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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10129#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1871 fasta sequence
[CCTCTTTCCCCTTCCACCGCCACTGCGCCGCAATTCGCCTTCGCTGCGGGCATCTGCAGCAGCAGAATCGTGGGCTGAAATCGAACCACTGCGCGACAAGGGTGCCAAGGATAACTTTATTGTGCTGCTGAAGGAAGACATCTTATTGACCTGCTAGTTCTGTAGATGATTTTTGGAGTGCTATAAATATCGAGGCGCGAGTTCGGACTGCAAGATACAACACAAGAGTGAGAAAAGAAAGGCTTTAGCTGAGTTACAGGATGGAACAAGGTCAGGGAGATAGATACTGGTGCCACCACTGCGAGGAAGTGATCGAACCTGTGGAGCCTGATATGAAGTGTCCTAGCTGTGACAGCGGGTTCGTGGAAGAGATGGGGTCTGCAGGCTTTGAGCCATCGACCAACTTGAGGTCTGATCGTATCTCCCTCTGGGCACCACTGCTGCTCGGGATGATGGGAGGCTCATCGCGGCGAGCAAGGCGGCTCCGAAGGCAGATCATGGAGGATGATGACGACGACGATGACGATGAGGATGATGAAGATGATTCAGACCATGAGCTTGAAGACTTGTTTAGGAGGCAGAGGAGGGGCTCATCTCTTGTAAGGCTGCTCCAGACCCTCCGGGATGACTTGAGGGGCTTGGATGACATTGGCAGGGATAGTGACAGAGACAGGGAAAGGGAGAGAAGGGAGAGGGAGAGGCTGAGGGAGCGGGAGAGGGAGAGGGAGAGGATGAGAGAGAGGGAGAGAGAACGGAGGAGAGAAAGGACAGAAAGCTTGATACTGATCAACTCCAACAATGAGGCCATTATTCTCCAAGGAACATTTGGACCTGATGACAACCAGGATGACTCGAGCAATACAAGTTCTGGTGTTTCACTTGGTGACTACTTTCTTGGTCCTGGATTAGATATCCTCTTGCAGCATTTGGCGGAAAGTGATCTTAATCGTTCTGGTACACCACCTGCCAAGAAGGAAGCTGTAGAAGCATTGCCAACTGTGAACATCCAGGAAG-TG-TTAGGCTGTTCTGTCTGTCTTGAGGATTTCGAAATGGGGACAGAAGCGAAGGAGATGCCTTGTCAACATAAGTTCCACTCCCAGTGCATACTTCCATGGCTGGAGCTACACAGTTCTTGCCCAATCTGTAGGTTTCAGTTGCCTACCGAGGAGTCGAAAAACCCATGTGAATCAGCCGGTGGAATTGTGTCAGTGAACGATGATGGAGATGATGCTGGTACAAGTAGTGACGTAGATAGTGCTAACCAACCTGGTAGTCCTATATTCTCTGCTTTGAGTGCACTTTTCTCAAATCCATCATCCTCATCCTCATCCTCATCTGATGATAATGCACCACACTCTTCTGAGAGCTGAAGCCAGCGCTGGGCCTGGGCTTGCAATATGTCAATGGAGTTCTGAAATGGGACTCCTGAGAGGCCGGCATCTTTATATCTCGTGGTTTCTGTACATATTTTAAAGTTTAATCCGCTAGACAAGCTATTCGCGTTTCCTTTATGAAACCTGTGTGGTTTGTAATCAGTTTGGTGCCTGTTATGTCTAATTATGTAAAATAAAATTTAGCCTCAAGCATGTTTACCTACTCTCAAAAACTTGATCGGGGCCAGAGAACTGCTGATCTGGTTAGCAGCTTGACCAATGCAAGGCTACTTCAGTACTATATATGGGGATATCCAACATTGGCATTTCGCACTGCTTTGTCAATTAAAGAACCCTGTTAGAACAAAGCTGCAGAACAGTTACAGTGCGAAGCAACTTTGTCATCTGCATACTTGTGGAATTTAGGAGTTGCTGATCTAAACTATGATTAGGGTGATCACATCTGCATTTATCCACATATCTGACATTGTGTACTTC]
