cluster # 10201

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Oryza sativa
cluster # 10201 cluster # 10201 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10201#0 length = 689 sequences # 6

consensus_10201#1 length = 381 sequences # 1

consensusID : consensus_10201#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 689
fasta sequence

                              [CCCAGCTTGGATGTGTGCTTACAGAAGTCATCAGTGACAAAATGGAGAAGCGATGTTCCATTCTTGCACTACTTGGCTTAGTACTGCTGTTCTCCAACGTTATTGCTGAGGGAGCAGGCCTGAACAAAGCGATCTTTTCTCGCAAAGGTCTGAAAGAAGAACGCAAACTAGCTGTCACTGGAACAGCCTCATCCCTTGGCGGTTTACAAGGGCAATCGTCAAGCACCGGTGTTGGAGGTGTTAGCAGCAACAATGCTGAAAGTACAAATTCTGAAACTGGAGACTCTTCGTCAGCCTACACACCGATGAGTACTGCCACCACCACAGACTCCCACCATGACATGTCCATGGATCAGTATCGGAAGATCATCCACAACAGCCAGAT-GAACAAACCGTAATGACCATGGATTGTCCCGAAGGAC-GTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGTTATGCAACGAAGTATAACAAGAGTCTTTTAATTAATGTATATATATAAACTCGGGTATTATTATATGCTGGACTTGGCTTGTATAAATCTACCTGGTGCCTTCGGCTATATAAACAAATATTTATGCATGTGTTTCGCATGCATAGTAATGTATGCGCTAGATTATGTGTCGAATAAATCAGATGGGAGATGCCCATGGTTTATGGTTAATAGCCAAAGCA]

