCGGGCGCCATCGTGATCAACATGGCATCGAACACCAACGGCGAGTCCACGGCGGTGACGACCAATAACTTAGCTCCGTCGACGCCTAAGGCCGTCGATGAGTCCACGACGTCGTCGAAAACAGATGTGGCCACGAAGACGGTGACCGACAAGGTGATGGCAAGCACGGCGAACCTGGCGCAGCTGCTGCCGACGGGGACGGTGCTGGCTTA CAGGCGCTGTCGCCGTCCTTCACCAACCACGGCGAGTGCAACGCCGCCAACAAGTGGCTCACCGCCGTGCTGGTCGGCGTCCTGGCCGGCCTCTCCCTCTTCTTCTCCTTCACGGACAGCGTCGTCGGCCAAGACGGCAAGCTCTACTACGGCGTGGCGACACGGCGGGGATTGAACGTGTTCAACATGTCCCGGGAAGAGGAGGAAGCGAAGAAATTGAGTCACAGTGAGCTAAGACTACGGCCGCTGGACTTCGTGCACTCCTTCTTCACGGCGATGGTGTTCCTCACCGTTGCGTTCAGTGATGTCGGGCTGCAGAACTGCTTCTTCGGGCAGAATCCTG                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK108444             [                                    TCTTCAGTCTTCACCAGTTGATTAATTACTACGACGCCGCATCAAAAGCTCCAGCAATGGCGGCATCTCCTCCGGGCGCCATCGTGATCAACATGGCATCGAACACCAACGGCGAGTCCACGGCGGTGACGACCAATAACTTAGCTCCGTCGACGCCTAAGGCCGTCGATGAGTCCACGACGTCGTCGAAAACAGATGTGGCCACGAAGACGGTGACCGACAAGGTGATGGCAAGCACGGCGAACCTGGCGCAGCTGCTGCCGACGGGGACGGTGCTGGCTTACCAGGCGCTGTCGCCGTCCTTCACCAACCACGGCGAGTGCAACGCCGCCAACAAGTGGCTCACCGCCGTGCTGGTCGGCGTCCTGGCCGGCCTCTCCCTCTTCTTCTCCTTCACGGACAGCGTCGTCGGCCAAGACGGCAAGCTCTACTACGGCGTGGCGACACGGCGGGGATTGAACGTGTTCAACATGTCCCGGGAAGAGGAGGAAGCGAAGAAATTGAGTCACAGTGAGCTAAGACTACGGCCGCTGGACTTCGTGCACTCCTTCTTCACGGCGATGGTGTTCCTCACCGTTGCGTTCAGTGATGTCGGGCTGCAGAACTGCTTCTTCGGGCAGAATCCTGG CGGCAACACCAAGGA GCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTCCCGACCAAGAGGAAGGGCATCGGATACAACGACAATA CACCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCTAGGTCACACGTACATGTCTCTCAAAAATTTCTTGTTAGAATATATATATAATGTAATTAACAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCT                                                                                    ]
[+] EMBL BE228964             [                                                                                     gagcaCAATGGCGGCATCTCCTCCGGGCGCCATCGTGATCAACATGGCATCGAACACCAACGGCGAGTCCACGGCGGTGACGACCAATAACTTAGCTCCGTCGACGCCTAAGGCCGCCGATGAGTCCACGACGTCGTCGAGAACAGATGTGGCCACGAAGACGGT ACCGACAAGGTGATGGCAAGCACGGCGAACCTGGCGCANCTGCTGCCGACGGGGACGGTGCTGGCTTACCAAGCGCTGTCGCCGTCCTTCACCAACCACGGCGAGTGCAACGCCGCCAACAAGTGGCTCACCGCCGTGCTGGTCGGCGTCCTGGCCGGCCTCTCCCTCTTCTTCTCCTTCACGGACAGCGTCGTCGGCCAAGAC GCAAGCTCTNCTACGGCGTGGCGACACGGCGGGGATTGAACGTGTTCAACATGT CCGGGAAGAAGAAGAA CNAAGAAATTGAATC CAGTGAGCTAAGACTACNGCCGCTGGACTTCNTGCACTCCTTCTTCNCGGCGANAGTGTTCCTCACCGTTGC TTCAATGATGTCNGGCTGCA AAATGCTTCTTCCGGCAGAATCCTGGCCGGCAANAC                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CA764383             [                                                                                                                                                                                                                                                                               CACGGCGAACCTGGCGCAGCTGCTGCCGACGGGGACGGTGCTGGCTTACCAGGCGCTGTCGCCGTCCTTCACCAACCACGGCGAGTGCAACGCCGCCAACAAGTGGCTCACCGCCGTGCTGGTCGGCGTCCTGGCCGGCCTCTCCCTCTTCTTCTCCTTCACGGACAGCGTCGTCGGCCAAGACGGCAAGCTCTACTACGGCGTGGCGACACGGCGGGGATTGAACGTGTTCAACATGTCCCGGGAAGAGGAGGAAGCGAAGAAATTGAGTCACAGTGAGCTAAGACTACGGCCGCTGGACTTCGTGCACTCCTTCTTCACGGCGATGGTGTTCCTCACCGTTGCGTTCAGTGATGTCGGGCTGCAGAACTGCTTCTTCGGGCAGAATCCTGG CGGCAACACCAAGGA GCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTCCCGACCAAGAGGAAGGGCATCGGATACAACGACAATA CACCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCTAGGTCACACGTACATGTCTCTCAAAAAATTCTTGGTAGA  ATATATATAATGTAATTAACAAGTATTTGATTGGAGATCAGNTAATTAAANTATGNCTTGga                                                                                ]
[-] EMBL CF309005             [                                                                                                                                                                                                                                                                                                                                                                                                                                                       CGTCGTCGGCCAAGACGGCAAGCTCTACTACGGCGTGGCGACACGGCGGGGATTGAACGTGTTCAACATGTCCCGGGAAGAGGAGGAAGCGAAGAAATTGAGTCACAGTGAGCTAAGACTACGGCCGCTGGACTTCGTGCACTCCTTCTTCACGGCGATGGTGTTCCTCACCGTTGCGTTCAGTGATGTCGGGCTGCAGAACTGCTTCTTCGGGCAGAATCCTGG CGGCAACACCAAGGA GCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTCCCGACCAAGAGGAAGGGCATCGGATACAACGACAATA CACCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCTAGGTCACACGTACATGTCTCTCAAAAATTTCTTGTTAGAATATATATATAATGTAATTAACAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCTTGTATTAATTAATTAGTTTCTTCTATACGCAAAAGCTAAACTGGAATTGTTATTAATAGTTGGGCTTATCGATTAAAAAAAAAA]
[-] EMBL CF297723             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGTGTTCCTCACCGTTGCGTTCAGTGATGTCGGGCTGCAGAACTGCTTCTTCGGGCAGAATCCTGG CGGCAACACCAAGGANGCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTCCCGACCAAGAGGAAGGGCATCGGATACAACGACAATANCACCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCTAGGTCACACGTACATGTCTCTCAAAAATTTCTTGTTAGAATATATATATAATGTAATTAACAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCCTGTATTAATTAAaaaaa                                                                   ]


