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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10092#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1022 fasta sequence
[GACACTGACATGGATTGAAGGAGTAGAAAATATCTCTCTTCAGTCTTCACCAGTTGATTAATTACTACGACGCCGCATCAAAAGCTCCAGCAATGGCGGCATCTCCTCCGGGCGCCATCGTGATCAACATGGCATCGAACACCAACGGCGAGTCCACGGCGGTGACGACCAATAACTTAGCTCCGTCGACGCCTAAGGCCGTCGATGAGTCCACGACGTCGTCGAAAACAGATGTGGCCACGAAGACGGTGACCGACAAGGTGATGGCAAGCACGGCGAACCTGGCGCAGCTGCTGCCGACGGGGACGGTGCTGGCTTACCAGGCGCTGTCGCCGTCCTTCACCAACCACGGCGAGTGCAACGCCGCCAACAAGTGGCTCACCGCCGTGCTGGTCGGCGTCCTGGCCGGCCTCTCCCTCTTCTTCTCCTTCACGGACAGCGTCGTCGGCCAAGACGGCAAGCTCTACTACGGCGTGGCGACACGGCGGGGATTGAACGTGTTCAACATGTCCCGGGAAGAGGAGGAAGCGAAGAAATTGAGTCACAGTGAGCTAAGACTACGGCCGCTGGACTTCGTGCACTCCTTCTTCACGGCGATGGTGTTCCTCACCGTTGCGTTCAGTGATGTCGGGCTGCAGAACTGCTTCTTCGGGCAGAATCCTGG-CGGCAACACCAAGGA-GCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTCCCGACCAAGAGGAAGGGCATCGGATACAACGACAATA-CACCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCTAGGTCACACGTACATGTCTCTCAAAAATTTCTTGTTAGAATATATATATAATGTAATTAACAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCTTGTATTAATTAATTAGTTTCTTCTATACGCAAAAGCTAAACTGGAATTGTTATTAATAGTTGGGCTTATCGATTAAAAAAAAAA]
[+] EMBL CF309004 [GACACTGACATGGATTGAAGGAGTAGAAAATATCTCTCTTCAGTCTTCACCAGTTGATTAATTACTACGACGCCGCATCAAAAGCTCCAGCAATGGCGGCATCTCCTCCGGGCGCCATCGTGATCAACATGGCATCGAACACCAACGGCGAGTCCACGGCGGTGACGACCAATAACTTAGCTCCGTCGACGCCTAAGGCCGTCGATGAGTCCACGACGTCGTCGAAAACAGATGTGGCCACGAAGACGGTGACCGACAAGGTGATGGCAAGCACGGCGAACCTGGCGCAGCTGCTGCCGACGGGGACGGTGCTGGCTTA CAGGCGCTGTCGCCGTCCTTCACCAACCACGGCGAGTGCAACGCCGCCAACAAGTGGCTCACCGCCGTGCTGGTCGGCGTCCTGGCCGGCCTCTCCCTCTTCTTCTCCTTCACGGACAGCGTCGTCGGCCAAGACGGCAAGCTCTACTACGGCGTGGCGACACGGCGGGGATTGAACGTGTTCAACATGTCCCGGGAAGAGGAGGAAGCGAAGAAATTGAGTCACAGTGAGCTAAGACTACGGCCGCTGGACTTCGTGCACTCCTTCTTCACGGCGATGGTGTTCCTCACCGTTGCGTTCAGTGATGTCGGGCTGCAGAACTGCTTCTTCGGGCAGAATCCTG ]
[+] EMBL AK108444 [ TCTTCAGTCTTCACCAGTTGATTAATTACTACGACGCCGCATCAAAAGCTCCAGCAATGGCGGCATCTCCTCCGGGCGCCATCGTGATCAACATGGCATCGAACACCAACGGCGAGTCCACGGCGGTGACGACCAATAACTTAGCTCCGTCGACGCCTAAGGCCGTCGATGAGTCCACGACGTCGTCGAAAACAGATGTGGCCACGAAGACGGTGACCGACAAGGTGATGGCAAGCACGGCGAACCTGGCGCAGCTGCTGCCGACGGGGACGGTGCTGGCTTACCAGGCGCTGTCGCCGTCCTTCACCAACCACGGCGAGTGCAACGCCGCCAACAAGTGGCTCACCGCCGTGCTGGTCGGCGTCCTGGCCGGCCTCTCCCTCTTCTTCTCCTTCACGGACAGCGTCGTCGGCCAAGACGGCAAGCTCTACTACGGCGTGGCGACACGGCGGGGATTGAACGTGTTCAACATGTCCCGGGAAGAGGAGGAAGCGAAGAAATTGAGTCACAGTGAGCTAAGACTACGGCCGCTGGACTTCGTGCACTCCTTCTTCACGGCGATGGTGTTCCTCACCGTTGCGTTCAGTGATGTCGGGCTGCAGAACTGCTTCTTCGGGCAGAATCCTGG CGGCAACACCAAGGA GCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTCCCGACCAAGAGGAAGGGCATCGGATACAACGACAATA CACCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCTAGGTCACACGTACATGTCTCTCAAAAATTTCTTGTTAGAATATATATATAATGTAATTAACAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCT ]