[+] EMBL AK060419 [CCTCTTTCCCCTTCCACCGCCACTGCGCCGCAATTCGCCTTCGCTGCGGGCATCTGCAGCAGCAGAATCGTGGGCTGAAATCGAACCACTGCGCGACAAGGGTGCCAAGGATAACTTTATTGTGCTGCTGAAGGAAGACATCTTATTGACCTGCTAGTTCTGTAGATGATTTTTGGAGTGCTATAAATATCGAGGCGCGAGTTCGGACTGCAAGATACAACACAAGAGTGAGAAAAGAAAGGCTTTAGCTGAGTTACAGGATGGAACAAGGTCAGGGAGATAGATACTGGTGCCACCACTGCGAGGAAGTGATCGAACCTGTGGAGCCTGATATGAAGTGTCCTAGCTGTGACAGCGGGTTCGTGGAAGAGATGGGGTCTGCAGGCTTTGAGCCATCGACCAACTTGAGGTCTGATCGTATCTCCCTCTGGGCACCACTGCTGCTCGGGATGATGGGAGGCTCATCGCGGCGAGCAAGGCGGCTCCGAAGGCAGATCATGGAGGATGATGACGACGACGATGACGATGAGGATGATGAAGATGATTCAGACCATGAGCTTGAAGACTTGTTTAGGAGGCAGAGGAGGGGCTCATCTCTTGTAAGGCTGCTCCAGACCCTCCGGGATGACTTGAGGGGCTTGGATGACATTGGCAGGGATAGTGACAGAGACAGGGAAAGGGAGAGAAGGGAGAGGGAGAGGCTGAGGGAGCGGGAGAGGGAGAGGGAGAGGATGAGAGAGAGGGAGAGAGAACGGAGGAGAGAAAGGACAGAAAGCTTGATACTGATCAACTCCAACAATGAGGCCATTATTCTCCAAGGAACATTTGGACCTGATGACAACCAGGATGACTCGAGCAATACAAGTTCTGGTGTTTCACTTGGTGACTACTTTCTTGGTCCTGGATTAGATATCCTCTTGCAGCATTTGGCGGAAAGTGATCTTAATCGTTCTGGTACACCACCTGCCAAGAAGGAAGCTGTAGAAGCATTGCCAACTGTGAACATCCAGGAAG TG TTAGGCTGTTCTGTCTGTCTTGAGGATTTCGAAATGGGGACAGAAGCGAAGGAGATGCCTTGTCAACATAAGTTCCACTCCCAGTGCATACTTCCATGGCTGGAGCTACACAGTTCTTGCCCAATCTGTAGGTTTCAGTTGCCTACCGAGGAGTCGAAAAACCCATGTGAATCAGCCGGTGGAATTGTGTCAGTGAACGATGATGGAGATGATGCTGGTACAAGTAGTGACGTAGATAGTGCTAACCAACCTGGTAGTCCTATATTCTCTGCTTTGAGTGCACTTTTCTCAAATCCATCATCCTCATCCTCATCCTCATCTGATGATAATGCACCACACTCTTCTGAGAGCTGAAGCCAGCGCTGGGCCTGGGCTTGCAATATGTCAATGGAGTTCTGAAATGGGACTCCTGAGAGGCCGGCATCTTTATATCTCGTGGTTTCTGTACATATTTTAAAGTTTAATCCGCTAGACAAGCTATTCGCGTTTCCTTTATGAAACCTGTGTGGTTTGTAATCAGTTTGGTGCCTGTTATGTCTAATTATGTAAAATAAA ]
[+] EMBL AK067585 [ TGATTCAGACCATGAGCTTGAAGACTTGTTTAGGAGGCAGAGGAGGGGCTCATCTCTTGTAAGGCTGCTCCAGACCCTCCGGGATGACTTGAGGGGCTTGGATGACATTGGCAGGGATAGTGACAGAGACAGGGAAAGGGAGAGAAGGGAGAGGGAGAGGCTGAGGGAGCGGGAGAGGGAGAGGGAGAGGATGAGAGAGAGGGAGAGAGAACGGAGGAGAGAAAGGACAGAAAGCTTGATACTGATCAACTCCAACAATGAGGCCATTATTCTCCAAGGAACATTTGGACCTGATGACAACCAGGATGACTCGAGCAATACAAGTTCTGGTGTTTCACTTGGTGACTACTTTCTTGGTCCTGGATTAGATATCCTCTTGCAGCATTTGGCGGAAAGTGATCTTAATCGTTCTGGTACACCACCTGCCAAGAAGGAAGCTGTAGAAGCATTGCCAACTGTGAACATCCAGGAAG TG