These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10143#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1060 fasta sequence [TCCTCTCAAAAAGGATGGTCCGGTGCATGATGTGCAGTGGTCTTACTCAGGTTCAGAATTTGCTGTGGTCTATGGATTTATGCCGGCCAGAGCAACAATATTCAACAAAAAATGCAACCCTCTTCTGGAGCTTTTTTAAGGCCCCTACAATACAATAAGATGGAACCCAAAAGGGCGATTTATCGTTTTAGCAGGGTTTGGTAATTTGCCTGGTGACATGGCATTCTGGGATTATTCAGAAAAGAAATTGGTAGGAAAAACAAAGGCTGAATGTTCTGTTACGAGTGAATGGTCCCCTGATGGTCGCCATTTTATGACTGCTACAACAGCTCCGAGACTCCAAATAGACAACGGGATTAAAATATTTGACCACAATGGATCTCTGCAGTTCAAGAAGATGTTTGAAAAGCTGTATCAGGCTGACTGGAAGCCAGAAGCGCCTGAAAAATTTAGTGACATTGCCGACCTCACGATATCGTTGGGTAGCATAAAAATTGAAGAAACGAAAAAACAAGTTTCAGCACAGGGTTCTAAATCAGCACA-ACCATCAAGCAAGGCCC-CTGCAAATATAGCAGCGAAACCTAC-AGCATATCGACCACCTCATTCAAAGAATTCTGCAGATGTTCAGGATAAGCTTTTTGGTGGGCTTGCTTCTACGGGAGGAGAGATGAGCAAAAATGCACTGAGAAATAAGAAGCGCAGAGAGAAACAGAAGGAGAAGAAGGCTGCTGAAGGATCCGGAGCCTCTGCTGATGACAATTAAATCCACTTCTACTCAGTGAAATGGTGTCTCAATCCAGAAAAATGGCATTTTGCCATTTGAAATGTAATCACGCGAATATGCTGTCAAAGTAACACTGCCTGGGAAACTGTCCTTGATTCCGCGCGATTAATGCACCCTGCTTCTTAGATCTGTTGTTTCTTGAAACAAGAACGGCTCGAAATTTTGATAGTTTTTGAAGTTTGAACTGATGGTTTGTATGACAAAACCAAAAGATACTATCAAAGCTA-TCCATTCATTTCGTTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF306185 [TCCTCTCAAAAAGGATGGTCCGGTGCATGATGTGCAGTGGTCTTACTCAGGTTCAGAATTTGCTGTGGTCTATGGATTTATGCCGGCCAGAGCAACAATATTCAACAAAAAATGCAACCCTCTTCTGGAGCTTTTTTAAGGCCCCTACAATACAATAAGATGGAACCCAAAAGGGCGATTTATCGTTTTAGCAGGGTTTGGTAATTTGCCTGGTGACATGGCATTCTGGGATTATTCAGAAAAGAAATTGGTAGGAAAAACAAAGGCTGAATGTTCTGTTACGAGTGAATGGTCCCCTGATGGTCGCCATTTTATGACTGCTACAACAGCTCCGAGACTCCAAATAGACAACGGGATTAAAATATTTGACCACAATGGATCTCTGCAGTTCAAGAAGATGTTTGAAAAGCTGTATCAGGCTGACTGGAAGCCAGAAGCGCCTGAAAAATTTAGTGACATTGCCGACCTCACGATATCGTTGGGTAGCATAAAAATTGAAGAAACGAAAAAACAAGTTTCAGCACAGGGTTCTAAATCAGCACA ACCATCAAGCAAGGCCC CTGCAAATATAGCAGCGAAACCTAC AGCATATCGACCACCTCATTCAAAGAATTCTGCAGATGTTCAGGATAAGCTTTTTGGTGGGCT ] [+] EMBL BM037824 [ ttatgtccGATGGTC CCATGTTATGACTTCTACCA GGCTCCGAG CTCC CATAGCC CGGGATTTAAATATTTGACCACGATGGATCTCTGCAG TCAAAAAGA TTTGAAAA CTGTATCA GCTGACTGGAACCAAGAAGCGCCTGAAAAATTTAGTGACATT CCGACCTCACGATATC TTGGGTAGCATAAAAATTGAAGAAACGAAAAAACAAGTTTCAGCACAGGGTTCTAAATCAGCACATACCATCAAGCAAGGCCCACT CAAATATAGCAGCGAAACCTACAAGCATATCGACCACCTCATTCAAAGAATTCTGCAGATGTTCAGGATAAGCTTTTTGGTGGGCTTGCTTCTACGGGAGGAGAGATGA CCAAAATGCACTGAGAAATAAGAAGC CAGAGAGAAACNGAAGGAGAAGAAGGCTGCTGAAGGATCCGGAGCCTCTGCTGATGACAATTAAATCCACTTCTACTCAGTGAAATGGTGTCTC ATCCAGAAAAATGGCATTTTGCCATTTGAAATGTAATCACGCGAATATGCTGTCAAAGTAAC CTGCCTGGGAAACTGTCCTTGATTCCGCGCGATTAATGCACCCTGCTTCTTAGAaaaaaaaaa ] [+] EMBL BE039597 [ AATTTAGTGACATTGCCGACCTCACGATATCGTTGGGTAGCATAAAAATTGAAGAAACGAAAAAACAAGTTTCAGCACAGGGTTCTAAATCAGCACA ACCATCAAGCAAGGCCC CTGCAAATATAGCAGCGAAACCTAC AGCATATCGACCACCTCATTCAAAGAATTCTGCAGATGTTCAGGATAAGCTTTTTGGTGGGCTTGCTTCTACGGGAGGAGAGATGAGCAAAAATGCACTGAGAAATAAGAAGCGCAGAGAGAAACAGAAGGAGAAGAAGGCTGCTGAAGGATCCGGAGCCTCTGCTGATGACAATTAAATCCACTTCTACTCAGTGAAATGGTGTCTCAATCCAGAAAAATGGCATTTTGCCATTTGAAATGTAATCACGCGAATATGCTGTCAAAGTAACACTGCCTGGGAAACTGTC ] [-] EMBL CB636510 [ TTGCCGACCTCACGATATCGTTGGGTAGCATAAAAATTGAAGAAACGAAAAAACAAGTTTCAGCACAGGGTTCTAAATCAGCACA ACCATCAAGCAAGGCCC CTGCAAATATAGCAGCGAAACCTAC AGCATATCGACCACCTCATTCAAAGAATTCTGCAGATGTTCAGGATAAGCTTTTTGGTGGGCTTGCTTCTACGGGAGGAGAGATGAGCAAAAATGCACTGAGAAATAAGAAGCGCAGAGAGAAACAGAAGGAGAAGAAGGCTGCTGAAGGATCCGGAGCCTCTGCTGATGACAATTAAATCCACTTCTACTCAGTGAAATGGTGTCTCAATCCAGAAAAATGGCATTTTGCCATTTGAAATGTAATCACGCGAATATGCTGTCAAAGTAACACTGCCTGGGAAACTGTCCTTGATTCCGCGCGATTAATGCACCCTGCTTCTTAGATCTGTTGTTTCTTGAAACAAGAACGGCTCGAAATTTTGATAGTTTTTGAAGTTTGAACTGATGGTTTGTATGACAAAACCAAAAGATACTATCAAAGCTA TCCATTC ] [+] EMBL AU162342 [ ATGAGCAAAAATGCACTGAGAAATAAGAAGCGCAGAGAGAAACAGAAGGAGAAGAAGGCTGCTGAAGGATCCGGAGCCTCTGCTGATGACAATTAAATCCACTTCTACTCAGTGAAATGGTGTCTCAATCCAGAAAAATGGCATTTTGCCATTTGAAATGTAATCACGCGAATATGCTGTCAAAGTAACACTGCCTGGGAAACTGTCCTTGATTCCGCGCGATTAATGCACCCTGCTTCTTAGATCTGTTGTTTCTTGATACAAGAACGGCTCGAAATTTTGATAGTTTTTGAAGTTTGAACTGATGGTTTGTATGACAAAACCAAAAGATACTATCAAAGCTACTCCTTTCATTTCGTTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10143#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [ACAAGAACGGCTCGAAATTTTGATAGTTTTTGAAGTATGAACTGATGGTTTGTATGACAAAACCAAAAGATACTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATAAAAAAAAAACAAAGGGCCGCACACATACCCCATTCCCAACAGCTACGCAGTACTGAATTGATAAAGCCCTCAAACACCG] [+] EMBL CA758219 [ACAAGAACGGCTCGAAATTTTGATAGTTTTTGAAGTATGAACTGATGGTTTGTATGACAAAACCAAAAGATACTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATAAAAAAAAAACAAAGGGCCGCACACATACCCCATTCCCAACAGCTACGCAGTACTGAATTGATAAAGCCCTCAAACACCG] consensusID : consensus_10143#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 98 fasta sequence [GCAATCAGGCTAACCGCTCGAAATTTTGATAGTTTTTGAAGTTTGAACTGATGGTTTGTATGACACCAAAGATACTATCAAGCTACTCCTTTCAAAAA] [+] EMBL BI795258 [GCAATCAGGCTAACCGCTCGAAATTTTGATAGTTTTTGAAGTTTGAACTGATGGTTTGTATGACACCAAAGATACTATCAAGCTACTCCTTTCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10143#0 TCCTCTCAAAAAGGATGGTCCGGTGCATGATGTGCAGTGGTCTTACTCAGGTTCAGAATT 60 consensus_10143#2 ------------------------------------------------------------ consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 TGCTGTGGTCTATGGATTTATGCCGGCCAGAGCAACAATATTCAACAAAAAATGCAACCC 120 consensus_10143#2 ------------------------------------------------------------ consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 TCTTCTGGAGCTTTTTTAAGGCCCCTACAATACAATAAGATGGAACCCAAAAGGGCGATT 180 consensus_10143#2 ------------------------------------------------------------ consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 TATCGTTTTAGCAGGGTTTGGTAATTTGCCTGGTGACATGGCATTCTGGGATTATTCAGA 240 consensus_10143#2 ------------------------------------------------------------ consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 AAAGAAATTGGTAGGAAAAACAAAGGCTGAATGTTCTGTTACGAGTGAATGGTCCCCTGA 300 consensus_10143#2 ------------------------------------------------------------ consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 TGGTCGCCATTTTATGACTGCTACAACAGCTCCGAGACTCCAAATAGACAACGGGATTAA 360 consensus_10143#2 ------------------------------------------------------------ consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 