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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10195#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1816 fasta sequence
[CGACGAATCCCCAGCGACATGAGCAACCATTGCGTCGGCGGCGGCGCCGCCGGAGTCGATGACTTGACGGACGACCTCATCGCCGAGATCCTCCTCCGCCTCCGGCCGTCCGAGCCGGCGTGCCTCGTCCGCGCCTCGGCCGTCTGCAAGCCCTGGCGCCGTCTCCTCACCGACCAGGCCTTCCTCCGCCGCTACCGCGATTTCCACGGCGCGCCTCCCCTGCTGGGGTTCCTCCACAACGTCGCCGGCGGCGGCGAAGACCGGTACGTCCCCTTCACCGCCTCCCCGGTCTCCCCGCCGGACATCGCGTGCCCTTGCTGGGTCGCCCTCGACTGCCGCCACGGCCGCGCCCTCCTCGACGAGTTCCCCTTCAGCGCCGACTTCACCGTGTGGCACCCCATGGCGGGACGACGGCGCCGGCTCCCCCGGCCGGACCTCCCCTACTTCATGTCCTACGCCGCCGCGGTGCTCTGCTCCGCCGTCGGATGTAACCACCTCGACTGCCGCGGCGGCGGCCCCTTCCTCGTCGTCGTCGTGGGCATCGACGAGCCGGAGCAGCAGAACTCGCGGCCGTGGGCGACCGTCTACTCGTCGGATTCCGATTCGTGGAGCCCAACGACCTCCGATTACCTCAACCTAACCCTAACCCCCAATTGCGACGTCGACAGGAAGCCCGCCGCCCTCGTCGGAGATGCGCTCCACTTCGCCCTTGCGGAAGGTTCTGGAATCATCAAGTACAACATGGGAGAGTGCTCGCTTTCTCGGATCCATCCACCTGTTGTGTACAAGGGAGGCATTGTGGTGATGGCAATGGGGGGCAATCTGCTCGGGCTCGGCGGCATCGAGGGTTCCATCCTCTCAATGTGGTCTAGTGATGTGAGCCTGGATGGTGGTGTCAGATGGGAGAAGAACAGGGTTATCAAGTTAGAGAGCTTGCTACCAAGTATCGATTGCGTAGAGGCAGTAGCATGTGAGCTTGCACAACCAGCACCGATTGGCTTTGTGGATGGTGCTGATATCGTTTTCGTTAGAACAGATGCTGGCATCTTCATGATTGAGCTCAAATCAATGTGTGTTAGGAAGGTTTGCGAGAGAGGATACTTCAAAGCCGTCTTCCCCTATACGAGCTTCTGCACTCCAGGCGTCCATCTCCAGCAAAACAGAGTTCAGTTCAGTAGGAAGCGGTTGCTGGAACTAAGAGAAGGCGATGTGGCAACAGGTATGCAATCCAACGGCAAGAGTCACAAGGGGCGACAGCCGTG-ACGGCCAAAGACCACCTA-CAAGGATGGTGCTGGCAATGGGCAGCGAGCTCTGCAGCATTTTGTTGTCTGCGTCAGAGTAAAAATGGCAGGGAAATGTTTGGACATGGGAGAGAGCCGATTGCTTCTTCCCATGTGAGTGAAAAATTTCATTTCAAATATGCACGGTTTGCTTGCATTTCAACTAAAATGTGAGGTACTTCCTCCGTTTCACAATGTAAGACTTTCTAGCATTACTCACATTCATTTAGATGTTAATGAATTTAGATGTTAACAATTAGCCCAAAAGCCTGGTACAAGGATTGAAAGCTGAAACTGAAAGGTGTGTAACTGTGTAACGATAAGCCTAGAAGTAAACATGAACCATAGCTCTGAAAGTCATGGCTTGGCACAAATGGATGGAGGGAAGAAACACGGTTGGTAAGGCTAAATAACTGCTTCCTTAGAATAACTGTTGGTAAGGCCAACCGTAAACAAAATACTATTGTTTTTTTTCCTCTCTGTATCTGAGAGAACTTAGAATTCTACATTTGTAGTATCATAAACCATCTTTTCAA]
[+] EMBL AK070836 [CGACGAATCCCCAGCGACATGAGCAACCATTGCGTCGGCGGCGGCGCCGCCGGAGTCGATGACTTGACGGACGACCTCATCGCCGAGATCCTCCTCCGCCTCCGGCCGTCCGAGCCGGCGTGCCTCGTCCGCGCCTCGGCCGTCTGCAAGCCCTGGCGCCGTCTCCTCACCGACCAGGCCTTCCTCCGCCGCTACCGCGATTTCCACGGCGCGCCTCCCCTGCTGGGGTTCCTCCACAACGTCGCCGGCGGCGGCGAAGACCGGTACGTCCCCTTCACCGCCTCCCCGGTCTCCCCGCCGGACATCGCGTGCCCTTGCTGGGTCGCCCTCGACTGCCGCCACGGCCGCGCCCTCCTCGACGAGTTCCCCTTCAGCGCCGACTTCACCGTGTGGCACCCCATGGCGGGACGACGGCGCCGGCTCCCCCGGCCGGACCTCCCCTACTTCATGTCCTACGCCGCCGCGGTGCTCTGCTCCGCCGTCGGATGTAACCACCTCGACTGCCGCGGCGGCGGCCCCTTCCTCGTCGTCGTCGTGGGCATCGACGAGCCGGAGCAGCAGAACTCGCGGCCGTGGGCGACCGTCTACTCGTCGGATTCCGATTCGTGGAGCCCAACGACCTCCGATTACCTCAACCTAACCCTAACCCCCAATTGCGACGTCGACAGGAAGCCCGCCGCCCTCGTCGGAGATGCGCTCCACTTCGCCCTTGCGGAAGGTTCTGGAATCATCAAGTACAACATGGGAGAGTGCTCGCTTTCTCGGATCCATCCACCTGTTGTGTACAAGGGAGGCATTGTGGTGATGGCAATGGGGGGCAATCTGCTCGGGCTCGGCGGCATCGAGGGTTCCATCCTCTCAATGTGGTCTAGTGATGTGAGCCTGGATGGTGGTGTCAGATGGGAGAAGAACAGGGTTATCAAGTTAGAGAGCTTGCTACCAAGTATCGATTGCGTAGAGGCAGTAGCATGTGAGCTTGCACAACCAGCACCGATTGGCTTTGTGGATGGTGCTGATATCGTTTTCGTTAGAACAGATGCTGGCATCTTCATGATTGAGCTCAAATCAATGTGTGTTAGGAAGGTTTGCGAGAGAGGATACTTCAAAGCCGTCTTCCCCTATACGAGCTTCTGCACTCCAGGCGTCCATCTCCAGCAAAACAGAGTTCAGTTCAGTAGGAAGCGGTTGCTGGAACTAAGAGAAGGCGATGTGGCAACAGGTATGCAATCCAACGGCAAGAGTCACAAGGGGCGACAGCCGTG ACGGCCAAAGACCACCTA CAAGGATGGTGCTGGCAATGGGCAGCGAGCTCTGCAGCATTTTGTTGTCTGCGTCAGAGTAAAAATGGCAGGGAAATGTTTGGACATGGGAGAGAGCCGATTGCTTCTTCCCATGTGAGTGAAAAATTTCATTTCAAATATGCACGGTTTGCTTGCATTTCAACTAAAATGTGAGGTACTTCCTCCGTTTCACAATGTAAGACTTTCTAGCATTACTCACATTCATTTAGATGTTAATGAATTTAGATGTTAACAATTAGCCCAAAAGCCTGGTACAAGGATTGAAAGCTGAAACTGAAAGGTGTGTAACTGTGTAACGATAAGCCTAGAAGTAAACATGAACCATAGCTCTGAAAGTCATGGCTTGGCACAAATGGATGGAGGGAAGAAACACGGTTGGTAAGGCTAAATAACTGCTTCCTTAGAATAACTGTTGGTAAGGCCAACCGTAAACAAAATACTATTGTTTTTTTTCCTCTCTGTATCTGAGAGAACTTAGAATTCTACATTTGTAGTATCATAAACCATCTTTTCAA]
[+] EMBL OS0615A [ TTATCAAGTTAGAGAGCTTGCTACCAAGTATCGATTGCGTAGAGGCAGTAGCATGTGAGCTTGCACAACCAGNACCGATTGGCTTTGTGGATGGNGCTGATATCGTTTTCGTTAGAACAGNTGCTGGCATCTTCATGATTGAGCTCAAATCAATGTGTGTTAGGAAGGTTTGCGAGAGAGGATACTTCAAAGCCGTCTTCCCCTATACGAGCTTCTGCACTCCAGGCGTCCATCTCCAGCAAAACAGAGTTCAGTTCAGTAGGAAGCGGTTGCNGGAACTAAGAGAAGGCGATGTGGCAACAGGTATGCAATCCAA ]
[+] EMBL BM418535 [ GCGTAGAGGCAGTAGCATGTGAGCTTGCACAACCAGCACCGATTGGCTTTGTGGATGGTGCTGATATCGTTTTCGTTAGAACAGATGCTGGCATCTTCATGATTGAGCTCAAATC ATGTGTGTTAGGAAGGTTTGCGAGAGAGGATACTTCAAAGCCGTCTTCCCCTATACGAGCTTCTGCACTCCAGGCGTCCATCTCCAGCAAAACAGAGTTCAGTTCAGTAGGAAGCGGTTGCTGGAACTAAGAGAAGGCGATGTGGCAACAGGTATGCAATCCAACGGCAAGAGCCACAAGGGGCGACAGCCGTGTACGNCC AAGACCACCTACCAAGGATGGTGCTGGCAATGGGCAGCGAGCTCTGCAGCATTTTGTTGTCTGCGTCAGAGTAAAAATGGCAGGGAAATGTTTGGACATGGGAGAGAGCCGATTGCTTCTTCCCATGTGAGTGAAAAATTTCATTTCAAATATGCACGGTTTGCTTGCATTTCAAAAAAAAa ]
[+] EMBL CB096702 [ GTG ACGGCCAAAGACCACCTA CAAGGATGGTGCTGGCAATGGGCAGCGAGCTCTGCAGCATTTTGTTGTCTGCGTCAGAGTAAAAATGGCAGGGAAATGTTTGGACATGGGAGAGAGCCGATTGCTTCTTCCCATGTGAGTGAAAAATTTCATTTCAAATATGCACGGTTTGCTTGCATTTCAACTAAAATGTGAGGTACTTCCTCCGTTTCACAATGTAAGACTTTCTAGCATTACTCACATTCATTTAGATGTTAATGAATTTAGATGTTAACAATTAGCCCAAAAGCCTGGTACAAG ]
consensusID : consensus_10195#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 282 fasta sequence