TTAGGCTGTTCTGTCTGTCTTGAGGATTTCGAAATGGGGACAGAAGCGAAGGAGATGCCTTGTCAACATAAGTTCCACTCCCAGTGCATACTTCCATGGCTGGAGCTACACAGTTCTTGCCCAATCTGTAGGTTTCAGTTGCCTACCGAGGAGTCGAAAAACCCATGTGAATCAGCCGGTGGAATTGTGTCAGTGAACGATGATGGAGATGATGCTGGTACAAGTAGTGACGTAGATAGTGCTAACCAACCTGGTAGTCCTATATTCTCTGCTTTGAGTGCACTTTTCTCAAATCCATCATCCTCATCCTCATCCTCATCTGATGATAATGCACCACACTCTTCTGAGAGCTGAAGCCAGCGCTGGGCCTGGGCTTGCAATATGTCAATGGAGTTCTGAAATGGGACTCCTGAGAGGCCGGCATCTTTATATCTCGTGGTTTCTGTACATATTTTAAAGTTTAATCCGCTAGACAAGCTATTCGCGTTTCCTTTATGGAACCTGTGTGGTTTGTAATCAGTTTGGTGCCTGTTATGTCTAATTATGTAAAATAAAATTTAGCCTCAAGCATGTTTACCTACTCTCAAAAACTTGATCGGGGCCAGAGAACTGCTGATCTGGTTAGCAGCTTGACCAATGCAAGGCTACTTCAGTACTATATATGGGGATATCCAACATTGGCATTTCGCACTGCTTTGTCAATTAAAGAACCCTGTTAGAACAAAGCTGCAGAACAGTTACAGTGCGAAGCAACTTTGTCATCTGCATACTTGTGGAATTTAGGAGTTGCTGATCTAAACTATGATTAGGGTGATCACATCTGCATTTATCCACATATCTGACATTGTGTACTTC]
[+] EMBL BI806452 [ GAAGTTGTTTAAGCTGTTCTGTCTTTCTTGAGGATTTCGAAATGGGGACAGAA CGAAGGAGAT CCCTGTCAACATAAGTTCCACTCCCAGTGCATACTTCCATGGCTGGAGCTACACAGTTCTTGCCCAATCTGTA GTTTCAGTTGCCTACCGAGGAGTCGAAAAACCCATGTGAATCACCCGGTGGAATTGTGTCAGTGAACGATGATGGAGATGATGCTGGTACAAGTAGTGACGTAGATAGTGCTAACCAACCTGGTAGTCCTATATTCTCTGCTTTGAGTGCACTTTTCTCAAATCCATCATCCTCATCCTCATCCTCATCTGATGATAATGCACCACACTCTTCTGAGAGCTGAAGCCAGCGCTGGGCCTGGGCTTGCAATATGTCAATGGAGTTCTGAAATGGGACTCCTGAGAGGCCGGCATCTTTATATCTCGTGGTTTCTGTACATATTTTAAAGTTTAATCCGCTAGAC AGCTATTCGCGTTTCCTTTATGAAACCTGTGTGGTTTGTAATCA TTTGGT CCTGTTATGTCTAATTATGTAAAATAAAATTTACCCTCCA CATGTTaaaaaaaa ]
[+] EMBL BM418708 [ GATGATGGAGATGATGCTGGTACAAGTAGTGACGTAGATAGT CTAACCAACCTGGTAGTCCTATATTCTCTGCTTTGAGTGCACTTTTCTCAAATCCATCATCCTCATCCTCATCCTCATCTGATGATAATGCACCACACTCTTCTGAGAGCTGAAGCCAGCGCTGGGCCTGGGCTTGCAATATGTCAATGGAGTTCTGAAATGGGACTCCTGAGAGGCCGGCATCTTTATATCTCGTGGTTTCTGTACATATTTTAAAGTTTAATCCGCTAGACAAGCTATTCGCGTTTCCTTTATGAAACCTGTGTGGTTTGTAATCAGTTTGGTGCCTGTTATGTCTAATTATGTAAAATAAAATTTAGCCTCAAGCATGTTTACCTACTCTCAAAAACTTGATCGGGGCCAGAGAACTGCTGATCTGGTTAGCAGCTTGACCAATGCAAGGCTACTTCAGTACTATATATGGGGATGTCCAACATTGGCATTTCGCACTGCTTTGTCAATTAAAAAAaaaa ]
[-] EMBL AU225126 [ ccgctGCCGGCATCTTTATATCTCGTGGTTTCTGTACATATTTTAAAGTTTAATCCGCTAGACAAGCTATTCGCGTTTCCTTTATGAAACCTGTGTGGTTTGTAATCAGTTTGGTGCCTGTTATGTCTAATTATGTAAAATAAAATTTAGCCTCAAGagcggc ]
[+] EMBL AA751059 [ TGTACATATTTTAAAGTTTAATCCGCTAGACAAGCTATTCGCGTTTCCTTTATGAAACCTGTGTGGTTTCTAATCAGTTTGGTGCCTGTTATGTCTAATTATGTAAAATAAAATT ]
consensusID : consensus_10129#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence
[ACCTCCCAGTGCATACTTCCATGGCTGGAGCGTACACAGTTCTGCCCACATCTGTAGGTTTCAGTTGCCTACCGAGGAGTTGAAAAACCCACTGTGAATCACGCCGGTGGAATTGTGTCAGTGAACGATGATGGAGATGATGCTGGTACACAGTAGTGACGTAGATAGTGCTAACCACACCTGGTAGTCCTATATTCTCTGCTTTTGAGTGCACTTTTCTCAAATCCATCATCCTCATCCTCATCCTCATCTGATGATAATGCACCACACTCTTCTGAGAGCTGAAGCCACGCGCTGGGCCTGGGCTTGCACATATGTCACATGGAGTTCTGAAATGGGACTCCTGAGAGGCCGGCATCTTTATATCTCGTGGTTTCTGTACATATTTTAAAGTTTAATCCGCTAGACCAGCTATTCGCGTTTCCTTTATGAAACCTGTGTGGTTTGTAATCCGTTTGGTGCCTGTTATGTCTAATTATGTAAAATAAAATTTAGCCTCCAAAAAAAAAA]
[+] EMBL BI813105 [ACCTCCCAGTGCATACTTCCATGGCTGGAGCGTACACAGTTCTGCCCACATCTGTAGGTTTCAGTTGCCTACCGAGGAGTTGAAAAACCCACTGTGAATCACGCCGGTGGAATTGTGTCAGTGAACGATGATGGAGATGATGCTGGTACACAGTAGTGACGTAGATAGTGCTAACCACACCTGGTAGTCCTATATTCTCTGCTTTTGAGTGCACTTTTCTCAAATCCATCATCCTCATCCTCATCCTCATCTGATGATAATGCACCACACTCTTCTGAGAGCTGAAGCCACGCGCTGGGCCTGGGCTTGCACATATGTCACATGGAGTTCTGAAATGGGACTCCTGAGAGGCCGGCATCTTTATATCTCGTGGTTTCTGTACATATTTTAAAGTTTAATCCGCTAGACCAGCTATTCGCGTTTCCTTTATGAAACCTGTGTGGTTTGTAATCCGTTTGGTGCCTGTTATGTCTAATTATGTAAAATAAAATTTAGCCTCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10129#0 CCTCTTTCCCCTTCCACCGCCACTGCGCCGCAATTCGCCTTCGCTGCGGGCATCTGCAGC 60
consensus_10129#1 ------------------------------------------------------------
consensus_10129#0 AGCAGAATCGTGGGCTGAAATCGAACCACTGCGCGACAAGGGTGCCAAGGATAACTTTAT 120
consensus_10129#1 ------------------------------------------------------------
consensus_10129#0 TGTGCTGCTGAAGGAAGACATCTTATTGACCTGCTAGTTCTGTAGATGATTTTTGGAGTG 180
consensus_10129#1 ------------------------------------------------------------
consensus_10129#0 CTATAAATATCGAGGCGCGAGTTCGGACTGCAAGATACAACACAAGAGTGAGAAAAGAAA 240
consensus_10129#1 ------------------------------------------------------------
consensus_10129#0 GGCTTTAGCTGAGTTACAGGATGGAACAAGGTCAGGGAGATAGATACTGGTGCCACCACT 300
consensus_10129#1 ------------------------------------------------------------
consensus_10129#0 GCGAGGAAGTGATCGAACCTGTGGAGCCTGATATGAAGTGTCCTAGCTGTGACAGCGGGT 360
consensus_10129#1 ------------------------------------------------------------
consensus_10129#0 TCGTGGAAGAGATGGGGTCTGCAGGCTTTGAGCCATCGACCAACTTGAGGTCTGATCGTA 420
consensus_10129#1 ------------------------------------------------------------
consensus_10129#0 TCTCCCTCTGGGCACCACTGCTGCTCGGGATGATGGGAGGCTCATCGCGGCGAGCAAGGC 480