>consensus_10092#0 GACACTGACATGGATTGAAGGAGTAGAAAATATCTCTCTTCAGTCTTCACCAGTTGATTA ATTACTACGACGCCGCATCAAAAGCTCCAGCAATGGCGGCATCTCCTCCGGGCGCCATCG TGATCAACATGGCATCGAACACCAACGGCGAGTCCACGGCGGTGACGACCAATAACTTAG CTCCGTCGACGCCTAAGGCCGTCGATGAGTCCACGACGTCGTCGAAAACAGATGTGGCCA CGAAGACGGTGACCGACAAGGTGATGGCAAGCACGGCGAACCTGGCGCAGCTGCTGCCGA CGGGGACGGTGCTGGCTTACCAGGCGCTGTCGCCGTCCTTCACCAACCACGGCGAGTGCA ACGCCGCCAACAAGTGGCTCACCGCCGTGCTGGTCGGCGTCCTGGCCGGCCTCTCCCTCT TCTTCTCCTTCACGGACAGCGTCGTCGGCCAAGACGGCAAGCTCTACTACGGCGTGGCGA CACGGCGGGGATTGAACGTGTTCAACATGTCCCGGGAAGAGGAGGAAGCGAAGAAATTGA GTCACAGTGAGCTAAGACTACGGCCGCTGGACTTCGTGCACTCCTTCTTCACGGCGATGG TGTTCCTCACCGTTGCGTTCAGTGATGTCGGGCTGCAGAACTGCTTCTTCGGGCAGAATC CTGGCGGCAACACCAAGGAGCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCGA GCTTCGTCTTCTTGATCTTCCCGACCAAGAGGAAGGGCATCGGATACAACGACAATACAC CCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCTA GGTCACACGTACATGTCTCTCAAAAATTTCTTGTTAGAATATATATATAATGTAATTAAC AAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCTTGTATTAATTAATTAGTTTCTT CTATACGCAAAAGCTAAACTGGAATTGTTATTAATAGTTGGGCTTATCGATTAAAAAAAA AA