[+] EMBL AK121226             [CCCAGCTTGGATGTGTGCTTACAGAAGTCATCAGTGACAAAATGGAGAAGCGATGTTCCATTCTTGCACTACTTGGCTTAGTACTGCTGTTCTCCAACGTTATTGCTGAGGGAGCAGGCCTGAACAAAGCGATCTTTTCTCGCAAAGGTCTGAAAGAAGAACGCAAACTAGCTGTCACTGGAACAGCCTCATCCCTTGGCGGTTTACAAGGGCAATCGTCAAGCACCGGTGTTGGAGGTGTTAGCAGCAACAATGCTGAAAGTACAAATTCTGAAACTGGAGACTCTTCGTCAGCCTACACACCGATGAGTACTGCCACCACCACAGACTCCCACCATGACATGTCCATGGATCAGTATCGGAAGATCATCCACAACAGCCAGAT GAACAAACCGTAATGACCATGGATTGTCCCGAAGGAC GTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGCTATGCAACGAAGTATAACAAGAGTCTTTTAATTAATGTATATATATAAACTCGGGTATTATTATATGCTGGACTTGGCTTGTATAAATCTACCTGGTGCCTTCGGCTATATAAACAAATATTTATGCATGTGTTTCGCATGCATAGTAATGTATGCGCTAGATTATGTGTCGAATAAATCAGATGGGAGATGCCCATGGTTTAT                 ]
[+] EMBL CF293742             [  CAGCTTGGATGTGTGCTTACAGAAGTCATCAGTGACAAAATGGAGAAGCGATGTTCCATTCTTGCACTACTTGGCTTAGTACTGCTGTTCTCCAACGTTATTGCTGAGGGAGCAGGCCTGAACAAAGCGATCTTTTCTCGCAAAGGTCTGAAAGAAGAACGCAAACTAGCTGTCACTGGAACAGCCTCATCCCTTGGCGGTTTACAAGGGCAATCGTCAAGCACCGGTGTTGGAGGTGTTAGCAGCAACAATGCTGAAAGTACAAATTCTGAAACTGGAGACTCTTCGTCAGCCTACACACCGATGAGTACTGCCACCACCACAGACTCCCACCATGACATGTCCATGGATCAGTATCGGAAGATCATCCACAACAGCCAGAT GAACAAACCGTAATGACCATGGATTGTCCCGAAGGAC GTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGTTATGCAACGAAGTATAACAAGAGTCTTTTAATTAATGTATATATATAAACTCGGGTATTATTATATGCTGGACTTGGCTTGTATAAATCTACCTGGTGCCTTCGGCTATATAAACAAATATTTATGCATGTGTTTCGCATGCATAGTAAaaa                                                                     ]
[+] EMBL CF295255             [    GCTTGGATGTGTGCTTACAGAAGTCATCAGTGACAAAATGGAGAAGCGATGTTCCATTCTTGCACTACTTGGCTTAGTACTGCTGTTCTCCAACGTTATTGCTGAGGGAGCAGGCCTGAACAAAGCGATCTTTTCTCGCAAAGGTCTGAAAGAAGAACGCAAACTAGCTGTCACTGGAACAGCCTCATCCCTTGGCGGTTTACAAGGGCAATCGTCAAGCACCGGTGTTGGAGGTGTTAGCAGCAACAATGCTGAAAGTACAAATTCTGAAACTGGAGACTCTTCGTCAGCCTACACACCGATGAGTACTGCCACCACCACAGACTCCCACCATGACATGTCCATGGATCAGTATCGGAAGATCATCCACAACAGCCAGAT GAACAAACCGTAATGACCATGGATTGTCCCGAAGGAC GTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGTTATGCAACGAAGTATAACAAGAGTCTTTTAATTAATGTATATATATAAACTCGGGTATTATTATATGCTGGACTTGGCTTGTATAAATCTACCTGGTGCCTTCGGCTATATAAACA                                                                                                         ]
[+] EMBL OSS15593A            [                             ATCAGTGACAAAATGGAGAAGCGATGTTCCATTCTTGCACTACTTGGCTTAGTACTGCTGTTCTCCAACGTTATTGCTGAGGGAGCAGGCCTGAACAAAGCGATCTTTTCTCGCAAAGGTCTGAAAGAAGAACGCAAACTAGCTGTCACTGGAACAGCCTCATCCCTTGGCGGTTTACAAGGGCAATCGTCAAGCACCGGTGTTGGAGGTGTTAGCAGCAACAATGCTGAAAGTACAAATTCTGAAACTGGAGACTCTTCGTCAGCCTACACACCGATGAGTACTGCCACCACCACAGACTCCCACCATGACATGTCCATGGATCAGTATCGGAAGATCATCCACAACAGCCAGNTGGAACAAACCGTAATGACCATGGATTGTCCCGNAGGACGGTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGTTATGCAACGGAGTATNACAAGNGTCTTTTAAT                                                                                                                                                                                             ]
[+] EMBL CB683765             [                                                               TTGCACTACTTGGCTTAGTACTGCTGTTCTCCAACGTTATTGCTGAGGGAGCAGGCCTGAACAAAGCGATCTTTTCTCGCAAAGGTCTGAAAGAAGAACGCAAACTAGCTGTCACTGGAACAGCCTCATCCCTTGGCGGTTTACAAGGGCAATCGTCAAGCACCGGTGTTGGAGGTGTTAGCAGCAACAATGCTGAAAGTACAAATTCTGAAACTGGAGACTCTTCGTCAGCCTACACACCGATGAGTACTGCCACCACCACAGACTCCCACCATGACATGTCCATGGATCAGTATCGGAAGATCATCCACAACAGCCAGAT GAACAAACCGTAATGACCATGGATTGTCCCGAAGGAC GTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGTTATGCAACGAAGTATAACAAGAGTCTTTTAATTAATGTATATATATAAACTCGGGTATTATTATATGCTGGACTTGGCTTGTATAAATCTACCTGGTGCCTTCGGCTATATAAACAAATATTTATGCATGTGTTTCGCATGCATAGTAATGTATGCGCTAGATTATGTGTCGAATAAATCAGATGGGAGATGCCCATGGTTTATGGTTAATAGCCAAAGCA]
[-] EMBL CF293743             [                                                                                                                                                                                                                                                                         AAATTCTGAAACTGGAGACTCTTCGTCAGCCTACACACCGATGAGTACTGCCACCACCACAGACTCCCACCATGACATGTCCATGGATCAGTATCGGAAGATCATCCACAACAGCCAGAT GAACAAACCGTAATGACCATGGATTGTCCCGAAGGAC GTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGTTATGCAACGAAGTATAACAAGAGTCTTTTAATTAATGTATATATATAAACTCGGGTATTATTATATGCTGGACTTGGCTTGTATAAATCTACCTGGTGCCTTCGGCTATATAAACAAATATTTATGCATGTGTTTCGCATGCATAGTAAaaaaa                                                                   ]