consensus_10129#1 ------------------------------------------------------------
consensus_10129#0 GGCTCCGAAGGCAGATCATGGAGGATGATGACGACGACGATGACGATGAGGATGATGAAG 540
consensus_10129#1 ------------------------------------------------------------
consensus_10129#0 ATGATTCAGACCATGAGCTTGAAGACTTGTTTAGGAGGCAGAGGAGGGGCTCATCTCTTG 600
consensus_10129#1 ------------------------------------------------------------
consensus_10129#0 TAAGGCTGCTCCAGACCCTCCGGGATGACTTGAGGGGCTTGGATGACATTGGCAGGGATA 660
consensus_10129#1 ------------------------------------------------------------
consensus_10129#0 GTGACAGAGACAGGGAAAGGGAGAGAAGGGAGAGGGAGAGGCTGAGGGAGCGGGAGAGGG 720
consensus_10129#1 ------------------------------------------------------------
consensus_10129#0 AGAGGGAGAGGATGAGAGAGAGGGAGAGAGAACGGAGGAGAGAAAGGACAGAAAGCTTGA 780
consensus_10129#1 ------------------------------------------------------------
consensus_10129#0 TACTGATCAACTCCAACAATGAGGCCATTATTCTCCAAGGAACATTTGGACCTGATGACA 840
consensus_10129#1 ------------------------------------------------------------
consensus_10129#0 ACCAGGATGACTCGAGCAATACAAGTTCTGGTGTTTCACTTGGTGACTACTTTCTTGGTC 900
consensus_10129#1 ------------------------------------------------------------
consensus_10129#0 CTGGATTAGATATCCTCTTGCAGCATTTGGCGGAAAGTGATCTTAATCGTTCTGGTACAC 960
consensus_10129#1 ------------------------------------------------------------
consensus_10129#0 CACCTGCCAAGAAGGAAGCTGTAGAAGCATTGCCAACTGTGAACATCCAGGAAGTGTTAG 1020
consensus_10129#1 ------------------------------------------------------------
consensus_10129#0 GCTGTTCTGTCTGTCTTGAGGATTTCGAAATGGGGACAGAAGCGAAGGAGATGCCTTGTC 1080
consensus_10129#1 ------------------------------------------------------------
consensus_10129#0 AACATAAGTTCCACTCCCAGTGCATACTTCCATGGCTGGAGC-TACACAGTTCTTGCCCA 1139
consensus_10129#1 -----------ACCTCCCAGTGCATACTTCCATGGCTGGAGCGTACACAGTTCTGCCCAC 49
***************************** *********** **
consensus_10129#0 ATCTGTAGGTTTCAGTTGCCTACCGAGGAGTCGAAAAACCCA-TGTGAATCA-GCCGGTG 1197
consensus_10129#1 ATCTGTAGGTTTCAGTTGCCTACCGAGGAGTTGAAAAACCCACTGTGAATCACGCCGGTG 109
******************************* ********** ********* *******
consensus_10129#0 GAATTGTGTCAGTGAACGATGATGGAGATGATGCTGGTACA-AGTAGTGACGTAGATAGT 1256