AATATTTGACCACAATGGATCTCTGCAGTTCAAGAAGATGTTTGAAAAGCTGTATCAGGC 420 consensus_10143#2 ------------------------------------------------------------ consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 TGACTGGAAGCCAGAAGCGCCTGAAAAATTTAGTGACATTGCCGACCTCACGATATCGTT 480 consensus_10143#2 ------------------------------------------------------------ consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 GGGTAGCATAAAAATTGAAGAAACGAAAAAACAAGTTTCAGCACAGGGTTCTAAATCAGC 540 consensus_10143#2 ------------------------------------------------------------ consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 ACAACCATCAAGCAAGGCCCCTGCAAATATAGCAGCGAAACCTACAGCATATCGACCACC 600 consensus_10143#2 ------------------------------------------------------------ consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 TCATTCAAAGAATTCTGCAGATGTTCAGGATAAGCTTTTTGGTGGGCTTGCTTCTACGGG 660 consensus_10143#2 ------------------------------------------------------------ consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 AGGAGAGATGAGCAAAAATGCACTGAGAAATAAGAAGCGCAGAGAGAAACAGAAGGAGAA 720 consensus_10143#2 ------------------------------------------------------------ consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 GAAGGCTGCTGAAGGATCCGGAGCCTCTGCTGATGACAATTAAATCCACTTCTACTCAGT 780 consensus_10143#2 ------------------------------------------------------------ consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 GAAATGGTGTCTCAATCCAGAAAAATGGCATTTTGCCATTTGAAATGTAATCACGCGAAT 840 consensus_10143#2 ------------------------------------------------------------ consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 ATGCTGTCAAAGTAACACTGCCTGGGAAACTGTCCTTGATTCCGCGCGATTAATGCACCC 900 consensus_10143#2 ------------------------------------------------------------ consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 TGCTTCTTAGATCTGTTGTTTCTTGAAACAAG--AACGGCTCGAAATTTTGATAGTTTTT 958 consensus_10143#2 -----------------------GCAATCAGGCTAACCGCTCGAAATTTTGATAGTTTTT 37 consensus_10143#1 ---------------------------ACAAG--AACGGCTCGAAATTTTGATAGTTTTT 31 ** * *** ********************** consensus_10143#0 GAAGTTTGAACTGATGGTTTGTATGACAAAACCAAAAGATACTATCAAAGCTATCCATTC 1018 consensus_10143#2 GAAGTTTGAACTGATGGTTTGTATGACA----CCAAAGATACTATCAAG-----CTACTC 88 consensus_10143#1 GAAGTATGAACTGATGGTTTGTATGACAAAACCAAAAGATACTATCAAAAAAAAAAAAAA 91 ***** ********************** * ************** * consensus_10143#0 ATTTCGTTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------ 1060 consensus_10143#2 CTTTCAAAAA-------------------------------------------------- 98 consensus_10143#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 151 * consensus_10143#0 ------------------------------------------------------------ consensus_10143#2 ------------------------------------------------------------ consensus_10143#1 AAGATAAAAAAAAAACAAAGGGCCGCACACATACCCCATTCCCAACAGCTACGCAGTACT 211 consensus_10143#0 ------------------------- consensus_10143#2 ------------------------- consensus_10143#1 GAATTGATAAAGCCCTCAAACACCG 236 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||