These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10183#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1314 fasta sequence [AGAGAGTCGCAGATCGAGAGAGCTAACGATTTCTCATCTCGCGGTGGCCATGGCGGGTAGCAGCTACGGCGACGTTCATGAGTCTGCAAGAAAGTTGGTGGGCAAGGTGGCGCTGATCACCGGCGGCGCGAGCGGCATCGGGGAGTGCACGGCGCGGCTGTTCGTGAAGCACGGGGCGCAAGTCGTGGTCGCCGACATCCAGGACGAGGCGGGGGCGCGACTGTGCGCCGAGCTCGGGAGCGCCACCGCCAGCTACGTGCGGTGCGACGTGACGAGCGAGGACGACGTCGCGGCCGCGGTGGACCACGCCGTGGCGAGGTACGGGAAGCTGGACGTCATGTTCAACAACGCCGGGATCGGCGGCGCGGCGTGCCACAGCATCCTGGAGAGCACCAAGGCCGACTTTGACCGCGTGCTGGCCGTGAACCTGACGGGCCCGTTCCTGGGCACGAAGCACGCGGCGCGGGTGATGGTGGCCGCGGGGCGCGGCGGGTGCATCATCGGGACGGCGAGCCTCGCGTCGGCGGTGGCCGGCACGGCGTCGCACGCGTACACGTGCGCCAAGCGCGCGCTGGTGGGGCTGACGGAGAACGCGGCGGCGGAGCTGGGCCGCCACGGGATCCGCGTCAACTGCGTGTCGCCCGCCGCGGCGGCGACGCCGCTGGCCACGGGGTACGTGGGCCTGGAGGGGGAGGCGTTCGAGGCCGCCATGGAGGCCGTGGCCAACCTCAAGGGCGTGCGCCTCCGCGTGGAGGACATCGCCGCCGCCGTGCTGTTCCTCGCCAGCGACGACGCGCGCTACGTCAGCGGCCACAACCTGCTCATCGACGGCGGCTGCTCCATCGTCAACCCGTCCTTTGGCATCTTCAAGGACTGAGACGATCGATCGGCTGGCCATGCATTGACAAAGATCGATCGACGCTGTCACGTTAGGCTTGTGTCACGATCGACGCTGTCACAGTTTATGTTTGACTTATGTTCTTAATTTTTTTAAAAAATAAATTTTAAAAGGATGGACGATTAAAATTGAACACGAAAATTTATATATACGTTTATTATGGGACGGGGAGAGTACTCCCCCCGTCCTAAAAAACCACCCTATTACTAGATATAACCCATCATAATATTAGGAATTAGGATATACATATATCCAGATTCATAGTATTAAAATATGTCATATTTAGTCCTAGATTCGTTTTTTATAGGATGGAAGGAATATTGTTTTTTTCAAGAAACGTGTACTTTTTCCGTCCTATAAAAACCAACCTAGTCCCGGATGTGACACATTTTATTTCTATGAATATAGACATACAT] [+] EMBL AK110700 [AGAGAGTCGCAGATCGAGAGAGCTAACGATTTCTCATCTCGCGGTGGCCATGGCGGGTAGCAGCTACGGCGACGTTCATGAGTCTGCAAGAAAGTTGGTGGGCAAGGTGGCGCTGATCACCGGCGGCGCGAGCGGCATCGGGGAGTGCACGGCGCGGCTGTTCGTGAAGCACGGGGCGCAAGTCGTGGTCGCCGACATCCAGGACGAGGCGGGGGCGCGACTGTGCGCCGAGCTCGGGAGCGCCACCGCCAGCTACGTGCGGTGCGACGTGACGAGCGAGGACGACGTCGCGGCCGCGGTGGACCACGCCGTGGCGAGGTACGGGAAGCTGGACGTCATGTTCAACAACGCCGGGATCGGCGGCGCGGCGTGCCACAGCATCCTGGAGAGCACCAAGGCCGACTTTGACCGCGTGCTGGCCGTGAACCTGACGGGCCCGTTCCTGGGCACGAAGCACGCGGCGCGGGTGATGGTGGCCGCGGGGCGCGGCGGGTGCATCATCGGGACGGCGAGCCTCGCGTCGGCGGTGGCCGGCACGGCGTCGCACGCGTACACGTGCGCCAAGCGCGCGCTGGTGGGGCTGACGGAGAACGCGGCGGCGGAGCTGGGCCGCCACGGGATCCGCGTCAACTGCGTGTCGCCCGCCGCGGCGGCGACGCCGCTGGCCACGGGGTACGTGGGCCTGGAGGGGGAGGCGTTCGAGGCCGCCATGGAGGCCGTGGCCAACCTCAAGGGCGTGCGCCTCCGCGTGGAGGACATCGCCGCCGCCGTGCTGTTCCTCGCCAGCGACGACGCGCGCTACGTCAGCGGCCACAACCTGCTCATCGACGGCGGCTGCTCCATCGTCAACCCGTCCTTTGGCATCTTCAAGGACTGAGACGATCGATCGGCTGGCCATGCATTGACAAAGATCGATCGACGCTGTCACGTTAGGCTTGTGTCACGATCGACGCTGTCACAGTTTATGTTTGACTTATGTTCTTAATTTTTTTAAAAAATAAATTTTAAAAGGATGGACGATTAAAATTGAACACGA ] [-] EMBL CB619632 [ AGGCCGTGGCCAACCTCAAGGGGGTGCGCCTCCGAGTGGAGGACATCGCCGCCGCCGTGCTGTTCCTCGCCAGGGACGACGCGGGTTACGTCAGGGGCCACAACCTGTTCATTGAGGGGGGGTGTTCCATCGTCAACCCGTCCTTTGGCATTTTCAAGGACTGAGACGATCGATCGGCTGGCCATGCATTGACAAAGATCGATCGACGCTGTCACGTTAGGCTTGTGTCACGATCGACGCTGTCCCAGTTTATGTTTGACTTAAGTTTTTAATTTTTTTAAAAAATAAA TTTAAAAGGATGGGGGATTAAAATTGAACCCGAAAATTTATATATACGTTTATTATGGGACGGGGAGAGTACTCCCCCCGTCCTAAAAAACCACCCTATTACTAGATATAACCCATCATAATATTAGGAATTAGGATATACATATATCCAGATTCATAGTATTAAAATATGTCATATTTAGTCCTAGATTCGTTTTTTATAGGATGGAAGGAATATTGTTTTTTTCAAGAAACGTGTACTTTTTCCGTCCTATAAAAACCAACCTAGTCCCGGATGTGACACATTTTATTTCTATGAATATAGACATACAT] consensusID : consensus_10183#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 963 fasta sequence [AGACAGCACAAAACATCGATCCAAAAGCACTTCTCGGACAGCAAATCGTCTCGATCCTGTTATTAGTATTCAGGCGCCATGGCAGCTGGAAGCTCCCATGTTTCTGCTGATGCAAGGAAGCTGGTGGGCAAGGTGGCGGTGATCACCGGCGGCGCGAGCGGCATCGGCGCGTGCACGGCGCGGCTGTTCGTGAAGCACGGCGCCCGCGTCGTGGTCGCCGACATCCAGGACGAGCTGGGAGCTAGCCTCGTCGCCGAGCTCGGCCCGGACGCGTCCAGCTACGTGCACTGCGACGTCACGAACGAGGGCGACGTCGCCGCCGCGGTCGACCACGCCGTCGCCAGGTTCGGGAAGCTCGACGTCATGTTCAACAACGCCGGCGTCAGTGGCCCGCCGTGCTTCAGGATGAGCGAGTGCACCAAGGAGGACTTCGAGCGCGTGCTCGCCGTGAACCTGGTCGGCCCGTTCCTGGGCACCAAGCACGCGGCGCGGGTGATGGCGCCGGCGCGCCGCGGCAGCATCATCTCGACGGCGAGCCTGTCGTCGTCGGTGTCCGGCGCGGCGTCGCACGCGTACACGACGTCGAAGCACGCGCTGGTGGGGTTCACGGAGAACGCGGCCGGCGAGCTGGGCCGGCACGGGATCCGCGTCAACTGCGTTTCGCCCGCCGGGGTCGCCACGCCGCTGGCGAGGGCTGCCATGGGCATGGACGACGAGGCAATCGAGGCGATCATGGCGAACTCGGCGAACCTGAAGGGCGCAGGCGCACTCAAGGCGGACGACATCGCCGCCGCGGCGCTGTTCCTCGCCAGCGACGACGGCCGGTACGTGAGCGGCCAGAACCTGCGCGTCGACGGCGGCTTGTCCGTCGTCAACAGCAGCTTTGGTTTCTTCAGGGACTGAAAATGATTTGGGACCAGTCGTCAGTCGATCGACAATACTACATTACGTCGTTATATATGG] [+] EMBL AK103462 [AGACAGCACAAAACATCGATCCAAAAGCACTTCTCGGACAGCAAATCGTCTCGATCCTGTTATTAGTATTCAGGCGCCATGGCAGCTGGAAGCTCCCATGTTTCTGCTGATGCAAGGAAGCTGGTGGGCAAGGTGGCGGTGATCACCGGCGGCGCGAGCGGCATCGGCGCGTGCACGGCGCGGCTGTTCGTGAAGCACGGCGCCCGCGTCGTGGTCGCCGACATCCAGGACGAGCTGGGAGCTAGCCTCGTCGCCGAGCTCGGCCCGGACGCGTCCAGCTACGTGCACTGCGACGTCACGAACGAGGGCGACGTCGCCGCCGCGGTCGACCACGCCGTCGCCAGGTTCGGGAAGCTCGACGTCATGTTCAACAACGCCGGCGTCAGTGGCCCGCCGTGCTTCAGGATGAGCGAGTGCACCAAGGAGGACTTCGAGCGCGTGCTCGCCGTGAACCTGGTCGGCCCGTTCCTGGGCACCAAGCACGCGGCGCGGGTGATGGCGCCGGCGCGCCGCGGCAGCATCATCTCGACGGCGAGCCTGTCGTCGTCGGTGTCCGGCGCGGCGTCGCACGCGTACACGACGTCGAAGCACGCGCTGGTGGGGTTCACGGAGAACGCGGCCGGCGAGCTGGGCCGGCACGGGATCCGCGTCAACTGCGTTTCGCCCGCCGGGGTCGCCACGCCGCTGGCGAGGGCTGCCATGGGCATGGACGACGAGGCAATCGAGGCGATCATGGCGAACTCGGCGAACCTGAAGGGCGCAGGCGCACTCAAGGCGGACGACATCGCCGCCGCGGCGCTGTTCCTCGCCAGCGACGACGGCCGGTACGTGAGCGGCCAGAACCTGCGCGTCGACGGCGGCTTGTCCGTCGTCAACAGCAGCTTTGGTTTCTTCAGGGACTGAAAATGATTTGGGACCAGTCGTCAGTCGATCGACAATACTACATTACGTCGTTATATATGG] [+] EMBL AK106087 [ ACAGCACAAAACATCGATCCAAAAGCACTTCTCGGACAGCAAATCGTCTCGATCCTGTTATTAGTATTCAGGCGCCATGGCAGCTGGAAGCTCCCATGTTTCTGCTGATGCAAGGAAGCTGGTGGGCAAGGTGGCGGTGATCACCGGCGGCGCGAGCGGCATCGGCGCGTGCACGGCGCGGCTGTTCGTGAAGCACGGCGCCCGCGTCGTGGTCGCCGACATCCAGGACGAGCTGGGAGCTAGCCTCGTCGCCGAGCTCGGCCCGGACGCGTCCAGCTACGTGCACTGCGACGTCACGAACGAGGGCGACGTCGCCGCCGCGGTCGACCACGCCGTCGCCAGGTTCGGGAAGCTCGACGTCATGTTCAACAACGCCGGCGTCAGTGGCCCGCCGTGCTTCAGGATGAGCGAGTGCACCAAGGAGGACTTCGAGCGCGTGCTCGCCGTGAACCTGGTCGGCCCGTTCCTGGGCACCAAGCACGCGGCGCGGGTGATGGCGCCGGCGCGCCGCGGCAGCATCATCTCGACGGCGAGCCTGTCGTCGTCGGTGTCCGGCGCGGCGTCGCACGCGTACACGACGTCGAAGCACGCGCTGGTGGGGTTCACGGAGAACGCGGCCGGCGAGCTGGGCCGGCACGGGATCCGCGTCAACTGCGTTTCGCCCGCCGGGGTCGCCACGCCGCTGGCGAGGGCTGCCATGGGCATGGACGACGAGGCAATCGAGGCGATCATGGCGAACTCGGCGAACCTGAAGGGCGCAGGCGCACTCAAGGCGGACGACATCGCCGCCGCGGCGCTGTTCCTCGCCAGCGACGACGGCCGGTACGTGAGCGGCCAGAACCTGCGCGTCGACGGCGGCTTGTCCGTCGTCAACAGCAGCTTTGGTTTCTTCAGGGACTGAAAATGATTTGGGACCAGTCGTCAGTCGATCGACAATACTACATTACGTCGTTATATATGG] [+] EMBL AK120852 [ GCACAAAACATCGATCCAAAAGCACTTCTCGGACAGCAAATCGTCTCGATCCTGTTATTAGTATTCAGGCGCCATGGCAGCTGGAAGCTCCCATGTTTCTGCTGATGCAAGGAAGCTGGTGGGCAAGGTGGCGGTGATCACCGGCGGCGCGAGCGGCATCGGCGCGTGCACGGCGCGGCTGTTCGTGAAGCACGGCGCCCGCGTCGTGGTCGCCGACATCCAGGACGAGCTGGGAGCTAGCCTCGTCGCCGAGCTCGGCCCGGACGCGTCCAGCTACGTGCACTGCGACGTCACGAACGAGGGCGACGTCGCCGCCGCGGTCGACCACGCCGTCGCCAGGTTCGGGAAGCTCGACGTCATGTTCAACAACGCCGGCGTCAGTGGCCCGCCGTGCTTCAGGATGAGCGAGTGCACCAAGGAGGACTTCGAGCGCGTGCTCGCCGTGAACCTGGTCGGCCCGTTCCTGGGCACCAAGCACGCGGCGCGGGTGATGGCGTCGGCGCGCCGCGGCAGCATCATCTCGACGGCGAGCCTGTCGTCGTCGGTGTCCGGCGCGGCGTCGCACGCGTACACGACGTCGAAGCACGCGCTGGTGGGGTTCACGGAGAACGCGGCCGGCGAGCTGGGCCGGCACGGGATCCGCGTCAACTGCGTTTCGCCCGCCGGGGTCGCCACGCCGCTGGCGAGGGCTGCCATGGGCATGGACGACGAGGCAATCGAGGCGATCATGGCGAACTCGGCGAACCTGAAGGGCGCAGGCGCACTCAAGGCGGACGACATCGCCGCCGCGGCGCTGTTCCTCGCCAGCGACGACGGCCGGTACGTGAGCGGCCAGAACCTGCGCGTCGACGGCGGCTTGTCCGTCGTCAACAGCAGCTTTGGTTTCTTCAGGGACTGAAAATGATTTGGGACCAGTCGTCAGTCGATCGACAATACTACATTACGTCGTTATATATGG] [+] EMBL C71973 [ ATCCAAAAGCACTTCTCGGACAGCAAATCGTCTCGNTCCTGTTATTAGTATTCAGGCGCCATGGCAGCTGGAAGCTCCCATGTTTCTGCTGATGCAAGGAAGCTGGTGGGCAAGGTGGCGGTGATCACCGGCGGCGCGA CGGCATCGGCGCGTGCACGGCGCGGCTGTTCGTNAAGCACGGCGCCCGCNTCGTGGTCGCCGACATCCAGGACGAGCTGGGAGCTAGCCTCGTCGCCGAGCTCGGCCCGGACGCGTCCAGCTACGTGCACTGCGACGTCACGAACGAGGGCGACGTCGCCGCCGCGGTCGACCACGCCGTCGCCAGGTTCGGGAAGTTCGACGTCATGTTCAACAACGCCGGCGT AATGGCCCGCCGTGCTTCAGGATNAGCGAGTTCACCA ] [+] EMBL AU101071 [ GCGTNAA TGCGTTTCGCCCGCCGGGGTCGCCAC CCGCTGGCGAGGGCTGCCATGGGCATGGACGACGAGGCAATCGAGGCGATCATGGCGAACTCGGCGAACCTGAAGGGCGCAGGCGCACTCAAGGCGGACGACATCGCCGCCGCGGCGCTGTTCCTCGCCAGCGACGACGGCCGGTACGTGAGCGGCCAGAACCTGCGCGTCGACGGCGGCTTGTCCGTCGTCAACAGCAGCTTTGGTTTCTTCAGGGACTGAAAATGATTTGGGACCAGTCGTCAGTCGATCGACAATACTACATTACGTCGTTATATATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10183#0 -------------------------AGAGAGTCGCAGATCGAGAGAGCTAACGAT----T 31 consensus_10183#1 AGACAGCACAAAACATCGATCCAAAAGCACTTCTCGGACAGCAAATCGTCTCGATCCTGT 60 ** ** * ** * * * **** * consensus_10183#0 TCTCATCTCGCGGTGGCCATGGCGGGTAGCAGCTACGGCGACGTTCATGAGTCTGCAAGA 91 consensus_10183#1 TATTAGTATTCAGGCGCCATGGCAGCTGGAAGCTCCC---ATGTTTCTGCTGATGCAAGG 117 * * * * * ******** * * * **** * * *** ** ****** consensus_10183#0 