>consensus_10201#0
CCCAGCTTGGATGTGTGCTTACAGAAGTCATCAGTGACAAAATGGAGAAGCGATGTTCCA
TTCTTGCACTACTTGGCTTAGTACTGCTGTTCTCCAACGTTATTGCTGAGGGAGCAGGCC
TGAACAAAGCGATCTTTTCTCGCAAAGGTCTGAAAGAAGAACGCAAACTAGCTGTCACTG
GAACAGCCTCATCCCTTGGCGGTTTACAAGGGCAATCGTCAAGCACCGGTGTTGGAGGTG
TTAGCAGCAACAATGCTGAAAGTACAAATTCTGAAACTGGAGACTCTTCGTCAGCCTACA
CACCGATGAGTACTGCCACCACCACAGACTCCCACCATGACATGTCCATGGATCAGTATC
GGAAGATCATCCACAACAGCCAGATGAACAAACCGTAATGACCATGGATTGTCCCGAAGG
ACGTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGTTATGCAACGAAG
TATAACAAGAGTCTTTTAATTAATGTATATATATAAACTCGGGTATTATTATATGCTGGA
CTTGGCTTGTATAAATCTACCTGGTGCCTTCGGCTATATAAACAAATATTTATGCATGTG
TTTCGCATGCATAGTAATGTATGCGCTAGATTATGTGTCGAATAAATCAGATGGGAGATG
CCCATGGTTTATGGTTAATAGCCAAAGCA

consensusID : consensus_10201#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence

                              [CTTCCCAACCCATGGACCAATTGGTCCCCAATGGNAATCCAAGGTTAATCCGGGAAAGGAATCCAATCCNANCCAATCCAGCCAGAATGAACCAAACCGTAATGACCATGGATTGTCCCGAAGGACGTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGTTATGCAACGAAGTATAACAAGAGTCTTTTAATTAATGTATATATATAAACTCGGGTATTATTATATGCTGGACTTGGCTTGTATAAATCTACCTGGCTGTCGGCTATATAAACAAATATTTATGCATGTGTTTCGCATGCATAGTAATGTATGCGCTAGATTATGTGTCGAATAAATCAGATGGGAGATGCCCATGGTTTATGGTTAAA]

[+] EMBL AU101823             [CTTCCCAACCCATGGACCAATTGGTCCCCAATGGNAATCCAAGGTTAATCCGGGAAAGGAATCCAATCCNANCCAATCCAGCCAGAATGAACCAAACCGTAATGACCATGGATTGTCCCGAAGGACGTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGTTATGCAACGAAGTATAACAAGAGTCTTTTAATTAATGTATATATATAAACTCGGGTATTATTATATGCTGGACTTGGCTTGTATAAATCTACCTGGCTGTCGGCTATATAAACAAATATTTATGCATGTGTTTCGCATGCATAGTAATGTATGCGCTAGATTATGTGTCGAATAAATCAGATGGGAGATGCCCATGGTTTATGGTTAAA]