[CGTACAAGGATGTTGCTGGCNATGGGCAGCGAGCTCTGCAGCATTTTGTTGTCTGCGTCAGNGTAAAAATGGCNGGGAAATGTTTGGACATGGGAGAGAGCCGATTGCTTCTTCCCATGTGNGTGAAAAATTTCATTTCAAATATGCACGGTTTGCTTGCATTTCAACTAAAATGTGAGGTACTTCCTCCGTTTCACAATGTAAGACTTTCTAGCATTACTCACATTCATTTAGATGTTAATGAATTTAGNTGTTNNGNATTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU075771 [CGTACAAGGATGTTGCTGGCNATGGGCNGCGAGCTCTGCNGCATTTTGTTGTCTGCGTCAGNGTAAAAATGGCNGGGAAATGTTTGGNCATGGGNGAGAGCCGATTGCTTCTTCCCATGTGNGTGAAAAATTTCATTTCAAATATGCNCGGTTTGCTTGCATTTCAACTAAAATGTGAGGTACTTCCTCCGTTTCACAATGTAAGACTTTCTAGCATTACTCACATTCATTTAGATGTTNATGAATTTNNNTGTTNNGNNTTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU058356 [ GTTGCTGGCAATGGGCAGCGAGCTCTGCAGCATTTTGTTGTCTGCGTCAGAGTAAAAATGGCAGGGAAATGTTTGGACATGGGAGAGAGCCGATTGCTTCTTCCCATGTGAGTGAAAAATTTCATTTCAAATATGCACGGTTTGCTTGCATTTCAACTAAAATGTGAGGTACTTCCTCCGTTTCACAATGTAAGACTTTCTAGCATTACTCACATTCATTTAGATGTTAATGAATTTAGATGTTAACAATTAAAAAAAAAAAAAAnna ]
[+] EMBL C98088 [ TGGGCAGCGAGCTCTGCAGCATTTTGTTGTCTGCGTCAGNGTAAAAATGGCCGGGAAATGTTTGGACATGGGAGAGAGCCGATTGCTTCTTCCCATGTGNGTGAAAAATTTCATTTCAAATATGCACGGTTTGCTTGCATTTCAACTAAAATGTGAGGTACTTCCTCCGTTTCACAATGTAAGACTTTCTAGCNTTACTNACATTCATTTAGATGTTAATGAATTTAGNTGTTNNTNATTAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10195#0 CGACGAATCCCCAGCGACATGAGCAACCATTGCGTCGGCGGCGGCGCCGCCGGAGTCGAT 60
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 GACTTGACGGACGACCTCATCGCCGAGATCCTCCTCCGCCTCCGGCCGTCCGAGCCGGCG 120
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 TGCCTCGTCCGCGCCTCGGCCGTCTGCAAGCCCTGGCGCCGTCTCCTCACCGACCAGGCC 180
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 TTCCTCCGCCGCTACCGCGATTTCCACGGCGCGCCTCCCCTGCTGGGGTTCCTCCACAAC 240
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 GTCGCCGGCGGCGGCGAAGACCGGTACGTCCCCTTCACCGCCTCCCCGGTCTCCCCGCCG 300
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 GACATCGCGTGCCCTTGCTGGGTCGCCCTCGACTGCCGCCACGGCCGCGCCCTCCTCGAC 360
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 GAGTTCCCCTTCAGCGCCGACTTCACCGTGTGGCACCCCATGGCGGGACGACGGCGCCGG 420
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 CTCCCCCGGCCGGACCTCCCCTACTTCATGTCCTACGCCGCCGCGGTGCTCTGCTCCGCC 480
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 GTCGGATGTAACCACCTCGACTGCCGCGGCGGCGGCCCCTTCCTCGTCGTCGTCGTGGGC 540
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 ATCGACGAGCCGGAGCAGCAGAACTCGCGGCCGTGGGCGACCGTCTACTCGTCGGATTCC 600
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 GATTCGTGGAGCCCAACGACCTCCGATTACCTCAACCTAACCCTAACCCCCAATTGCGAC 660
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 GTCGACAGGAAGCCCGCCGCCCTCGTCGGAGATGCGCTCCACTTCGCCCTTGCGGAAGGT 720
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 TCTGGAATCATCAAGTACAACATGGGAGAGTGCTCGCTTTCTCGGATCCATCCACCTGTT 780