AAGTTGGTGGGCAAGGTGGCGCTGATCACCGGCGGCGCGAGCGGCATCGGGGAGTGCACG 151 consensus_10183#1 AAGCTGGTGGGCAAGGTGGCGGTGATCACCGGCGGCGCGAGCGGCATCGGCGCGTGCACG 177 *** ***************** **************************** * ******* consensus_10183#0 GCGCGGCTGTTCGTGAAGCACGGGGCGCAAGTCGTGGTCGCCGACATCCAGGACGAGGCG 211 consensus_10183#1 GCGCGGCTGTTCGTGAAGCACGGCGCCCGCGTCGTGGTCGCCGACATCCAGGACGAGCTG 237 *********************** ** * *************************** * consensus_10183#0 GGGGCGCGACTGTGCGCCGAGCTCGGGAGCGCCACCGCCAGCTACGTGCGGTGCGACGTG 271 consensus_10183#1 GGAGCTAGCCTCGTCGCCGAGCTCGGCCCGGACGCGTCCAGCTACGTGCACTGCGACGTC 297 ** ** * ** ************ * * * ************ ******** consensus_10183#0 ACGAGCGAGGACGACGTCGCGGCCGCGGTGGACCACGCCGTGGCGAGGTACGGGAAGCTG 331 consensus_10183#1 ACGAACGAGGGCGACGTCGCCGCCGCGGTCGACCACGCCGTCGCCAGGTTCGGGAAGCTC 357 **** ***** ********* ******** *********** ** **** ********* consensus_10183#0 GACGTCATGTTCAACAACGCCGGGATCGGCGGCGCGGCGTGCCACAGCATCCTGGAGAGC 391 consensus_10183#1 GACGTCATGTTCAACAACGCCGGCGTCAGTGGCCCGCCGTGCTTCAGGATGAGCGAGTGC 417 *********************** ** * *** ** ***** *** ** *** ** consensus_10183#0 ACCAAGGCCGACTTTGACCGCGTGCTGGCCGTGAACCTGACGGGCCCGTTCCTGGGCACG 451 consensus_10183#1 ACCAAGGAGGACTTCGAGCGCGTGCTCGCCGTGAACCTGGTCGGCCCGTTCCTGGGCACC 477 ******* ***** ** ******** ************ ***************** consensus_10183#0 AAGCACGCGGCGCGGGTGATGGTGGCCGCGGGGCGCGGCGGGTGCATCATCGGGACGGCG 511 consensus_10183#1 AAGCACGCGGCGCGGGTGATGGCGCCGGCGCGCCGCGGCAG---CATCATCTCGACGGCG 534 ********************** * * *** * ****** * ******* ******* consensus_10183#0 AGCCTCGCGTCGGCGGTGGCCGGCACGGCGTCGCACGCGTACACGTGCGCCAAGCGCGCG 571 consensus_10183#1 AGCCTGTCGTCGTCGGTGTCCGGCGCGGCGTCGCACGCGTACACGACGTCGAAGCACGCG 594 ***** ***** ***** ***** ******************** * **** **** consensus_10183#0 CTGGTGGGGCTGACGGAGAACGCGGCGGCGGAGCTGGGCCGCCACGGGATCCGCGTCAAC 631 consensus_10183#1 CTGGTGGGGTTCACGGAGAACGCGGCCGGCGAGCTGGGCCGGCACGGGATCCGCGTCAAC 654 ********* * ************** * *********** ****************** consensus_10183#0 TGCGTGTCGCCCGCCGCGGCGGCGACGCCGCTGGCCACGGGGTACGTGGGCCTGGAGGGG 691 consensus_10183#1 