These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10142#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 2803 fasta sequence [GTTGTGAACCGCCCCACCCAAATTTCCCCCAAATCGACGACGACGACGCCCCCAATTGCTCGTCGGCACAAGCAACAACCGCCGCCGCGCCAAGCTAACCCTAGCCCACGAGATGCCCGCGCCCGCGCCCGCGGCGCCGTGGCCCGTGTCGCAGGAGATCTCGTCCCTGGCCGACCGCCTCCTCGCCCACGCCGGCGGCGACGGCGACGGCGCCGCGGGGATGCGGGACCTCGCGGGCGCGCTCCTCCGGATCCAGCCCGTCGCGCGCGGGGTCGAGCGGCGCGGGGACGCGGGGCAGCGCGACCTCGCGGACTGGCTCCTCCAGCTCAAGGGCGCCGTCGCCGAGGCCGACGACCTCCTCGACGAGCTCCTCCTCCGCCGCCGCCACGGGAGCCGGCTCAGCCCTTCGTTAGCGTCCTGCTTAGCTCGCGGCAAGCCGCCCTCCCGGGAGCTCAAGCGACTGGTGGGCAGGATCGACCGCATCCACGACGTCTCCGAGCGTCTCGTTGACGCCGCGGCGGAAGAAGAAGCCGGCGAGGCGGGTCGCGGCGTGAGGTCGCCGAACCGCGTGACCGGCTCCGTGCTCACGGAGAGGAAGGTGTTTGGGCGTGAGAAAGAGTGTGGCGAGGTAATCAGCAGGCTGGTGGATTGTCCGGAGAATGCATGCTCTTCTGCTCTTCCGGTTGTTGCAATCGTCGGACATGGTGGAATGGGGAAGACAACCGTTGCGCAGTTCGTTTACAACGATGAGAGGATTGAACAGAAATTTGATATCAAAGCCTGGGTCTGTGTCTGGGATAGATCTGATGCCGCAGAGCTAACAAGGGAGATATTGCAGTCCATTGGTGGTCCGGATGATACGCTGTACGGTGATAATTCTGCCAAATTGGATATTCTGCAGGCAAAACTTGAAGTATTGGTCAGGTCAAAGAGGTTTCTACTAGTTCTTGATGATGTTTGGAATGATGAGGCTAAGATGGAGCTGGAGAATAAGGATCTGTGGAGAAAGGTGCTGGCACCTCTTAGGTCTGCCGGGAGAGGCAGCAAGATCTTGGTGACCACTCGAATGAAACTAGTAGCGCGGTATCTCAATTCGACTCATGTTGTCTCCCTTGATGTGTTGGGAAGCAGCGACTGCTGGTTGTTGTTAAAGGAGGCTGCTCTGGGTGGAGAAAGCAAGGATATTCCTCCTGATTTGCAAGAGATTGGAAGAACCATTGCTGCAAAGGCAAAGGGCTCCCCTTTAGTTTCCAAGGCTCTTGGACAGATGCTAAGAAACACCAGGAGTACATGGAGGTGGAGAGCACTTCTGGATGCAGAAATTAGTCATAACATCATTATATCGTCTCTCCAACACAGTTATCAGCACTTACCTGGACACCTTCAGCGATGCTTTGCATACTGCAGCATATTTCCAAGGGGCTGTAGGTTTCAACGAGATAAATTGGTGAAGATGTGGGTGGCTCTGGGTTTTATTCAAACATCAAGGAAGGAAAGAAAAGGGGAGTATGATTTAGCACAAGAATACTTTTATGATCTGCTTTCACGGTCATTCTTCTGTGCTGCCAGCAAAGACAACCAAACATTTTATTTCCTAGATAACCTCATGCACGATTTGGCACAGCACGCTTCTGTTCACGATTGCATGAAAATTGATGAAGGCATGCCTAGTGTGATTCCACCAACAGTGCGCCACTTGTCTGTCTCAACTGATTATTTTCCACAGCTCAAGAGTAAGTGTAAGTTGGAAAGGCTACGGACATTATTAGTTCTTAGAAGCTCTTCGTTGTCATTGAGTCATCTTCCTAGTAAATTTCTATCTGAATTTAAGAACTTGCGTGTTCTTGATCTTAGTGAGTCAGATATTTTAGAATTACCAGAAACCATTAGCCAGTTGTTTCATCTTCATTACCTAGCTTTATGCCACATGACTAGCAAACTTCCCAAATGTATATACAAGCTTGTACAGAGTGGTGTCCTGGATATGCCTATACTGCTATTTCCTGATAGTCATCCTAGAGGTATGAGCAAATTTGTCA-CACAGAAAACATC-TTGAAAC-TTGTTGCAACACCAACAAGGGGTAGTCAGACT-GTATCAAGGCCTAATTTTGCTTCCAATAAAAGCAGATTATTCCTAAAGAATATCAACAAGGGGGTGTGGTTGGTCTATGAAGGCTGTGCATAATGAAGGGAGTTGCCA-TTTCGTAGGTACAAGAGATCTGGTGGACTCAAATCTGTCAGAGACTTTCAGTGTGTGTGCACTAATTTGTTGTCTGATCAACGGAACAACTTACCATGAGATAGTATTCTAATTTGGT-GGATCAAGTC-TTTCCAGAATGTGATAAAGCAAGGATCTGGTTGCACACATCCTTCAAAAGGTTGAAG-TATTTCCTGTTGGTGTTTTGTACCAATGTTCTCCAGGTCAATTGGCAGTATTTCAAGCCTTGTATCACTGGAGTAGCTACCCACTTTGCTTATATTTGGTATTCTGACAAGATCTGTAGAGTCTTCTCTTTCTATTTTCATTTTCACATTTTGTAAGCTATTGTACTTTTTATTTCACTCGGGTTGTCCACTACTGATCTTTTTCTTTCAAGGAAAGAAGAAAAAGAATGATGATTTGAGACTAAAAAAAAAATGCATGTTGCTGTAATGGATTGTGCACTCCATTTTATGATGGTGTGCATTGGATTTCAGNNNCTCATTAGTCTCAATNNACGATATACCGTANGTTCTGATAGATGGGGGAAACANGNANNNNNNNNGTGAAACTTGGNNGCATAAACCACATTTGCTANNNNNNN] [+] EMBL AK120791 [GTTGTGAACCGCCCCACCCAAATTTCCCCCAAATCGACGACGACGACGCCCCCAATTGCTCGTCGGCACAAGCAACAACCGCCGCCGCGCCAAGCTAACCCTAGCCCACGAGATGCCCGCGCCCGCGCCCGCGGCGCCGTGGCCCGTGTCGCAGGAGATCTCGTCCCTGGCCGACCGCCTCCTCGCCCACGCCGGCGGCGACGGCGACGGCGCCGCGGGGATGCGGGACCTCGCGGGCGCGCTCCTCCGGATCCAGCCCGTCGCGCGCGGGGTCGAGCGGCGCGGGGACGCGGGGCAGCGCGACCTCGCGGACTGGCTCCTCCAGCTCAAGGGCGCCGTCGCCGAGGCCGACGACCTCCTCGACGAGCTCCTCCTCCGCCGCCGCCACGGGAGCCGGCTCAGCCCTTCGTTAGCGTCCTGCTTAGCTCGCGGCAAGCCGCCCTCCCGGGAGCTCAAGCGACTGGTGGGCAGGATCGACCGCATCCACGACGTCTCCGAGCGTCTCGTTGACGCCGCGGCGGAAGAAGAAGCCGGCGAGGCGGGTCGCGGCGTGAGGTCGCCGAACCGCGTGACCGGCTCCGTGCTCACGGAGAGGAAGGTGTTTGGGCGTGAGAAAGAGTGTGGCGAGGTAATCAGCAGGCTGGTGGATTGTCCGGAGAATGCATGCTCTTCTGCTCTTCCGGTTGTTGCAATCGTCGGACATGGTGGAATGGGGAAGACAACCGTTGCGCAGTTCGTTTACAACGATGAGAGGATTGAACAGAAATTTGATATCAAAGCCTGGGTCTGTGTCTGGGATAGATCTGATGCCGCAGAGCTAACAAGGGAGATATTGCAGTCCATTGGTGGTCCGGATGATACGCTGTACGGTGATAATTCTGCCAAATTGGATATTCTGCAGGCAAAACTTGAAGTATTGGTCAGGTCAAAGAGGTTTCTACTAGTTCTTGATGATGTTTGGAATGATGAGGCTAAGATGGAGCTGGAGAATAAGGATCTGTGGAGAAAGGTGCTGGCACCTCTTAGGTCTGCCGGGAGAGGCAGCAAGATCTTGGTGACCACTCGAATGAAACTAGTAGCGCGGTATCTCAATTCGACTCATGTTGTCTCCCTTGATGTGTTGGGAAGCAGCGACTGCTGGTTGTTGTTAAAGGAGGCTGCTCTGGGTGGAGAAAGCAAGGATATTCCTCCTGATTTGCAAGAGATTGGAAGAACCATTGCTGCAAAGGCAAAGGGCTCCCCTTTAGTTTCCAAGGCTCTTGGACAGATGCTAAGAAACACCAGGAGTACATGGAGGTGGAGAGCACTTCTGGATGCAGAAATTAGTCATAACATCATTATATCGTCTCTCCAACACAGTTATCAGCACTTACCTGGACACCTTCAGCGATGCTTTGCATACTGCAGCATATTTCCAAGGGGCTGTAGGTTTCAACGAGATAAATTGGTGAAGATGTGGGTGGCTCTGGGTTTTATTCAAACATCAAGGAAGGAAAGAAAAGGGGAGTATGATTTAGCACAAGAATACTTTTATGATCTGCTTTCACGGTCATTCTTCTGTGCTGCCAGCAAAGACAACCAAACATTTTATTTCCTAGATAACCTCATGCACGATTTGGCACAGCACGCTTCTGTTCACGATTGCATGAAAATTGATGAAGGCATGCCTAGTGTGATTCCACCAACAGTGCGCCACTTGTCTGTCTCAACTGATTATTTTCCACAGCTCAAGAGTAAGTGTAAGTTGGAAAGGCTACGGACATTATTAGTTCTTAGAAGCTCTTCGTTGTCATTGAGTCATCTTCCTAGTAAATTTCTATCTGAATTTAAGAACTTGCGTGTTCTTGATCTTAGTGAGTCAGATATTTTAGAATTACCAGAAACCATTAGCCAGTTGTTTCATCTTCATTACCTAGCTTTATGCCACATGACTAGCAAACTTCCCAAATGTATATACAAGCTTGTACAGAGTGGTGTCCTGGATATGCCTATACTGCTATTTCCTGATAGTCATCCTAGAGGTATGAGCAAATTTGTCA CACAGAAAACATC TTGAAAC TTGTTGCAACACCAACAAGGGGTAGTCAGACT GTATCAAGGCCTAATTTTGCTTCCAATAAAAGCA ] [+] EMBL AK120513 [ CAAGCAACAACCGCCGCCGCGCCAAGCTAACCCTAGCCCACGAGATGCCCGCGCCCGCGCCCGCGGCGCCGTGGCCCGTGTCGCAGGAGATCTCGTCCCTGGCCGACCGCCTCCTCGCCCACGCCGGCGGCGACGGCGACGGCGCCGCGGGGATGCGGGACCTCGCGGGCGCGCTCCTCCGGATCCAGCCCGTCGCGCGCGGGGTCGAGCGGCGCGGGGACGCGGGGCAGCGCGACCTCGCGGACTGGCTCCTCCAGCTCAAGGGCGCCGTCGCCGAGGCCGACGACCTCCTCGACGAGCTCCTCCTCCGCCGCCGCCACGGGAGCCGGCTCAGCCCTTCGTTAGCGTCCTGCTTAGCTCGCGGCAAGCCGCCCTCCCGGGAGCTCAAGCGACTGGTGGGCAGGATCGACCGCATCCACGACGTCTCCGAGCGTCTCGTTGACGCCGCGGCGGAAGAAGAAGCCGGCGAGGCGGGTCGCGGCGTGAGGTCGCCGAACCGCGTGACCGGCTCCGTGCTCACGGAGAGGAAGGTGTTTGGGCGTGAGAAAGAGTGTGGCGAGGTAATCAGCAGGCTGGTGGATTGTCCGGAGAATGCATGCTCTTCTGCTCTTCCGGTTGTTGCAATCGTCGGACATGGTGGAATGGGGAAGACAACCGTTGCGCAGTTCGTTTACAACGATGAGAGGATTGAACAGAAATTTGATATCAAAGCCTGGGTCTGTGTCTGGGATAGATCTGATGCCGCAGAGCTAACAAGGGAGATATTGCAGTCCATTGGTGGTCCGGATGATACGCTGTACGGTGATAATTCTGCCAAATTGGATATTCTGCAGGCAAAACTTGAAGTATTGGTCAGGTCAAAGAGGTTTCTACTAGTTCTTGATGATGTTTGGAATGATGAGGCTAAGATGGAGCTGGAGAATAAGGATCTGTGGAGAAAGGTGCTGGCACCTCTTAGGTCTGCCGGGAGAGGCAGCAAGATCTTGGTGACCACTCGAATGAAACTAGTAGCGCGGTATCTCAATTCGACTCATGTTGTCTCCCTTGATGTGTTGGGAAGCAGCGACTGCTGGTTGTTGTTAAAGGAGGCTGCTCTGGGTGGAGAAAGCAAGGATATTCCTCCTGATTTGCAAGAGATTGGAAGAACCATTGCTGCAAAGGCAAAGGGCTCCCCTTTAGTTTCCAAGGCTCTTGGACAGATGCTAAGAAACACCAGGAGTACATGGAGGTGGAGAGCACTTCTGGATGCAGAAATTAGTCATAACATCATTATATCGTCTCTCCAACACAGTTATCAGCACTTACCTGGACACCTTCAGCGATGCTTTGCATACTGCAGCATATTTCCAAGGGGCTGTAGGTTTCAACGAGATAAATTGGTGAAGATGTGGGTGGCTCTGGGTTTTATTCAAACATCAAGGAAGGAAAGAAAAGGGGAGTATGATTTAGCACAAGAATACTTTTATGATCTGCTTTCACGGTCATTCTTCTGTGCTGCCAGCAAAGACAACCAAACATTTTATTTCCTAGATAACCTCATGCACGATTTGGCACAGCACGCTTCTGTTCACGATTGCATGAAAATTGATGAAGGCATGCCTAGTGTGATTCCACCAACAGTGCGCCACTTGTCTGTCTCAACTGATTATTTTCCACAGCTCAAGAGTAAGTGTAAGTTGGAAAGGCTACGGACATTATTAGTTCTTAGAAGCTCTTCGTTGTCATTGAGTCATCTTCCTAGTAAATTTCTATCTGAATTTAAGAACTTGCGTGTTCTTGATCTTAGTGAGTCAGATATTTTAGAATTACCAGAAACCATTAGCCAGTTGTTTCATCTTCATTACCTAGCTTTATGCCACATGACTAGCAAACTTCCCAAATGTATATACAAGCTTGTACAGAGTGGTGTCCTGGATATGCCTATACTGCTATTTCCTGATAGTCATCCTAGAGGTATGAGCAAATTTGTCA CACAGAAAACATC