These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10107#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1608 fasta sequence [GGCGCCGCCGCCGCCGCCGCCGTGCTCCGTGCGCGCCGCGGGCTCCAATCCAATTGGCTGCCTCGAGGTAGCAGAGCCGTGGAGCGGCGCCGCGCCGCCCCCGCTGCCGCCGCTGCCGGGCCATCTGCATGTCGCGGCGCCGGCGGCGGAGGACGACGACGACGCGCTCGCCGCCGCCGCCGCCGCCGTGCCGTCCGAGCAGAGGGTGCACGACGTCGTTCTGAAGCAAGCGGCGCTCGCCGCGGCAGCGCCCGAGATGCGGAGGCCGGCGCAGTTGGCCGAGAGGGAGCGCGTCGCCGGCGGCCTGAACGCCGCCTTCGATCGCTGCGGCGAGGTCTGCAAGGAGTACGCCAAGACATTCTACCTCGCGACGCAGCTGATGACGCCGGAGAGGAGGAGGGCAATCTGGGCGATATACGTGTGGTGCAGGCGAACGGACGAGCTGGTGGATGGGCCCAACGCGTCGCACATGTCGGCGCTGGCTCTCGACCGGTGGGAGTCGCGGCTGGACGACATCTTCGCCGGCCGCCCCTACGACATGCTCGACGCCGCCCTCTCCCACACCGTCGCCACCTTCCCCGTCGACATCCAGCCGTTCAGGGACATGATCGAGGGGATGCGATTGGACCTAACGAAGTCGAGGTACAGGAGCTTCGACGAGCTCTACCTCTACTGCTACTACGTCGCCGGAACGGTCGGGCTCATGACGGTGCCGGTCATGGGCATCTCGCCGGACTCGAGGGCCAACACCGAGACCGTCTACAAGGGGGCACTGGCTCTCGGCCTCGCCAACCAGCTCACCAACATTCTCAGGGACGTCGGCGAGGATGCAAGAAGAGGCAGGATCTATCTCCCAATGGACGAGCTCGAGATGGCCGGACTCTCTGAAGATGACATCTTCGACGGCCGCGTCACGGACAGATGGAGATGTTTTATGAGGGATCAGATCACGAGAGCGAGGGCGTTTTTCAGACAGGCCGAAGAAGGCGCCAGCGAGCTCAATCAGGAG-AGCCGATGGCCGGTTTGGGCTTCTCTACTTCTGTACCGACAAATCCTTGACGAGATCGAGGCCAACGATTACAACAACTTCACCAAGAGGGCCTACGTCCCAAAGGCAAAGAAGATTGTGGCTCTGCCTAAAGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACATCATCATGATCAGCTTGTGGTATTGTTGTTACAATTTATCTTGTATTCAAGTCTTGCAATGTACAAAGTATTGCAGTATCTGCAAATATATGTACACTTTAACATTGTGTATATATAGGGAAGTTTCTATGAAACAGAGTAGTGTATATATGACCATATTTCATAGGTCATACTACTCTTGCATAATGCTGTCAGCTTATCACTCATTGCTTCAGTCAATCAGCTAGGTTGTGAAAGTACCTAACTATCTATATGAAATATTAGTCTTATCAGCATGGGTGTAAGATGGGTATGTACCCCCACAAAGATTTCCAATCTATTAGTCAAAAACAGCAACGTTTTTTTTTATAAAACATTGGTGTACAGGTGTCACCTTTTATGAAGGATCATTAGCATGAGCTCAGCAAAAA] [+] EMBL AK108154 [GGCGCCGCCGCCGCCGCCGCCGTGCTCCGTGCGCGCCGCGGGCTCCAATCCAATTGGCTGCCTCGAGGTAGCAGAGCCGTGGAGCGGCGCCGCGCCGCCCCCGCTGCCGCCGCTGCCGGGCCATCTGCATGTCGCGGCGCCGGCGGCGGAGGACGACGACGACGCGCTCGCCGCCGCCGCCGCCGCCGTGCCGTCCGAGCAGAGGGTGCACGACGTCGTTCTGAAGCAAGCGGCGCTCGCCGCGGCAGCGCCCGAGATGCGGAGGCCGGCGCAGTTGGCCGAGAGGGAGCGCGTCGCCGGCGGCCTGAACGCCGCCTTCGATCGCTGCGGCGAGGTCTGCAAGGAGTACGCCAAGACATTCTACCTCGCGACGCAGCTGATGACGCCGGAGAGGAGGAGGGCAATCTGGGCGATATACGTGTGGTGCAGGCGAACGGACGAGCTGGTGGATGGGCCCAACGCGTCGCACATGTCGGCGCTGGCTCTCGACCGGTGGGAGTCGCGGCTGGACGACATCTTCGCCGGCCGCCCCTACGACATGCTCGACGCCGCCCTCTCCCACACCGTCGCCACCTTCCCCGTCGACATCCAGCCGTTCAGGGACATGATCGAGGGGATGCGATTGGACCTAACGAAGTCGAGGTACAGGAGCTTCGACGAGCTCTACCTCTACTGCTACTACGTCGCCGGAACGGTCGGGCTCATGACGGTGCCGGTCATGGGCATCTCGCCGGACTCGAGGGCCAACACCGAGACCGTCTACAAGGGGGCACTGGCTCTCGGCCTCGCCAACCAGCTCACCAACATTCTCAGGGACGTCGGCGAGGATGCAAGAAGAGGCAGGATCTATCTCCCAATGGACGAGCTCGAGATGGCCGGACTCTCTGAAGATGACATCTTCGACGGCCGCGTCACGGACAGATGGAGATGTTTTATGAGGGATCAGATCACGAGAGCGAGGGCGTTTTTCAGACAGGCCGAAGAAGGCGCCAGCGAGCTCAATCAGGAG