consensusID : consensus_10092#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 706
fasta sequence
                              [CCCAAGATCCGGGTCGTTGGTATAACCCACCTCCCATGTGAGGCGGCCCGTATTTCGAACTACACAATAGGCGCGAATTGGGGTCCTGCCCCCCCCCCCGGGGGTCGACCGGCATTCGATAAGCTTGATTAGTGAGCCGCAGGCCCAGCCCAACCGGATTGAACGTGTTCCCACCTGTCCCGGGAAGAGGAGCAACCGAAGCACGTGCGTCACAGTGAGCTAAGACTTCGGCCCATGGCCTTCGTGCACTCCTTCTTCACGGCGATGGTGTTTCTCACCGTTGCGTTCAGTGATGTCGGCCTGCACAACTACTTCTTCGGGCAGAATCCTGGCGGCAACAGCAAGGAGCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTACCGACCAAGAGGAAGGGCATTGGATACAACGTCAATACACCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCTAGGCCACACGTACATGTCTCTCAAAAAAATTCTTGTTAGAATATATATATAATGTAATTAGCAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCTTGTCTTAATTAATTAGTTTCTTCTATACGCAAAAGCTAACCTGGAATTGTTATTAATAGTTGGGCCTATCGATTATATTGATATAAAAAAAAAGAAAAA]

[-] EMBL CA760105             [CCCAAGATCCGGGTCGTTGGTATAACCCACCTCCCATGTGAGGCGGCCCGTATTTCGAACTACACAATAGGCGCGAATTGGGGTCCTGCCCCCCCCCCCGGGGGTCGACCGGCATTCGATAAGCTTGATTAGTGAGCCGCAGGCCCAGCCCAACCGGATTGAACGTGTTCCCACCTGTCCCGGGAAGAGGAGCAACCGAAGCACGTGCGTCACAGTGAGCTAAGACTTCGGCCCATGGCCTTCGTGCACTCCTTCTTCACGGCGATGGTGTTTCTCACCGTTGCGTTCAGTGATGTCGGCCTGCACAACTACTTCTTCGGGCAGAATCCTGGCGGCAACAGCAAGGAGCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTACCGACCAAGAGGAAGGGCATTGGATACAACGTCAATACACCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCTAGGCCACACGTACATGTCTCTCAAAAAAATTCTTGTTAGAATATATATATAATGTAATTAGCAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCTTGTCTTAATTAATTAGTTTCTTCTATACGCAAAAGCTAACCTGGAATTGTTATTAATAGTTGGGCCTATCGATTATATTGATATAAAAAAAAAGAAAAA]


>consensus_10092#1 CCCAAGATCCGGGTCGTTGGTATAACCCACCTCCCATGTGAGGCGGCCCGTATTTCGAAC TACACAATAGGCGCGAATTGGGGTCCTGCCCCCCCCCCCGGGGGTCGACCGGCATTCGAT AAGCTTGATTAGTGAGCCGCAGGCCCAGCCCAACCGGATTGAACGTGTTCCCACCTGTCC CGGGAAGAGGAGCAACCGAAGCACGTGCGTCACAGTGAGCTAAGACTTCGGCCCATGGCC TTCGTGCACTCCTTCTTCACGGCGATGGTGTTTCTCACCGTTGCGTTCAGTGATGTCGGC CTGCACAACTACTTCTTCGGGCAGAATCCTGGCGGCAACAGCAAGGAGCTCCTCAAGAAC CTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTACCGACCAAGAGG AAGGGCATTGGATACAACGTCAATACACCCAACCGCAAGGCCGAGGATGTAACTAAAAAT TAAATTAAAGCTCTTATATACGTAGCTAGGCCACACGTACATGTCTCTCAAAAAAATTCT TGTTAGAATATATATATAATGTAATTAGCAAGTATTTGATTGGAGATCAGTTAATTAAAT TATGTCTTGTCTTAATTAATTAGTTTCTTCTATACGCAAAAGCTAACCTGGAATTGTTAT TAATAGTTGGGCCTATCGATTATATTGATATAAAAAAAAAGAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10092#0      GACACTGACATGGATTGAAGGAGTAGAAAATATCTCTCTTCAGTCTTCACCAGTTGATTA 60
consensus_10092#1      ------------------------------------------------------------
                                                                                   

consensus_10092#0      ATTACTACGACGCCGCATCAAAAGCTCCAGCAATGGCGGCATCTCCTCCGGGCGCCATCG 120
consensus_10092#1      ------------------------------------------------------------
                                                                                   

consensus_10092#0      TGATCAACATGGCATCGAACACCAACGGCGAGTCCACGGCGGTGACGACCAATAACTTAG 180
consensus_10092#1      ------------------------------------------------------------
                                                                                   

