These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10195#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1816 fasta sequence [CGACGAATCCCCAGCGACATGAGCAACCATTGCGTCGGCGGCGGCGCCGCCGGAGTCGATGACTTGACGGACGACCTCATCGCCGAGATCCTCCTCCGCCTCCGGCCGTCCGAGCCGGCGTGCCTCGTCCGCGCCTCGGCCGTCTGCAAGCCCTGGCGCCGTCTCCTCACCGACCAGGCCTTCCTCCGCCGCTACCGCGATTTCCACGGCGCGCCTCCCCTGCTGGGGTTCCTCCACAACGTCGCCGGCGGCGGCGAAGACCGGTACGTCCCCTTCACCGCCTCCCCGGTCTCCCCGCCGGACATCGCGTGCCCTTGCTGGGTCGCCCTCGACTGCCGCCACGGCCGCGCCCTCCTCGACGAGTTCCCCTTCAGCGCCGACTTCACCGTGTGGCACCCCATGGCGGGACGACGGCGCCGGCTCCCCCGGCCGGACCTCCCCTACTTCATGTCCTACGCCGCCGCGGTGCTCTGCTCCGCCGTCGGATGTAACCACCTCGACTGCCGCGGCGGCGGCCCCTTCCTCGTCGTCGTCGTGGGCATCGACGAGCCGGAGCAGCAGAACTCGCGGCCGTGGGCGACCGTCTACTCGTCGGATTCCGATTCGTGGAGCCCAACGACCTCCGATTACCTCAACCTAACCCTAACCCCCAATTGCGACGTCGACAGGAAGCCCGCCGCCCTCGTCGGAGATGCGCTCCACTTCGCCCTTGCGGAAGGTTCTGGAATCATCAAGTACAACATGGGAGAGTGCTCGCTTTCTCGGATCCATCCACCTGTTGTGTACAAGGGAGGCATTGTGGTGATGGCAATGGGGGGCAATCTGCTCGGGCTCGGCGGCATCGAGGGTTCCATCCTCTCAATGTGGTCTAGTGATGTGAGCCTGGATGGTGGTGTCAGATGGGAGAAGAACAGGGTTATCAAGTTAGAGAGCTTGCTACCAAGTATCGATTGCGTAGAGGCAGTAGCATGTGAGCTTGCACAACCAGCACCGATTGGCTTTGTGGATGGTGCTGATATCGTTTTCGTTAGAACAGATGCTGGCATCTTCATGATTGAGCTCAAATCAATGTGTGTTAGGAAGGTTTGCGAGAGAGGATACTTCAAAGCCGTCTTCCCCTATACGAGCTTCTGCACTCCAGGCGTCCATCTCCAGCAAAACAGAGTTCAGTTCAGTAGGAAGCGGTTGCTGGAACTAAGAGAAGGCGATGTGGCAACAGGTATGCAATCCAACGGCAAGAGTCACAAGGGGCGACAGCCGTG-ACGGCCAAAGACCACCTA-CAAGGATGGTGCTGGCAATGGGCAGCGAGCTCTGCAGCATTTTGTTGTCTGCGTCAGAGTAAAAATGGCAGGGAAATGTTTGGACATGGGAGAGAGCCGATTGCTTCTTCCCATGTGAGTGAAAAATTTCATTTCAAATATGCACGGTTTGCTTGCATTTCAACTAAAATGTGAGGTACTTCCTCCGTTTCACAATGTAAGACTTTCTAGCATTACTCACATTCATTTAGATGTTAATGAATTTAGATGTTAACAATTAGCCCAAAAGCCTGGTACAAGGATTGAAAGCTGAAACTGAAAGGTGTGTAACTGTGTAACGATAAGCCTAGAAGTAAACATGAACCATAGCTCTGAAAGTCATGGCTTGGCACAAATGGATGGAGGGAAGAAACACGGTTGGTAAGGCTAAATAACTGCTTCCTTAGAATAACTGTTGGTAAGGCCAACCGTAAACAAAATACTATTGTTTTTTTTCCTCTCTGTATCTGAGAGAACTTAGAATTCTACATTTGTAGTATCATAAACCATCTTTTCAA] [+] EMBL AK070836 [CGACGAATCCCCAGCGACATGAGCAACCATTGCGTCGGCGGCGGCGCCGCCGGAGTCGATGACTTGACGGACGACCTCATCGCCGAGATCCTCCTCCGCCTCCGGCCGTCCGAGCCGGCGTGCCTCGTCCGCGCCTCGGCCGTCTGCAAGCCCTGGCGCCGTCTCCTCACCGACCAGGCCTTCCTCCGCCGCTACCGCGATTTCCACGGCGCGCCTCCCCTGCTGGGGTTCCTCCACAACGTCGCCGGCGGCGGCGAAGACCGGTACGTCCCCTTCACCGCCTCCCCGGTCTCCCCGCCGGACATCGCGTGCCCTTGCTGGGTCGCCCTCGACTGCCGCCACGGCCGCGCCCTCCTCGACGAGTTCCCCTTCAGCGCCGACTTCACCGTGTGGCACCCCATGGCGGGACGACGGCGCCGGCTCCCCCGGCCGGACCTCCCCTACTTCATGTCCTACGCCGCCGCGGTGCTCTGCTCCGCCGTCGGATGTAACCACCTCGACTGCCGCGGCGGCGGCCCCTTCCTCGTCGTCGTCGTGGGCATCGACGAGCCGGAGCAGCAGAACTCGCGGCCGTGGGCGACCGTCTACTCGTCGGATTCCGATTCGTGGAGCCCAACGACCTCCGATTACCTCAACCTAACCCTAACCCCCAATTGCGACGTCGACAGGAAGCCCGCCGCCCTCGTCGGAGATGCGCTCCACTTCGCCCTTGCGGAAGGTTCTGGAATCATCAAGTACAACATGGGAGAGTGCTCGCTTTCTCGGATCCATCCACCTGTTGTGTACAAGGGAGGCATTGTGGTGATGGCAATGGGGGGCAATCTGCTCGGGCTCGGCGGCATCGAGGGTTCCATCCTCTCAATGTGGTCTAGTGATGTGAGCCTGGATGGTGGTGTCAGATGGGAGAAGAACAGGGTTATCAAGTTAGAGAGCTTGCTACCAAGTATCGATTGCGTAGAGGCAGTAGCATGTGAGCTTGCACAACCAGCACCGATTGGCTTTGTGGATGGTGCTGATATCGTTTTCGTTAGAACAGATGCTGGCATCTTCATGATTGAGCTCAAATCAATGTGTGTTAGGAAGGTTTGCGAGAGAGGATACTTCAAAGCCGTCTTCCCCTATACGAGCTTCTGCACTCCAGGCGTCCATCTCCAGCAAAACAGAGTTCAGTTCAGTAGGAAGCGGTTGCTGGAACTAAGAGAAGGCGATGTGGCAACAGGTATGCAATCCAACGGCAAGAGTCACAAGGGGCGACAGCCGTG ACGGCCAAAGACCACCTA CAAGGATGGTGCTGGCAATGGGCAGCGAGCTCTGCAGCATTTTGTTGTCTGCGTCAGAGTAAAAATGGCAGGGAAATGTTTGGACATGGGAGAGAGCCGATTGCTTCTTCCCATGTGAGTGAAAAATTTCATTTCAAATATGCACGGTTTGCTTGCATTTCAACTAAAATGTGAGGTACTTCCTCCGTTTCACAATGTAAGACTTTCTAGCATTACTCACATTCATTTAGATGTTAATGAATTTAGATGTTAACAATTAGCCCAAAAGCCTGGTACAAGGATTGAAAGCTGAAACTGAAAGGTGTGTAACTGTGTAACGATAAGCCTAGAAGTAAACATGAACCATAGCTCTGAAAGTCATGGCTTGGCACAAATGGATGGAGGGAAGAAACACGGTTGGTAAGGCTAAATAACTGCTTCCTTAGAATAACTGTTGGTAAGGCCAACCGTAAACAAAATACTATTGTTTTTTTTCCTCTCTGTATCTGAGAGAACTTAGAATTCTACATTTGTAGTATCATAAACCATCTTTTCAA] [+] EMBL OS0615A [ TTATCAAGTTAGAGAGCTTGCTACCAAGTATCGATTGCGTAGAGGCAGTAGCATGTGAGCTTGCACAACCAGNACCGATTGGCTTTGTGGATGGNGCTGATATCGTTTTCGTTAGAACAGNTGCTGGCATCTTCATGATTGAGCTCAAATCAATGTGTGTTAGGAAGGTTTGCGAGAGAGGATACTTCAAAGCCGTCTTCCCCTATACGAGCTTCTGCACTCCAGGCGTCCATCTCCAGCAAAACAGAGTTCAGTTCAGTAGGAAGCGGTTGCNGGAACTAAGAGAAGGCGATGTGGCAACAGGTATGCAATCCAA ] [+] EMBL BM418535 [ GCGTAGAGGCAGTAGCATGTGAGCTTGCACAACCAGCACCGATTGGCTTTGTGGATGGTGCTGATATCGTTTTCGTTAGAACAGATGCTGGCATCTTCATGATTGAGCTCAAATC ATGTGTGTTAGGAAGGTTTGCGAGAGAGGATACTTCAAAGCCGTCTTCCCCTATACGAGCTTCTGCACTCCAGGCGTCCATCTCCAGCAAAACAGAGTTCAGTTCAGTAGGAAGCGGTTGCTGGAACTAAGAGAAGGCGATGTGGCAACAGGTATGCAATCCAACGGCAAGAGCCACAAGGGGCGACAGCCGTGTACGNCC AAGACCACCTACCAAGGATGGTGCTGGCAATGGGCAGCGAGCTCTGCAGCATTTTGTTGTCTGCGTCAGAGTAAAAATGGCAGGGAAATGTTTGGACATGGGAGAGAGCCGATTGCTTCTTCCCATGTGAGTGAAAAATTTCATTTCAAATATGCACGGTTTGCTTGCATTTCAAAAAAAAa ] [+] EMBL CB096702 [ GTG ACGGCCAAAGACCACCTA CAAGGATGGTGCTGGCAATGGGCAGCGAGCTCTGCAGCATTTTGTTGTCTGCGTCAGAGTAAAAATGGCAGGGAAATGTTTGGACATGGGAGAGAGCCGATTGCTTCTTCCCATGTGAGTGAAAAATTTCATTTCAAATATGCACGGTTTGCTTGCATTTCAACTAAAATGTGAGGTACTTCCTCCGTTTCACAATGTAAGACTTTCTAGCATTACTCACATTCATTTAGATGTTAATGAATTTAGATGTTAACAATTAGCCCAAAAGCCTGGTACAAG ] consensusID : consensus_10195#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 282 fasta sequence [CGTACAAGGATGTTGCTGGCNATGGGCAGCGAGCTCTGCAGCATTTTGTTGTCTGCGTCAGNGTAAAAATGGCNGGGAAATGTTTGGACATGGGAGAGAGCCGATTGCTTCTTCCCATGTGNGTGAAAAATTTCATTTCAAATATGCACGGTTTGCTTGCATTTCAACTAAAATGTGAGGTACTTCCTCCGTTTCACAATGTAAGACTTTCTAGCATTACTCACATTCATTTAGATGTTAATGAATTTAGNTGTTNNGNATTAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU075771 [CGTACAAGGATGTTGCTGGCNATGGGCNGCGAGCTCTGCNGCATTTTGTTGTCTGCGTCAGNGTAAAAATGGCNGGGAAATGTTTGGNCATGGGNGAGAGCCGATTGCTTCTTCCCATGTGNGTGAAAAATTTCATTTCAAATATGCNCGGTTTGCTTGCATTTCAACTAAAATGTGAGGTACTTCCTCCGTTTCACAATGTAAGACTTTCTAGCATTACTCACATTCATTTAGATGTTNATGAATTTNNNTGTTNNGNNTTAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU058356 [ GTTGCTGGCAATGGGCAGCGAGCTCTGCAGCATTTTGTTGTCTGCGTCAGAGTAAAAATGGCAGGGAAATGTTTGGACATGGGAGAGAGCCGATTGCTTCTTCCCATGTGAGTGAAAAATTTCATTTCAAATATGCACGGTTTGCTTGCATTTCAACTAAAATGTGAGGTACTTCCTCCGTTTCACAATGTAAGACTTTCTAGCATTACTCACATTCATTTAGATGTTAATGAATTTAGATGTTAACAATTAAAAAAAAAAAAAAnna ] [+] EMBL C98088 [ TGGGCAGCGAGCTCTGCAGCATTTTGTTGTCTGCGTCAGNGTAAAAATGGCCGGGAAATGTTTGGACATGGGAGAGAGCCGATTGCTTCTTCCCATGTGNGTGAAAAATTTCATTTCAAATATGCACGGTTTGCTTGCATTTCAACTAAAATGTGAGGTACTTCCTCCGTTTCACAATGTAAGACTTTCTAGCNTTACTNACATTCATTTAGATGTTAATGAATTTAGNTGTTNNTNATTAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10195#0 CGACGAATCCCCAGCGACATGAGCAACCATTGCGTCGGCGGCGGCGCCGCCGGAGTCGAT 60 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 GACTTGACGGACGACCTCATCGCCGAGATCCTCCTCCGCCTCCGGCCGTCCGAGCCGGCG 120 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 TGCCTCGTCCGCGCCTCGGCCGTCTGCAAGCCCTGGCGCCGTCTCCTCACCGACCAGGCC 180 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 TTCCTCCGCCGCTACCGCGATTTCCACGGCGCGCCTCCCCTGCTGGGGTTCCTCCACAAC 240 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 GTCGCCGGCGGCGGCGAAGACCGGTACGTCCCCTTCACCGCCTCCCCGGTCTCCCCGCCG 300 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 GACATCGCGTGCCCTTGCTGGGTCGCCCTCGACTGCCGCCACGGCCGCGCCCTCCTCGAC 360 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 GAGTTCCCCTTCAGCGCCGACTTCACCGTGTGGCACCCCATGGCGGGACGACGGCGCCGG 420 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 CTCCCCCGGCCGGACCTCCCCTACTTCATGTCCTACGCCGCCGCGGTGCTCTGCTCCGCC 480 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 GTCGGATGTAACCACCTCGACTGCCGCGGCGGCGGCCCCTTCCTCGTCGTCGTCGTGGGC 540 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 ATCGACGAGCCGGAGCAGCAGAACTCGCGGCCGTGGGCGACCGTCTACTCGTCGGATTCC 600 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 GATTCGTGGAGCCCAACGACCTCCGATTACCTCAACCTAACCCTAACCCCCAATTGCGAC 660 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 GTCGACAGGAAGCCCGCCGCCCTCGTCGGAGATGCGCTCCACTTCGCCCTTGCGGAAGGT 720 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 TCTGGAATCATCAAGTACAACATGGGAGAGTGCTCGCTTTCTCGGATCCATCCACCTGTT 780 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 