[+] EMBL BE228964 [ gagcaCAATGGCGGCATCTCCTCCGGGCGCCATCGTGATCAACATGGCATCGAACACCAACGGCGAGTCCACGGCGGTGACGACCAATAACTTAGCTCCGTCGACGCCTAAGGCCGCCGATGAGTCCACGACGTCGTCGAGAACAGATGTGGCCACGAAGACGGT ACCGACAAGGTGATGGCAAGCACGGCGAACCTGGCGCANCTGCTGCCGACGGGGACGGTGCTGGCTTACCAAGCGCTGTCGCCGTCCTTCACCAACCACGGCGAGTGCAACGCCGCCAACAAGTGGCTCACCGCCGTGCTGGTCGGCGTCCTGGCCGGCCTCTCCCTCTTCTTCTCCTTCACGGACAGCGTCGTCGGCCAAGAC GCAAGCTCTNCTACGGCGTGGCGACACGGCGGGGATTGAACGTGTTCAACATGT CCGGGAAGAAGAAGAA CNAAGAAATTGAATC CAGTGAGCTAAGACTACNGCCGCTGGACTTCNTGCACTCCTTCTTCNCGGCGANAGTGTTCCTCACCGTTGC TTCAATGATGTCNGGCTGCA AAATGCTTCTTCCGGCAGAATCCTGGCCGGCAANAC ]
[+] EMBL CA764383 [ CACGGCGAACCTGGCGCAGCTGCTGCCGACGGGGACGGTGCTGGCTTACCAGGCGCTGTCGCCGTCCTTCACCAACCACGGCGAGTGCAACGCCGCCAACAAGTGGCTCACCGCCGTGCTGGTCGGCGTCCTGGCCGGCCTCTCCCTCTTCTTCTCCTTCACGGACAGCGTCGTCGGCCAAGACGGCAAGCTCTACTACGGCGTGGCGACACGGCGGGGATTGAACGTGTTCAACATGTCCCGGGAAGAGGAGGAAGCGAAGAAATTGAGTCACAGTGAGCTAAGACTACGGCCGCTGGACTTCGTGCACTCCTTCTTCACGGCGATGGTGTTCCTCACCGTTGCGTTCAGTGATGTCGGGCTGCAGAACTGCTTCTTCGGGCAGAATCCTGG CGGCAACACCAAGGA GCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTCCCGACCAAGAGGAAGGGCATCGGATACAACGACAATA CACCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCTAGGTCACACGTACATGTCTCTCAAAAAATTCTTGGTAGA ATATATATAATGTAATTAACAAGTATTTGATTGGAGATCAGNTAATTAAANTATGNCTTGga ]
[-] EMBL CF309005 [ CGTCGTCGGCCAAGACGGCAAGCTCTACTACGGCGTGGCGACACGGCGGGGATTGAACGTGTTCAACATGTCCCGGGAAGAGGAGGAAGCGAAGAAATTGAGTCACAGTGAGCTAAGACTACGGCCGCTGGACTTCGTGCACTCCTTCTTCACGGCGATGGTGTTCCTCACCGTTGCGTTCAGTGATGTCGGGCTGCAGAACTGCTTCTTCGGGCAGAATCCTGG CGGCAACACCAAGGA GCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTCCCGACCAAGAGGAAGGGCATCGGATACAACGACAATA CACCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCTAGGTCACACGTACATGTCTCTCAAAAATTTCTTGTTAGAATATATATATAATGTAATTAACAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCTTGTATTAATTAATTAGTTTCTTCTATACGCAAAAGCTAAACTGGAATTGTTATTAATAGTTGGGCTTATCGATTAAAAAAAAAA]
[-] EMBL CF297723 [ GGTGTTCCTCACCGTTGCGTTCAGTGATGTCGGGCTGCAGAACTGCTTCTTCGGGCAGAATCCTGG CGGCAACACCAAGGANGCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTCCCGACCAAGAGGAAGGGCATCGGATACAACGACAATANCACCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCTAGGTCACACGTACATGTCTCTCAAAAATTTCTTGTTAGAATATATATATAATGTAATTAACAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCCTGTATTAATTAAaaaaa ]
consensusID : consensus_10092#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence
[CCCAAGATCCGGGTCGTTGGTATAACCCACCTCCCATGTGAGGCGGCCCGTATTTCGAACTACACAATAGGCGCGAATTGGGGTCCTGCCCCCCCCCCCGGGGGTCGACCGGCATTCGATAAGCTTGATTAGTGAGCCGCAGGCCCAGCCCAACCGGATTGAACGTGTTCCCACCTGTCCCGGGAAGAGGAGCAACCGAAGCACGTGCGTCACAGTGAGCTAAGACTTCGGCCCATGGCCTTCGTGCACTCCTTCTTCACGGCGATGGTGTTTCTCACCGTTGCGTTCAGTGATGTCGGCCTGCACAACTACTTCTTCGGGCAGAATCCTGGCGGCAACAGCAAGGAGCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTACCGACCAAGAGGAAGGGCATTGGATACAACGTCAATACACCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCTAGGCCACACGTACATGTCTCTCAAAAAAATTCTTGTTAGAATATATATATAATGTAATTAGCAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCTTGTCTTAATTAATTAGTTTCTTCTATACGCAAAAGCTAACCTGGAATTGTTATTAATAGTTGGGCCTATCGATTATATTGATATAAAAAAAAAGAAAAA]
[-] EMBL CA760105 [CCCAAGATCCGGGTCGTTGGTATAACCCACCTCCCATGTGAGGCGGCCCGTATTTCGAACTACACAATAGGCGCGAATTGGGGTCCTGCCCCCCCCCCCGGGGGTCGACCGGCATTCGATAAGCTTGATTAGTGAGCCGCAGGCCCAGCCCAACCGGATTGAACGTGTTCCCACCTGTCCCGGGAAGAGGAGCAACCGAAGCACGTGCGTCACAGTGAGCTAAGACTTCGGCCCATGGCCTTCGTGCACTCCTTCTTCACGGCGATGGTGTTTCTCACCGTTGCGTTCAGTGATGTCGGCCTGCACAACTACTTCTTCGGGCAGAATCCTGGCGGCAACAGCAAGGAGCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTACCGACCAAGAGGAAGGGCATTGGATACAACGTCAATACACCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCTAGGCCACACGTACATGTCTCTCAAAAAAATTCTTGTTAGAATATATATATAATGTAATTAGCAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCTTGTCTTAATTAATTAGTTTCTTCTATACGCAAAAGCTAACCTGGAATTGTTATTAATAGTTGGGCCTATCGATTATATTGATATAAAAAAAAAGAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10092#0 GACACTGACATGGATTGAAGGAGTAGAAAATATCTCTCTTCAGTCTTCACCAGTTGATTA 60
consensus_10092#1 ------------------------------------------------------------
consensus_10092#0 ATTACTACGACGCCGCATCAAAAGCTCCAGCAATGGCGGCATCTCCTCCGGGCGCCATCG 120
consensus_10092#1 ------------------------------------------------------------
consensus_10092#0 TGATCAACATGGCATCGAACACCAACGGCGAGTCCACGGCGGTGACGACCAATAACTTAG 180
consensus_10092#1 ------------------------------------------------------------
consensus_10092#0 CTCCGTCGACGCCTAAGGCCGTCGATGAGTCCACGACGTCGTCGAAAACAGATGTGGCCA 240
consensus_10092#1 ------------------------------------------------------------
consensus_10092#0 CGAAGACGGTGACCGACAAGGTGATGGCAAGCACGGCGAACCTGGCGCAGCTGCTGCCGA 300
consensus_10092#1 ------------------------------------------------------------
consensus_10092#0 CGGGGACGGTGCTGGCTTACCAGGCGCTGTCGCCGTCCTTCACCAACCACGGCGAGTGCA 360
consensus_10092#1 -----------CCCAAGATCCGGGT--CGTTGGTATAACCCACCTCCCATG-TGAG-GCG 45
* ** ** ** * * **** *** * *** **
consensus_10092#0 ACGCCGCCAACAAGTGGCTCACCGCCGTGCTGGTCGGCGTCCTGGCCGGCCTCTCCCTCT 420