>consensus_10201#1
CTTCCCAACCCATGGACCAATTGGTCCCCAATGGNAATCCAAGGTTAATCCGGGAAAGGA
ATCCAATCCNANCCAATCCAGCCAGAATGAACCAAACCGTAATGACCATGGATTGTCCCG
AAGGACGTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGTTATGCAAC
GAAGTATAACAAGAGTCTTTTAATTAATGTATATATATAAACTCGGGTATTATTATATGC
TGGACTTGGCTTGTATAAATCTACCTGGCTGTCGGCTATATAAACAAATATTTATGCATG
TGTTTCGCATGCATAGTAATGTATGCGCTAGATTATGTGTCGAATAAATCAGATGGGAGA
TGCCCATGGTTTATGGTTAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10201#0      CCCAGCTTGGATGTGTGCTTACAGAAGTCATCAGTGACAAAATGGAGAAGCGATGTTCCA 60
consensus_10201#1      ------------------------------------------------------------
                                                                                   

consensus_10201#0      TTCTTGCACTACTTGGCTTAGTACTGCTGTTCTCCAACGTTATTGCTGAGGGAGCAGGCC 120
consensus_10201#1      ------------------------------------------------------------
                                                                                   

consensus_10201#0      TGAACAAAGCGATCTTTTCTCGCAAAGGTCTGAAAGAAGAACGCAAACTAGCTGTCACTG 180
consensus_10201#1      ------------------------------------------------------------
                                                                                   

consensus_10201#0      GAACAGCCTCATCCCTTGGCGGTTTACAAGGGCAATCGTCAAGCACCGGTGTTGGAGGTG 240
consensus_10201#1      ------------------------------------------------------------
                                                                                   

consensus_10201#0      TTAGCAGCAACAATGCTGAAAGTACAAATTCTGAAACTGGAGACTCTTCGTCAGCCTACA 300
consensus_10201#1      ---------------------------------------------CTTC-CCAACCCATG 14
                                                                    ****  ** ** *  

consensus_10201#0      CACCGATGAGTACTGCCACCACCACAGACTCCCACCATGACATGTCCATGGATCAGTATC 360
consensus_10201#1      GACCAATTGGT-------CCCCAATGGNAATCCAAGGTTA---ATCCGGGAA--AGGAAT 62
                        *** **  **       ** * *  *    ***   * *    ***  * *  ** *  

consensus_10201#0      GGAAGATCATCCACAACAGCCAGA-TGAAC-AAACCGTAATGACCATGGATTGTCCCGAA 418
consensus_10201#1      CCAATCCNANCCAATCCAGCCAGAATGAACCAAACCGTAATGACCATGGATTGTCCCGAA 122
                         **    * ***   ******** ***** *****************************

consensus_10201#0      GGACGTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGTTATGCAACGA 478
consensus_10201#1      GGACGTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGTTATGCAACGA 182
                       ************************************************************

consensus_10201#0      AGTATAACAAGAGTCTTTTAATTAATGTATATATATAAACTCGGGTATTATTATATGCTG 538
consensus_10201#1      AGTATAACAAGAGTCTTTTAATTAATGTATATATATAAACTCGGGTATTATTATATGCTG 242
                       ************************************************************

consensus_10201#0      GACTTGGCTTGTATAAATCTACCTGGTGCCTTCGGCTATATAAACAAATATTTATGCATG 598
consensus_10201#1      GACTTGGCTTGTATAAATCTACCTGG--CTGTCGGCTATATAAACAAATATTTATGCATG 300
                       **************************  *  *****************************

consensus_10201#0      TGTTTCGCATGCATAGTAATGTATGCGCTAGATTATGTGTCGAATAAATCAGATGGGAGA 658
consensus_10201#1      TGTTTCGCATGCATAGTAATGTATGCGCTAGATTATGTGTCGAATAAATCAGATGGGAGA 360
                       ************************************************************

consensus_10201#0      TGCCCATGGTTTATGGTTAATAGCCAAAGCA 689
consensus_10201#1      TGCCCATGGTTTATGGTTAAA---------- 381
                       ********************