GTGTACAAGGGAGGCATTGTGGTGATGGCAATGGGGGGCAATCTGCTCGGGCTCGGCGGC 840 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 ATCGAGGGTTCCATCCTCTCAATGTGGTCTAGTGATGTGAGCCTGGATGGTGGTGTCAGA 900 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 TGGGAGAAGAACAGGGTTATCAAGTTAGAGAGCTTGCTACCAAGTATCGATTGCGTAGAG 960 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 GCAGTAGCATGTGAGCTTGCACAACCAGCACCGATTGGCTTTGTGGATGGTGCTGATATC 1020 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 GTTTTCGTTAGAACAGATGCTGGCATCTTCATGATTGAGCTCAAATCAATGTGTGTTAGG 1080 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 AAGGTTTGCGAGAGAGGATACTTCAAAGCCGTCTTCCCCTATACGAGCTTCTGCACTCCA 1140 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 GGCGTCCATCTCCAGCAAAACAGAGTTCAGTTCAGTAGGAAGCGGTTGCTGGAACTAAGA 1200 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 GAAGGCGATGTGGCAACAGGTATGCAATCCAACGGCAAGAGTCACAAGGGGCGACAGCCG 1260 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 TGACGGCCAAAGACCACCTACAAGGATGGTGCTGGCAATGGGCAGCGAGCTCTGCAGCAT 1320 consensus_10195#1 ----------------CGTACAAGGATGTTGCTGGCNATGGGCAGCGAGCTCTGCAGCAT 44 * ********** ******* *********************** consensus_10195#0 TTTGTTGTCTGCGTCAGAGTAAAAATGGCAGGGAAATGTTTGGACATGGGAGAGAGCCGA 1380 consensus_10195#1 TTTGTTGTCTGCGTCAGNGTAAAAATGGCNGGGAAATGTTTGGACATGGGAGAGAGCCGA 104 ***************** *********** ****************************** consensus_10195#0 TTGCTTCTTCCCATGTGAGTGAAAAATTTCATTTCAAATATGCACGGTTTGCTTGCATTT 1440 consensus_10195#1 TTGCTTCTTCCCATGTGNGTGAAAAATTTCATTTCAAATATGCACGGTTTGCTTGCATTT 164 ***************** ****************************************** consensus_10195#0 CAACTAAAATGTGAGGTACTTCCTCCGTTTCACAATGTAAGACTTTCTAGCATTACTCAC 1500 consensus_10195#1 CAACTAAAATGTGAGGTACTTCCTCCGTTTCACAATGTAAGACTTTCTAGCATTACTCAC 224 ************************************************************ consensus_10195#0 ATTCATTTAGATGTTAATGAATTTAGATGTTAACAATTAGCCCAAAAGCCTGGTACAAGG 1560 consensus_10195#1 ATTCATTTAGATGTTAATGAATTTAGNTGTTNNGNATTAAAAAAAAAAAAAAAAAAAA-- 282 ************************** **** **** **** * ** consensus_10195#0 ATTGAAAGCTGAAACTGAAAGGTGTGTAACTGTGTAACGATAAGCCTAGAAGTAAACATG 1620 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 AACCATAGCTCTGAAAGTCATGGCTTGGCACAAATGGATGGAGGGAAGAAACACGGTTGG 1680 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 TAAGGCTAAATAACTGCTTCCTTAGAATAACTGTTGGTAAGGCCAACCGTAAACAAAATA 1740 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 CTATTGTTTTTTTTCCTCTCTGTATCTGAGAGAACTTAGAATTCTACATTTGTAGTATCA 1800 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 TAAACCATCTTTTCAA 1816 consensus_10195#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||