consensus_10092#1 GCCCGTATTTCGAACTACACAATAG-GCGCGAATTGGGGTCCTGCCCCCCCCCCCGGGGG 104
* * * * * ** * ** * ** ****** ** ** * *
consensus_10092#0 TCTTCTCCTTCACGGACAGCGTCGTCGGCCAAGACGGCAAGCTCTACTACGGCGTGGCGA 480
consensus_10092#1 TCGACCGGCATTCGATAAGCTTGATTAGTGA--GCCGCAGGCCCAGCC---------CAA 153
** * ** *** * * * * * *** ** * * * *
consensus_10092#0 CACGGCGGGGATTGAACGTGTTCA-ACATGTCCCGGGAAGAGGAGGAAGCGAAGAAATTG 539
consensus_10092#1 C------CGGATTGAACGTGTTCCCACCTGTCCCGGGAAGAGGAGCAACCGAAGCACGTG 207
* *************** ** ***************** ** ***** * **
consensus_10092#0 AGTCACAGTGAGCTAAGACTACGGCCGCTGGACTTCGTGCACTCCTTCTTCACGGCGATG 599
consensus_10092#1 CGTCACAGTGAGCTAAGACTTCGGCCCATGGCCTTCGTGCACTCCTTCTTCACGGCGATG 267
******************* ***** *** ****************************
consensus_10092#0 GTGTTCCTCACCGTTGCGTTCAGTGATGTCGGGCTGCAGAACTGCTTCTTCGGGCAGAAT 659
consensus_10092#1 GTGTTTCTCACCGTTGCGTTCAGTGATGTCGGCCTGCACAACTACTTCTTCGGGCAGAAT 327
***** ************************** ***** **** ****************
consensus_10092#0 CCTGGCGGCAACACCAAGGAGCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCG 719
consensus_10092#1 CCTGGCGGCAACAGCAAGGAGCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCG 387
************* **********************************************
consensus_10092#0 AGCTTCGTCTTCTTGATCTTCCCGACCAAGAGGAAGGGCATCGGATACAACGACAATACA 779
consensus_10092#1 AGCTTCGTCTTCTTGATCTTACCGACCAAGAGGAAGGGCATTGGATACAACGTCAATACA 447
******************** ******************** ********** *******
consensus_10092#0 CCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCT 839
consensus_10092#1 CCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAATTAAAGCTCTTATATACGTAGCT 507
************************************************************
consensus_10092#0 AGGTCACACGTACATGTCTCTCAAAAAT-TTCTTGTTAGAATATATATATAATGTAATTA 898
consensus_10092#1 AGGCCACACGTACATGTCTCTCAAAAAAATTCTTGTTAGAATATATATATAATGTAATTA 567
*** *********************** *******************************
consensus_10092#0 ACAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCTTGTATTAATTAATTAGTTTC 958
consensus_10092#1 GCAAGTATTTGATTGGAGATCAGTTAATTAAATTATGTCTTGTCTTAATTAATTAGTTTC 627
****************************************** ****************
consensus_10092#0 TTCTATACGCAAAAGCTAAACTGGAATTGTTATTAATAGTTGGGCTTATCGATTA----- 1013
consensus_10092#1 TTCTATACGCAAAAGCTAACCTGGAATTGTTATTAATAGTTGGGCCTATCGATTATATTG 687
******************* ************************* *********
consensus_10092#0 ----AAAAAAAAA------ 1022
consensus_10092#1 ATATAAAAAAAAAGAAAAA 706
*********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||