consensus_10129#1 GAATTGTGTCAGTGAACGATGATGGAGATGATGCTGGTACACAGTAGTGACGTAGATAGT 169
***************************************** ******************
consensus_10129#0 GCTAACCA-ACCTGGTAGTCCTATATTCTCTGCTTT-GAGTGCACTTTTCTCAAATCCAT 1314
consensus_10129#1 GCTAACCACACCTGGTAGTCCTATATTCTCTGCTTTTGAGTGCACTTTTCTCAAATCCAT 229
******** *************************** ***********************
consensus_10129#0 CATCCTCATCCTCATCCTCATCTGATGATAATGCACCACACTCTTCTGAGAGCTGAAGCC 1374
consensus_10129#1 CATCCTCATCCTCATCCTCATCTGATGATAATGCACCACACTCTTCTGAGAGCTGAAGCC 289
************************************************************
consensus_10129#0 A-GCGCTGGGCCTGGGCTTGCA-ATATGTCA-ATGGAGTTCTGAAATGGGACTCCTGAGA 1431
consensus_10129#1 ACGCGCTGGGCCTGGGCTTGCACATATGTCACATGGAGTTCTGAAATGGGACTCCTGAGA 349
* ******************** ******** ****************************
consensus_10129#0 GGCCGGCATCTTTATATCTCGTGGTTTCTGTACATATTTTAAAGTTTAATCCGCTAGACA 1491
consensus_10129#1 GGCCGGCATCTTTATATCTCGTGGTTTCTGTACATATTTTAAAGTTTAATCCGCTAGACC 409
***********************************************************
consensus_10129#0 AGCTATTCGCGTTTCCTTTATGAAACCTGTGTGGTTTGTAATCAGTTTGGTGCCTGTTAT 1551
consensus_10129#1 AGCTATTCGCGTTTCCTTTATGAAACCTGTGTGGTTTGTAATCCGTTTGGTGCCTGTTAT 469
******************************************* ****************
consensus_10129#0 GTCTAATTATGTAAAATAAAATTTAGCCTCAAGCATGTTTACCTACTCTCAAAAACTTGA 1611
consensus_10129#1 GTCTAATTATGTAAAATAAAATTTAGCCTCCAAAAAAAAAA------------------- 510
****************************** * * *
consensus_10129#0 TCGGGGCCAGAGAACTGCTGATCTGGTTAGCAGCTTGACCAATGCAAGGCTACTTCAGTA 1671
consensus_10129#1 ------------------------------------------------------------
consensus_10129#0 CTATATATGGGGATATCCAACATTGGCATTTCGCACTGCTTTGTCAATTAAAGAACCCTG 1731
consensus_10129#1 ------------------------------------------------------------
consensus_10129#0 TTAGAACAAAGCTGCAGAACAGTTACAGTGCGAAGCAACTTTGTCATCTGCATACTTGTG 1791
consensus_10129#1 ------------------------------------------------------------
consensus_10129#0 GAATTTAGGAGTTGCTGATCTAAACTATGATTAGGGTGATCACATCTGCATTTATCCACA 1851
consensus_10129#1 ------------------------------------------------------------
consensus_10129#0 TATCTGACATTGTGTACTTC 1871
consensus_10129#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||