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 GTGTACAAGGGAGGCATTGTGGTGATGGCAATGGGGGGCAATCTGCTCGGGCTCGGCGGC 840
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 ATCGAGGGTTCCATCCTCTCAATGTGGTCTAGTGATGTGAGCCTGGATGGTGGTGTCAGA 900
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 TGGGAGAAGAACAGGGTTATCAAGTTAGAGAGCTTGCTACCAAGTATCGATTGCGTAGAG 960
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 GCAGTAGCATGTGAGCTTGCACAACCAGCACCGATTGGCTTTGTGGATGGTGCTGATATC 1020
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 GTTTTCGTTAGAACAGATGCTGGCATCTTCATGATTGAGCTCAAATCAATGTGTGTTAGG 1080
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 AAGGTTTGCGAGAGAGGATACTTCAAAGCCGTCTTCCCCTATACGAGCTTCTGCACTCCA 1140
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 GGCGTCCATCTCCAGCAAAACAGAGTTCAGTTCAGTAGGAAGCGGTTGCTGGAACTAAGA 1200
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 GAAGGCGATGTGGCAACAGGTATGCAATCCAACGGCAAGAGTCACAAGGGGCGACAGCCG 1260
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 TGACGGCCAAAGACCACCTACAAGGATGGTGCTGGCAATGGGCAGCGAGCTCTGCAGCAT 1320
consensus_10195#1 ----------------CGTACAAGGATGTTGCTGGCNATGGGCAGCGAGCTCTGCAGCAT 44
* ********** ******* ***********************
consensus_10195#0 TTTGTTGTCTGCGTCAGAGTAAAAATGGCAGGGAAATGTTTGGACATGGGAGAGAGCCGA 1380
consensus_10195#1 TTTGTTGTCTGCGTCAGNGTAAAAATGGCNGGGAAATGTTTGGACATGGGAGAGAGCCGA 104
***************** *********** ******************************
consensus_10195#0 TTGCTTCTTCCCATGTGAGTGAAAAATTTCATTTCAAATATGCACGGTTTGCTTGCATTT 1440
consensus_10195#1 TTGCTTCTTCCCATGTGNGTGAAAAATTTCATTTCAAATATGCACGGTTTGCTTGCATTT 164
***************** ******************************************
consensus_10195#0 CAACTAAAATGTGAGGTACTTCCTCCGTTTCACAATGTAAGACTTTCTAGCATTACTCAC 1500
consensus_10195#1 CAACTAAAATGTGAGGTACTTCCTCCGTTTCACAATGTAAGACTTTCTAGCATTACTCAC 224
************************************************************
consensus_10195#0 ATTCATTTAGATGTTAATGAATTTAGATGTTAACAATTAGCCCAAAAGCCTGGTACAAGG 1560
consensus_10195#1 ATTCATTTAGATGTTAATGAATTTAGNTGTTNNGNATTAAAAAAAAAAAAAAAAAAAA-- 282
************************** **** **** **** * **
consensus_10195#0 ATTGAAAGCTGAAACTGAAAGGTGTGTAACTGTGTAACGATAAGCCTAGAAGTAAACATG 1620
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 AACCATAGCTCTGAAAGTCATGGCTTGGCACAAATGGATGGAGGGAAGAAACACGGTTGG 1680
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 TAAGGCTAAATAACTGCTTCCTTAGAATAACTGTTGGTAAGGCCAACCGTAAACAAAATA 1740
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 CTATTGTTTTTTTTCCTCTCTGTATCTGAGAGAACTTAGAATTCTACATTTGTAGTATCA 1800
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 TAAACCATCTTTTCAA 1816
consensus_10195#1 ----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||