TTGAAAC TTGTTGCAACACCAACAAGGGGTAGTCAGACT GTATCAAGGCCTAATTTTGCTTCCAATAAAAGCAGATTATTCCTAAAGAATATCAACAAGGGGGTGTGGTTGGTCTATGAAGGCTGTGCATAATGAAGGGAGTTGCCA TTTCGTAGGTACAAGAGATCTGGTGGACTCAAATCTGTCAGAGACTTTCAGTGTGTGTGCACTAATTTGTTGTCTGATCAACGGAACAACTAACCATGAGATAGTATTCTAATTTGGT GGATCAAGTC TTTCCAGAATGTGATAAAGCAAGGATCTGGTTGCACACATCCTTCAAAAGGTTGAAG TATTTCCTGTTGGTGTTTTGTACCAATGTTCTCCAGGTCAATTGGCAGTATTTCAAGCCTTGTATCACTGGAGTAGCTACCCACTTTGCTTATATTTGGTATTCTGACAAGATCTGTACAGTCTTCTCTTTCTATTTTCATTTTCACATTTTGTAAGCTGTTGTACTTTTTATTTCACTCGGGTTGTCCACTACTGATCTTTTTCTTTCAAGGAAAGAAGAAAAAGAATGATGATTTGAGACTACATTTTTGTTGCATGTTGCTGTAATGGATTGTGCACTCCATTTTATGATGGTGTGCATT ] [+] EMBL BI809811 [ ATAGTCATCCTAGAAGTATGACCAAATTTGTCA CACAGAAAACATC TTGAAAC TTGTT CAACACCAACAAGGGTTAGTCAGACTGGTATCAA GCCTAATTTTGCTTCCCATAAAA CAGATTATTCCTAAAGAATATCAACAAGGGGGTGTGGTTGGTCTATGAA GCTGTGCATAATGAAGGGAGTTGCCACTTTCGTAGGTACAAGAGATCTGGTGGACTC AATCTGTCAGAGACTTTCAGTGTGTGTGCACTAATTTGTTGTCTGATCAACGGAACAACTTACCATGAGATAGTATTCTAATTTGGTGGGATCAAGTCTTTTCCAGAATGTGATAAAGCAAGGATCTGGTTGCACACATCCTTCAAAA GTTGAAGTTATTTCCTGTTGGT TTTTGTACCAATGTTCTCCAGGTCAATTGGCAGTATTTCAAGCCTTGTATCACTGGAGTAGCTACCCACTTTGCTTATATTTGGTATTCTGACAAGATCTGTAGAGTCTTCTCTTTCTATTTTCATTTTCACATTTTGTAAGCTATTGTACTTTTTATTTCACTCGGGTTGTCCACTACTGATCTTTTTCTTTCAAGGAAAGAAGAAAAAGAATGATGATTTGAGACTAAAAAAAAAA ] [+] EMBL BM418781 [ gaGTATGAGCAA TTGTCACCACAG GAACATCGTTGAAACTTTGTTGCAACACCAACAAGGGGTAGTCAGACT GTATCAAGGCCTAATTTTGCTTCCAATAAAAGCAGATTATTCCTAAAGAATATCAACAAGGGGGTGTGGTTGGTCTATGAAGGCTGTGCATAATGAAGGGAGTTGCCA TTTCGTAGGTACAAGAGATCTGGTGGACTCAAATCTGTCAGAGACTTTCAGTGTGTGTGCACTAATTTGTTGTCTGATCAACGGAACAACTTACCATGAGATAGTATTCTAATTTGGT GGATCAAGTC TTTCCAGAATGTGATAAAGCAAGGATCTGGTTGCACACATCCTTCAAAAGGTTGAAG TATTTCCTGTTGGTGTTTTGTACC ATGTTCTCCAGGTC