AGCCGATGGCCGGTTTGGGCTTCTCTACTTCTGTACCGACAAATCCTTGACGAGATCGAGGCCAACGATTACAACAACTTCACCAAGAGGGCCTACGTCCCAAAGGCAAAGAAGATTGTGGCTCTGCCTAAAGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACATCATCATGATCAGCTTGTGGTATTGTTGTTACAATTTATCTTGTATTCAAGTCTTGCAATGTACAAAGTATTGCAGTATCTGCAAATATATGTACACTTTAACATTGTGTATATATAGGGAAGTTTCTATGAAACAGAGTAGTGTATATATGACCATATTTCATAGGTCATACTACTCTTGCATAATGCTGTCAGCTTATCACTCATTGCTTCAGTCAATCAGCTAGGTTGTGAAAGTACCTAACTATCTATATGAAATATTAGTCTT ] [+] EMBL AY078162 [ cgatCATGATCGAGGGGATGCGATTGGACCTAACGAAGTCGAGGTACAGGAGCTTCGACGAGGTCTACCTCTACTGCTACTACGTCGCCGGAACGGTCGGGCTCATGACGGTGCCGGTCATGGGCATCTCGCCGGACTCGAGGGCCAACACCGAGACCGTCTACAAGGGGGCACTGGCTCTCGGCCTCGCCAACCAGCTCACCAACATTCTCAGGGACGTCGGCGAGGATGCAAGAAGAGGCAGGATCTATCTCCCAATGGACGAGCTCGAGATGGCCGGACTCTCTGAAGATGACATCTTCGACGGCCGCGTCACGGACAGATGGAGATGTTTTATGAGGGATCAGATCACGAGAGCGAGGGCGTTTTTCAGACAGGCCGAAGAAGGCGCCAGCGAGCTCAATAAGGAG AGCCGATGGCCGGTTTGGGCTTCTCTACTTCTGTACCGACAAATCCTTGACGAGATCGAGGCCAACGGTTACAACAACTTCACCAAGAGGGCCTACGTCCCAAAGGCAAAGAAGATTGTGGCTCTGCCTAAAGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACATCATCATGATC ] [+] EMBL CF312553 [ TACAGGAGCTTCGACGAGCTCTACCTCTACTGCTACTACGTCGCCGGAACGGTCGGGCTCATGACGGTGCCGGTCATGGGCATCTCGCCGGACTCGAGGGCCAACACCGAGACCGTCTACAAGGGGGCACTGGCTCTCGGCCTCGCCAACCAGCTCACCAACATTCTCAGGGACGTCGGCGAGGATGCAAGAAGAGGCAGGATCTATCTCCCAATGGACGAGCTCGAGATGGCCGGACTCTCTGAAGATGACATCTTCGACGGCCGCGTCACGGACAGAGGGAGATGTTTTATGAGGGATCAGATCACGAGAGCGAGGGCGTTTTTCAGACAGGCCGAAGAAGGCGCCAGCGAGCTCAATCAGGAGAAGCCGATGGCCGGTTTGGGCTTCTCTACTTCTGTACCGACAAATCCTTGACGAGATCGAGGCCAACGATTACAACAACTTCACCAAGAGGGCCTACGTCCCAAAGGCAAAGAAGATTGTGGCTCTGCCTAAAGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACATCAT ] [+] EMBL AU165065 [ aAGCTTATCGCTCATTGCTTCAGTCAATCAGCTAGGTTGTGAAAGTACCTAACTATCTATATGAAATATTAGTCTTATCAGCATGGGTGTAAGATGGGTATGTACCCCCACAAAGATTTCCAATCTATTAGTCAAAAACAGCAACGTTTTTTTTTATAAAACATTGGTGTACAGGTGTCACCTTTTATGAAGGATCATTAGCATGAGCTCAGCAAAAA] consensusID : consensus_10107#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [CACGGACAGATGGAGATGTTTTATGAGGGATCAGATCACGAGAGCGAGGGCGTTTTTCAGACAGGCCGAAGAAGGCGCCAGCGAGCTCAATCAGGAGAGCCGATGGCCGGTTTGGGCTTCTCTACTTCTGTACCGACAAATCCTTGACGAGATCGAGGCCAACGATTACAACAACTTCACCANAGAGGGCCTACGTCCCAAAGGCAAAGAAGATTGTGGCTCTGCCTAAAGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACATCATCATGATCAGCTTGTGGTATTGTTGTTACAATTTATCTTGTATTCAAGTCTTGCAATGTACAAAGTATTGCAGTATCTGCAAATATATGTACACTTTAACATTGTGTATATATAGGGAAGTTTCTATGAAACAGAGTAGTGTATATATGCCCATAAAAAAAAAACAAAAAA] [-] EMBL CF312554 [CACGGACAGATGGAGATGTTTTATGAGGGATCAGATCACGAGAGCGAGGGCGTTTTTCAGACAGGCCGAAGAAGGCGCCAGCGAGCTCAATCAGGAGAGCCGATGGCCGGTTTGGGCTTCTCTACTTCTGTACCGACAAATCCTTGACGAGATCGAGGCCAACGATTACAACAACTTCACCANAGAGGGCCTACGTCCCAAAGGCAAAGAAGATTGTGGCTCTGCCTAAAGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACATCATCATGATCAGCTTGTGGTATTGTTGTTACAATTTATCTTGTATTCAAGTCTTGCAATGTACAAAGTATTGCAGTATCTGCAAATATATGTACACTTTAACATTGTGTATATATAGGGAAGTTTCTATGAAACAGAGTAGTGTATATATGCCCATAAAAAAAAAACAAAAAA] consensusID : consensus_10107#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 406 fasta sequence [GAGCTCAATCAGGAGAGCCGATGGCCGGTTTGGGCTTCTCTACTTCTGTACCGACAAATCCTTGACGAGATCGAGGCCAACGATTACAACAACTTCACCAAGAGGGCCTACGTCCCAAAGGCAAAGAAGATTGTGGCTCTGCCTAAAGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACATCATCATGATCAGCTTGTGGTATTGTTGTTACAATTTATCTTGTATTCAAGTCTTGCAATGTACAAAGTATTGCAGTATCTGCAAATATATGTACACTTTAACATTGTGTATATATA-GGGAAGTTTCTATGAAACAGAGTAGTGTATATATGACCATATTTCATAGGTCATACTACTCTTGCATAAAAAAAAAAAAAAAAAA] [-] EMBL CF305089 [GAGCTCAATCAGGAGAGCCGATGGCCGGTTTGGGCTTCTCTACTTCTGTACCGACAAATCCTTGACGAGATCGAGGCCAACGATTACAACAACTTCACCAAGAGGGCCTACGTCCCAAAGGCAAAGAAGATTGTGGCTCTGCCTAAAGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACATCATCATGATCAGCTTGTGGTATTGTTGTTACAATTTATCTTGTATTCAAGTCTTGCAATGTACAAAGTATTGCAGTATCTGCAAATATATGTACACTTTAACATTGTGTATATATA GGGAAGTTTCTATGAAACAGAGTAGTGTATATATGACCATATTTCATAGGTCATACTACTCTTGCATAAAAAAAAAAAAAAAAAA] [+] EMBL CF307565 [ AGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACATCATCATGATCAGCTTGTGGTATTGTTGTTACAATTTATCTTGTATTCAAGTCTTGCAATGTACAAAGTATTGCAGTATCTGCAAATATATGTACACTTTAACATTGTGTATATATAGGGGAAGTTTCTATGAAACAGAGTAGTGTATATATGACCATATTTCATAGGTCATACTACTCTTGCATAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10107#0 GGCGCCGCCGCCGCCGCCGCCGTGCTCCGTGCGCGCCGCGGGCTCCAATCCAATTGGCTG 60 consensus_10107#2 ------------------------------------------------------------ consensus_10107#1 ------------------------------------------------------------ consensus_10107#0 CCTCGAGGTAGCAGAGCCGTGGAGCGGCGCCGCGCCGCCCCCGCTGCCGCCGCTGCCGGG 120 consensus_10107#2 ------------------------------------------------------------ consensus_10107#1 ------------------------------------------------------------ consensus_10107#0 CCATCTGCATGTCGCGGCGCCGGCGGCGGAGGACGACGACGACGCGCTCGCCGCCGCCGC 180 consensus_10107#2 ------------------------------------------------------------ consensus_10107#1 ------------------------------------------------------------ consensus_10107#0 CGCCGCCGTGCCGTCCGAGCAGAGGGTGCACGACGTCGTTCTGAAGCAAGCGGCGCTCGC 240 consensus_10107#2 ------------------------------------------------------------ consensus_10107#1 ------------------------------------------------------------ consensus_10107#0 CGCGGCAGCGCCCGAGATGCGGAGGCCGGCGCAGTTGGCCGAGAGGGAGCGCGTCGCCGG 300 consensus_10107#2 ------------------------------------------------------------ consensus_10107#1 ------------------------------------------------------------ consensus_10107#0 CGGCCTGAACGCCGCCTTCGATCGCTGCGGCGAGGTCTGCAAGGAGTACGCCAAGACATT 360 consensus_10107#2 ------------------------------------------------------------ consensus_10107#1 ------------------------------------------------------------ consensus_10107#0 CTACCTCGCGACGCAGCTGATGACGCCGGAGAGGAGGAGGGCAATCTGGGCGATATACGT 420 consensus_10107#2 ------------------------------------------------------------ consensus_10107#1 ------------------------------------------------------------ consensus_10107#0 GTGGTGCAGGCGAACGGACGAGCTGGTGGATGGGCCCAACGCGTCGCACATGTCGGCGCT 480 consensus_10107#2 ------------------------------------------------------------ consensus_10107#1 ------------------------------------------------------------ consensus_10107#0 GGCTCTCGACCGGTGGGAGTCGCGGCTGGACGACATCTTCGCCGGCCGCCCCTACGACAT 540 consensus_10107#2 ------------------------------------------------------------ consensus_10107#1 ------------------------------------------------------------ consensus_10107#0 GCTCGACGCCGCCCTCTCCCACACCGTCGCCACCTTCCCCGTCGACATCCAGCCGTTCAG 600 consensus_10107#2 ------------------------------------------------------------ consensus_10107#1 ------------------------------------------------------------ consensus_10107#0 GGACATGATCGAGGGGATGCGATTGGACCTAACGAAGTCGAGGTACAGGAGCTTCGACGA 660 consensus_10107#2 ------------------------------------------------------------ consensus_10107#1 ------------------------------------------------------------ consensus_10107#0 GCTCTACCTCTACTGCTACTACGTCGCCGGAACGGTCGGGCTCATGACGGTGCCGGTCAT 720 consensus_10107#2 ------------------------------------------------------------ consensus_10107#1 ------------------------------------------------------------ consensus_10107#0 GGGCATCTCGCCGGACTCGAGGGCCAACACCGAGACCGTCTACAAGGGGGCACTGGCTCT 780 consensus_10107#2 ------------------------------------------------------------ consensus_10107#1 ------------------------------------------------------------ consensus_10107#0 CGGCCTCGCCAACCAGCTCACCAACATTCTCAGGGACGTCGGCGAGGATGCAAGAAGAGG 840 consensus_10107#2 ------------------------------------------------------------ consensus_10107#1 ------------------------------------------------------------ consensus_10107#0 CAGGATCTATCTCCCAATGGACGAGCTCGAGATGGCCGGACTCTCTGAAGATGACATCTT 900 consensus_10107#2 ------------------------------------------------------------ consensus_10107#1 ------------------------------------------------------------ consensus_10107#0 CGACGGCCGCGTCACGGACAGATGGAGATGTTTTATGAGGGATCAGATCACGAGAGCGAG 960 consensus_10107#2 ------------------------------------------------------------ consensus_10107#1 ------------CACGGACAGATGGAGATGTTTTATGAGGGATCAGATCACGAGAGCGAG 48 consensus_10107#0 GGCGTTTTTCAGACAGGCCGAAGAAGGCGCCAGCGAGCTCAATCAGGAGAGCCGATGGCC 1020 consensus_10107#2 ----------------------------------GAGCTCAATCAGGAGAGCCGATGGCC 26 consensus_10107#1 GGCGTTTTTCAGACAGGCCGAAGAAGGCGCCAGCGAGCTCAATCAGGAGAGCCGATGGCC 108 ************************** consensus_10107#0 