TGCGTTTCGCCCGCCGGGGTCGCCACGCCGCTGGCGAGGGCTGCCATGGGCATGGACGAC 714 ***** ********** ** ** *********** * ** * ***** **** * consensus_10183#0 GAGGCGTTCGAGGCCGCCATGGAGGCCGTGGCCAACCTCAAGGGCGTGCGC---CTCCGC 748 consensus_10183#1 GAGGCAATCGAGGCGATCATGGCGAACTCGGCGAACCTGAAGGGCGCAGGCGCACTCAAG 774 ***** ******* ***** * * *** ***** ******* ** *** consensus_10183#0 GTGGAGGACATCGCCGCCGCCGTGCTGTTCCTCGCCAGCGACGACGCGCGCTACGTCAGC 808 consensus_10183#1 GCGGACGACATCGCCGCCGCGGCGCTGTTCCTCGCCAGCGACGACGGCCGGTACGTGAGC 834 * *** ************** * *********************** ** ***** *** consensus_10183#0 GGCCACAACCTGCTCATCGACGGCGGCTGCTCCATCGTCAACCCGTCCTTTGGCATCTTC 868 consensus_10183#1 GGCCAGAACCTGCGCGTCGACGGCGGCTTGTCCGTCGTCAACAGCAGCTTTGGTTTCTTC 894 ***** ******* * ************ *** ******** ****** ***** consensus_10183#0 AAGGACTGAGA-CGATC---GATCGGCTGGCCATGCATTGACAAAGATCGATCGACGCTG 924 consensus_10183#1 AGGGACTGAAAATGATTTGGGACCAGTCGTCAGTCGATCGACAATACTACATT-ACGTCG 953 * ******* * *** ** * * * * * ** ***** * ** *** * consensus_10183#0 TCACGTTAGGCTTGTGTCACGATCGACGCTGTCACAGTTTATGTTTGACTTATGTTCTTA 984 consensus_10183#1 TTATATATGG-------------------------------------------------- 963 * * * ** consensus_10183#0 ATTTTTTTAAAAAATAAATTTTAAAAGGATGGACGATTAAAATTGAACACGAAAATTTAT 1044 consensus_10183#1 ------------------------------------------------------------ consensus_10183#0 ATATACGTTTATTATGGGACGGGGAGAGTACTCCCCCCGTCCTAAAAAACCACCCTATTA 1104 consensus_10183#1 ------------------------------------------------------------ consensus_10183#0 CTAGATATAACCCATCATAATATTAGGAATTAGGATATACATATATCCAGATTCATAGTA 1164 consensus_10183#1 ------------------------------------------------------------ consensus_10183#0 TTAAAATATGTCATATTTAGTCCTAGATTCGTTTTTTATAGGATGGAAGGAATATTGTTT 1224 consensus_10183#1 ------------------------------------------------------------ consensus_10183#0 TTTTCAAGAAACGTGTACTTTTTCCGTCCTATAAAAACCAACCTAGTCCCGGATGTGACA 1284 consensus_10183#1 ------------------------------------------------------------ consensus_10183#0 CATTTTATTTCTATGAATATAGACATACAT 1314 consensus_10183#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||