ATTGGCAGTATTTCAAGCCTTGTATCACTGGAGTAGCTACCCACTTTGCTTATATTTGGTATTCTGACAAGATCTGTAGAGTCTTCTCTTTCTATTTTCATTTTCACATTTTGTAAGCTATTGTACTTTTTATTTCACTCGGGTTGTCCACTACTGATCTTTTTCTTTCAAGGAAAGAAGAAAAAGAATGATGATTTGAGACTAAAAAAAAAA ] [+] EMBL CF196032 [ CAATAAAAGCAGATTATTCCTAAAGAATATCAACAAGGGGGTGTGGTTGGTCTATGAAGGCTGTGCATAATGAAGGGAGTTGCCA TTTCGTAGGTACAAGAGATCTGGTGGACTCAAATCTGTCAGAGACTTTCAGTGTGTGTGCACTAATTTGTTGTCTGATCAACGGAACAACTTACCATGAGATAGTATTCTAATTTGGT GGATCAAGTC TTTCCAGAATGTGATAAAGCAAGGATCTGGTTGCACACATCCTTCAAAAGGTTGAAG TATTTCCTGTTGGTGTTTTGTACCAATGTTCTCCAGGTCAATTGGCAGTATTTCAAGCCTTGTATCACTGGAGTAGCTACCCACTTTGCTTATATTTGGTATTCTGACAAGATCTGTAGNGTCTTCTCTTTCTATTTTCATTTTCACATTTTGTAAGCTATTGTACTTTTTATTTCACTCGGGTTGTCCACTACTGATCTTTTTCNNNNNNNGAAAGANNNNNNNGAATGATGATTTGAGNCTNNNAAAAAAA ] [+] EMBL AU173927 [ GTAGGTACAAGAGATCTGGTGGACTCAAATCTGTCAGAGACTTTCAGTGTGTGTGCACTAATTTGTTGTCTGATCAACGGAACAACTAACCATGAGATAGTATTCTAATTTGGT GGATCAAGTC TTTCCAGAATGTGATAAAGCAAGGATCTGGTTGCACACATCCTTCAAAAGGTTGAAG TATTTCCTGTTGGTGTTTTGTACCAATGTTCTCCAGGTCAATTGGCAGTATTTCAAGCCTTGTATCACTGGAGTAGCTACCCNCTTTGCTTATATTTGGTATTCTGACAAGATCTGTACAGTCTTCTCTTTCTATTTTCATTTTCACATTTTGTAAGCTGTTGTACTTTTTATTTCACTCGGGTTGTCCACTACTGATCTTTTTCTTTCAAGGAAAGAAGAAAAAGAATGATGATTTGAGNCTAAAAAAAAAAaa ] [+] EMBL CF196781 [ AGTATTCTAATTTGGT GGATCAAGTC TTTCCAGAATGTGATAAAGCAAGGATCTGGTTGCACACATCCTTCAAAAGGTTGAAG TATTTCCTTTTGGTGTTTTGTACCAATGTTCTCCAGGTCAATTGGCAGTATTTCAAGCCTTGTATCACTGGAGTAGCTACCCACTTTGCTTATATTTGGTATTCTGACAAGATCTGTAGAGTCTTCTCTTTCTATTTTCATTTTCACATTTTGTAAGCTATTGTACTTTTTATTTCACTCGGGTTGTCCACTACTGATCTTTTTCTTTCAAGGAAAGAAGAAAAAGAATGATGATTTGAGACTACATTTTTGTTGCATGTTGCTGTAATGGATTGTGCACTCCATTTCATGATGGTGTGCATTGGATTTCAGNNNCTCATTAGTCTCAATNNACGATATACCGTANGTTCTGATAGATGGGGGAAACANGNANNNNNNNNGTGAAACTTGGNNGCATAAACCACATTTGCTANNNNNNN] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||