GGTTTGGGCTTCTCTACTTCTGTACCGACAAATCCTTGACGAGATCGAGGCCAACGATTA 1080 consensus_10107#2 GGTTTGGGCTTCTCTACTTCTGTACCGACAAATCCTTGACGAGATCGAGGCCAACGATTA 86 consensus_10107#1 GGTTTGGGCTTCTCTACTTCTGTACCGACAAATCCTTGACGAGATCGAGGCCAACGATTA 168 ************************************************************ consensus_10107#0 CAACAACTTCACCAA-GAGGGCCTACGTCCCAAAGGCAAAGAAGATTGTGGCTCTGCCTA 1139 consensus_10107#2 CAACAACTTCACCAA-GAGGGCCTACGTCCCAAAGGCAAAGAAGATTGTGGCTCTGCCTA 145 consensus_10107#1 CAACAACTTCACCANAGAGGGCCTACGTCCCAAAGGCAAAGAAGATTGTGGCTCTGCCTA 228 ************** ******************************************** consensus_10107#0 AAGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACAT 1199 consensus_10107#2 AAGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACAT 205 consensus_10107#1 AAGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACAT 288 ************************************************************ consensus_10107#0 CATCATGATCAGCTTGTGGTATTGTTGTTACAATTTATCTTGTATTCAAGTCTTGCAATG 1259 consensus_10107#2 CATCATGATCAGCTTGTGGTATTGTTGTTACAATTTATCTTGTATTCAAGTCTTGCAATG 265 consensus_10107#1 CATCATGATCAGCTTGTGGTATTGTTGTTACAATTTATCTTGTATTCAAGTCTTGCAATG 348 ************************************************************ consensus_10107#0 TACAAAGTATTGCAGTATCTGCAAATATATGTACACTTTAACATTGTGTATATATAGGGA 1319 consensus_10107#2 TACAAAGTATTGCAGTATCTGCAAATATATGTACACTTTAACATTGTGTATATATAGGGA 325 consensus_10107#1 TACAAAGTATTGCAGTATCTGCAAATATATGTACACTTTAACATTGTGTATATATAGGGA 408 ************************************************************ consensus_10107#0 AGTTTCTATGAAACAGAGTAGTGTATATATGACCATATTTCATAGGTCATACTACTCTTG 1379 consensus_10107#2 AGTTTCTATGAAACAGAGTAGTGTATATATGACCATATTTCATAGGTCATACTACTCTTG 385 consensus_10107#1 AGTTTCTATGAAACAGAGTAGTGTATATATGCCCATAAAAAAAAAACAAAAAA------- 461 ******************************* ***** * * * * consensus_10107#0 CATAATGCTGTCAGCTTATCACTCATTGCTTCAGTCAATCAGCTAGGTTGTGAAAGTACC 1439 consensus_10107#2 CATAAAAAAAAAAAAAAAAAA--------------------------------------- 406 consensus_10107#1 ------------------------------------------------------------ consensus_10107#0 TAACTATCTATATGAAATATTAGTCTTATCAGCATGGGTGTAAGATGGGTATGTACCCCC 1499 consensus_10107#2 ------------------------------------------------------------ consensus_10107#1 ------------------------------------------------------------ consensus_10107#0 ACAAAGATTTCCAATCTATTAGTCAAAAACAGCAACGTTTTTTTTTATAAAACATTGGTG 1559 consensus_10107#2 ------------------------------------------------------------ consensus_10107#1 ------------------------------------------------------------ consensus_10107#0 TACAGGTGTCACCTTTTATGAAGGATCATTAGCATGAGCTCAGCAAAAA 1608 consensus_10107#2 ------------------------------------------------- consensus_10107#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||