consensus_10092#0      CTCCGTCGACGCCTAAGGCCGTCGATGAGTCCACGACGTCGTCGAAAACAGATGTGGCCA 240
consensus_10092#1      ------------------------------------------------------------
                                                                                   

consensus_10092#0      CGAAGACGGTGACCGACAAGGTGATGGCAAGCACGGCGAACCTGGCGCAGCTGCTGCCGA 300
consensus_10092#1      ------------------------------------------------------------
                                                                                   

consensus_10092#0      CGGGGACGGTGCTGGCTTACCAGGCGCTGTCGCCGTCCTTCACCAACCACGGCGAGTGCA 360
consensus_10092#1      -----------CCCAAGATCCGGGT--CGTTGGTATAACCCACCTCCCATG-TGAG-GCG 45
                                  *       ** **    ** *   *    ****  *** *  *** ** 

consensus_10092#0      ACGCCGCCAACAAGTGGCTCACCGCCGTGCTGGTCGGCGTCCTGGCCGGCCTCTCCCTCT 420
consensus_10092#1      GCCCGTATTTCGAACTACACAATAG-GCGCGAATTGGGGTCCTGCCCCCCCCCCCGGGGG 104
                        * *      * *    * **     * **   * ** ****** **  ** * *     

consensus_10092#0      TCTTCTCCTTCACGGACAGCGTCGTCGGCCAAGACGGCAAGCTCTACTACGGCGTGGCGA 480
consensus_10092#1      TCGACCGGCATTCGATAAGCTTGATTAGTGA--GCCGCAGGCCCAGCC---------CAA 153
                       **  *       **   *** *  *  *  *   * *** ** *  *          * *

consensus_10092#0      CACGGCGGGGATTGAACGTGTTCA-ACATGTCCCGGGAAGAGGAGGAAGCGAAGAAATTG 539
consensus_10092#1      C------CGGATTGAACGTGTTCCCACCTGTCCCGGGAAGAGGAGCAACCGAAGCACGTG 207
                       *       ***************  ** ***************** ** ***** *  **

consensus_10092#0      AGTCACAGTGAGCTAAGACTACGGCCGCTGGACTTCGTGCACTCCTTCTTCACGGCGATG 599
consensus_10092#1      CGTCACAGTGAGCTAAGACTTCGGCCCATGGCCTTCGTGCACTCCTTCTTCACGGCGATG 267
                        ******************* *****  *** ****************************

consensus_10092#0      GTGTTCCTCACCGTTGCGTTCAGTGATGTCGGGCTGCAGAACTGCTTCTTCGGGCAGAAT 659
consensus_10092#1      GTGTTTCTCACCGTTGCGTTCAGTGATGTCGGCCTGCACAACTACTTCTTCGGGCAGAAT 327
                       ***** ************************** ***** **** ****************

consensus_10092#0      CCTGGCGGCAACACCAAGGAGCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCG 719
consensus_10092#1      CCTGGCGGCAACAGCAAGGAGCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCG 387
                       ************* **********************************************

consensus_10092#0      AGCTTCGTCTTCTTGATCTTCCCGACCAAGAGGAAGGGCATCGGATACAACGACAATACA 779
consensus_10092#1      AGCTTCGTCTTCTTGATCTTACCGACCAAGAGGAAGGGCATTGGATACAACGTCAATACA 447
                       ******************** ******************** ********** *******

consensus_10092#0      CCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCT 839
consensus_10092#1      CCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCT 507
                       ************************************************************

consensus_10092#0      AGGTCACACGTACATGTCTCTCAAAAAT-TTCTTGTTAGAATATATATATAATGTAATTA 898
consensus_10092#1      AGGCCACACGTACATGTCTCTCAAAAAAATTCTTGTTAGAATATATATATAATGTAATTA 567
                       *** ***********************  *******************************

consensus_10092#0      ACAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCTTGTATTAATTAATTAGTTTC 958
consensus_10092#1      GCAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCTTGTCTTAATTAATTAGTTTC 627
                        ****************************************** ****************

consensus_10092#0      TTCTATACGCAAAAGCTAAACTGGAATTGTTATTAATAGTTGGGCTTATCGATTA----- 1013
consensus_10092#1      TTCTATACGCAAAAGCTAACCTGGAATTGTTATTAATAGTTGGGCCTATCGATTATATTG 687
                       ******************* ************************* *********     

consensus_10092#0      ----AAAAAAAAA------ 1022
consensus_10092#1      ATATAAAAAAAAAGAAAAA 706
                           *********      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)