These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10203#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1053 fasta sequence [TCTCCACATCTTCTCGCCACCGCCGACGCCGCCGCGGCTCGCCTCCTCTCCTCCCCTCGCCGCCGCCACCGCCGCCGCAGAAGCTTGGCTCATCGCGGCGCGAGTGCCTGATGGCCGCGGCCTCCATCCCCGCGAGCTCCCAGCCCTTCAAGCTGATCCTGGGGTCATCGTCGGTGGCCAGGAAGCACATCCTCACCGAGATGGGGCTCGAGTTCGAAGTCATGACTGCAGATATCGACGAGAAGAGCATCAGGAGGGAGAACCCTGACGAGCTAGTGACGGTTCTTGCGGAGGCCAAGGCTGATGCTATCATGTCCAGATTGAATATTTCTGATTACCAGAAAGAAGGCGACAGGCCAACACTCCTGATCACTTCTGACATAGTGGTCGTCCATGAAGGGATTATCAGAGAAAAGCCAACCACTAAGGAAGAAGCACGCCAATTCCTGAAAGGTTATTCTGGCAGCCATGTCTCAACCGTGGGGTCTGTAGTCGTAACTAATCTGACAACTGGGAAGAGGCTTGAAAGCCTAGACAAAGCTGAGGTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTGATCGATGAGAGGGTAGTATTTAGGGTCGCTGGTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTGGTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAATTAATTCAGGATGCATTGTCCGCTTAGCCTAGTAATATTTGGCGCTCTGATTATTTATCACATTATTACGATATTTATCAGTGAAAATTTGTCAGGGATATGGTGGTATACTGGTATCTCATAGCCATTTTTTTAGTTCAAAAGCTTTTGAAGGATTTCAGAACCCGACACACGAAGACGCATGGTGTGCAAGAACACTCGAGTCCCTCTATCTACTGTTTTGATGAGATTCTATCATTGTACTACTTACACGTTGACAGAATATACTGTCATTGTGAAGCGTTCAATCAATATCTCCATGGGGAATGAGAATGTTGCAAAAGAACTCGCAATT] [+] EMBL AK060533 [TCTCCACATCTTCTCGCCACCGCCGACGCCGCCGCGGCTCGCCTCCTCTCCTCCCCTCGCCGCCGCCACCGCCGCCGCAGAAGCTTGGCTCATCGCGGCGCGAGTGCCTGATGGCCGCGGCCTCCATCCCCGCGAGCTCCCAGCCCTTCAAGCTGATCCTGGGGTCATCGTCGGTGGCCAGGAAGCACATCCTCACCGAGATGGGGCTCGAGTTCGAAGTCATGACTGCAGATATCGACGAGAAGAGCATCAGGAGGGAGAACCCTGACGAGCTAGTGACGGTTCTTGCGGAGGCCAAGGCTGATGCTATCATGTCCAGATTGAATATTTCTGATTACCAGAAAGAAGGCGACAGGCCAACACTCCTGATCACTTCTGACATAGTGGTCGTCCATGAAGGGATTATCAGAGAAAAGCCAACCACTAAGGAAGAAGCACGCCAATTCCTGAAAGGTTATTCTGGCAGCCATGTCTCAACCGTGGGGTCTGTAGTCGTAACTAATCTGACAACTGGGAAGAGGCTTGAAAGCCTAGACAAAGCTGAGGTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTGATCGATGAGAGGGTAGTATTTAGGGTCGCTGGTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTGGTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAATTAATTCAGGATGCATTGTCCGCTTAGCCTAGTAATATTTGGCGCTCTGATTATTTATCACATTATTACGATATTTATCAGTGAAAATTTGTCAGGGATATGGTGGTATACTGGTATCTCATAGCCATTTTTTTAGTTCAAAAGCTTTTGAAGGATTTCAGAACCCGACACACGAAGACGCATGGTGTGCAAGAACACTCGAGTCCCTCTATCTACTGTTTTGATGAGATTCTATCATTGTACTACTTACACGTTGACTGAATATACTGTCATTGTGAAGCGTTCAATCAATATCTCCATGGGGAATGAGAATGTTGCAAAAGAACTCGCAATT] [+] EMBL CB680204 [ ACCGCCGACGCCGCCGCGGCTCGCCTCCTCTCCTCCCCTCGCCGCCGCCACCGCCGCCGCAGAAGCTTGGCTCATCGCGGCGCGAGTGCCTGATGGCCGCGGCCTCCATCCCCGCGAGCTCCCAGCCCTTCAAGCTGATCCTGGGGTCATCGTCGGTGGCCAGGAAGCACATCCTCACCGAGATGGGGCTCGAGTTCGAAGTCATGACTGCAGATATCGACGAGAAGAGCATCAGGAGGGAGAACCCTGACGAGCTAGTGACGGTTCTTGCGGAGGCCAAGGCTGATGCTATCATGTCCAGATTGAATATTTCTGATTACCAGAAAGAAGGCGACAGGCCAACACTCCTGATCACTTCTGACATAGTGGTCGTCCATGAAGGGATTATCAGAGAAAAGCCAACCACTAAGGAAGAAGCACGCCAATTCCTGAAAGGTTATTCTGGCAGCCATGTCTCAACCGTGGGGTCTGTAGTCGTAACTAATCTGACAACTGGGAAGAGGCTTGAAAGCCTAGACAAAGCTGAGGTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTGATCGATGAGAGGGTAGTATTTAGGGTCGCTGGTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTGGTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAATTAATTCAGGATGCATTGTCCGCTTAGCCTAGTAATATTTGGCGCTCTGATTATTTATCACATTATTACGATATTTATCAGTGACAATTTGTCAGGGATATGGTGGTATA ] [+] EMBL CB680144 [ ACCGCCGACGCCGCCGCGGCTCGCCTCCTCTCCTCCCCTCGCCGCCGCCACCGCCGCCGCAGAAGCTTGGCTCATCGCGGCGCGAGTGCCTGATGGCCGCGGCCTCCATCCCCGCGAGCTCCCAGCCCTTCAAGCTGATCCTGGGGTCATCGTCGGTGGCCAGGAAGCACATCCTCACCGAGATGGGGCTCGAGTTCGAAGTCATGACTGCAGATATCGACGAGAAGAGCATCAGGAGGGAGAACCCTGACGAGCTAGTGACGGTTCTTGCGGAGGCCAAGGCTGATGCTATCATGTCCAGATTGAATATTTCTGATTACCAGAAAGAAGGCGACAGGCCAACACTCCTGATCACTTCTGACATAGTGGTCGTCCATGAAGGGATTATCAGAGAAAAGCCAACCACTAAGGAAGAAGCACGCCAATTCCTGAAAGGTTATTCTGGCAGCCATGTCTCAACCGTGGGGTCTGTAGTCGTAACTAATCTGACAACTGGGAAGAGGCTTGAAAGCCTAGACAAAGCTGAGGTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTGATCGATGAGAGGGTAGTATTTAGGGTCGCTGGTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTGGTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAATTAATTCAGGATGCATTGTCCGCTTAGCCTAGTAATATTTGGCGCTCTGATTATTTATCACATTATTACGATATTTATCAGTGAAAATTTGTCAGGGATATG ] [-] EMBL CB680205 [ CAGATATCGACGAGAAGAGCATCAGGAGGGAGAACCCTGACGAGCTAGTGACGGTTCTTGCGGAGGCCAAGGCTGATGCTATCATGTCCAGATTGAATATTTCTGATTACCAGAAAGAAGGCGACAGGCCAACACTCCTGATCACTTCTGACATAGTGGTCGTCCATGAAGGGATTATCAGAGAAAAGCCAACCACTAAGGAAGAAGCACGCCAATTCCTGAAAGGTTATTCTGGCAGCCATGTCTCAACCGTGGGGTCTGTAGTCGTAACTAATCTGACAACTGGGAAGAGGCTTGAAAGCCTAGACAAAGCTGAGGTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTGATCGATGAGAGGGTAGTATTTAGGGTCGCTGGTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTGGTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAATTAATTCAGGATGCATTGTCCGCTTAGCCTAGTAATATTTGGCGCTCTGATTATTTATCACATTATTACGATATTTATCAGTGAAAATTTGTCAGGGATATGGTGGTATACTGGTATCTCATAGCCATTTTTTTAGTTCAAAAGCTTTTGAAGGATTTCAGAACCCGACACACGAAGACGCATGGTGTGCAAGAACACTCGAGTCCCTCTATCTACTGTTTTGATGAGATTCTATCATTGTACTACTTACACGTTGAAAGGATATACTGTCATTGTGAAGCGTTCAAaaaaaa ] [-] EMBL CB680145 [ CAGATATCGACGAGAAGAGCATCAGGAGGGAGAACCCTGACGAGCTAGTGACGGTTCTTGCGGAGGCCAAGGCTGATGCTATCATGTCCAGATTGAATATTTCTGATTACCAGAAAGAAGGCGACAGGCCAACACTCCTGATCACTTCTGACATAGTGGTCGTCCATGAAGGGATTATCAGAGAAAAGCCAACCACTAAGGAAGAAGCACGCCAATTCCTGAAAGGTTATTCTGGCAGCCATGTCTCAACCGTGGGGTCTGTAGTCGTAACTAATCTGACAACTGGGAAGAGGCTTGAAAGCCTAGACAAAGCTGAGGTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTGATCGATGAGAGGGTAGTATTTAGGGTCGCTGGTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTGGTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAATTAATTCAGGATGCATTGTCCGCTTAGCCTAGTAATATTTGGCGCTCTGATTATTTATCACATTATTACGATATTTATCAGTGAAAATTTGTCAGGGATATGGTGGTATACTGGTATCTCATAGCCATTTTTTTAGTTCAAAAGCTTTTGAAGGATTTCAGAACCCGACACACGAAGACGCATGGTGTGCAAGAACACTCGAGTCCCTCTATTTACTGTTTTGATGAGATTCTATCATTGTACTACTTACACGTTGACGGAATATACTGTCATTGT ] consensusID : consensus_10203#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 673 fasta sequence [AGCCAACCACGAAGGAAGAAGCACGCCAATTCCTGAAAGTNTATTCTGGCAGCCATGTCGCAACCGTGGGGTCTGTAGTCGTAACTAATCTGACAACTGGGAAGAGGCTTGGAAGCCTAGACAAAGCTGAGGTGTACTTCCATGATATACCAGATGAGGTCATTGAAAACCTGATCGATGAGGGGGTAGTATTTAGGGTCGCAGGTGGCCTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTGGTTGGTTCTAGTGACAGTGTAAT-GGGGATCTCGAAGGATCTTGC--AAACAAATTAAT-CCAGGATGCATTGTAGCCTAGCAATATTTGGTGCTCTGTTCATTCATCACA-TTTATTACTGCTCCCAAAGAGATACTACCTATCGGTGNAAATATGTCAGGGACATGGTGGTATACTGGTATCTCATAGTCATTTTTGTAGCTCAAAAGCTTTTGAAGGATTTCAGAACCTGACACACGAAGACGCATGGCGTTCAAGAACACTTCAGTTCCTCTGTCTACTGTTTTGATGAGATTTTTATCATTGTACTTACACCTTTACTGAATATATACACTGTCATTGTGAAGCGTTCAGTCGATACCTTAATGGAAAACGAGGATGTTGCCAAAGAATTCGCAATTTAAATGTTAAATCGAGAAAAAA] [+] EMBL OSC0911 [AGCCAACCACGAAGGAAGAAGCACGCCAATTCCTGAAAGTNTATTCTGGCAGCCATGTCGCAACCGTGGGGTCTGTAGTCGTAACTAATCTGACAACTGGGAAGAGGCTTGGAAGCCTAGACAAAGCTGAGGTGTACTTCCATGATATACCAGATGAGGTCATTGAAAACCTGATCGATGAGGGGGTAGTATTTAGGGTCGCAGGTGGCCTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTGGTTGGTTCTAGTGACAGTGTAAT GGGGATCTCGAAGGATCTTGC AAACAAATTAAT CCAGGATGCATTGTAGCCTAGCAATATTTGGTGCTCTGTTCATTCATCACA TTTATTACTGCTCCCAAAGAGATACTACCTATCGGTGNAAATATGTCAGGGACATGGTGGTATACTGGTATCTCATAGTC ] [+] EMBL AU102021 [ AGTNTAATGGGGGATCNCGAAGGATCTTGCAAAAACAAATTAATNCCAGGATGCATTGTAGCCTAGCAATATTTGGTGCTCTGTTCATTCATCACATTTTATTACTGCTCCCAAAGAGATACTA CTATCGGTGAAAATATGTCAGGGACATGGTGGTATACTGGTATCTCATAGTCATTTTTGTAGCTCAAAAGCTTTTGAAGGATTTCAGAACCTGACACACGAAGACGCATGGCGTTCAAGAACACTTCAGTTCCTCTGTCTACTGTTTTGATGAGATTTTTATCATTGTACTTACACCTTTACTGAATATATACACTGTCATTGTGAAGCGTTCAGTCGATACCTTAATGGAAAACGAGGATGTTGCCAAAGAATTCGCAATTTAAATGTTAAATCGAGAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10203#0 TCTCCACATCTTCTCGCCACCGCCGACGCCGCCGCGGCTCGCCTCCTCTCCTCCCCTCGC 60 consensus_10203#1 ------------------------------------------------------------ consensus_10203#0 CGCCGCCACCGCCGCCGCAGAAGCTTGGCTCATCGCGGCGCGAGTGCCTGATGGCCGCGG 120 consensus_10203#1 ------------------------------------------------------------ consensus_10203#0 CCTCCATCCCCGCGAGCTCCCAGCCCTTCAAGCTGATCCTGGGGTCATCGTCGGTGGCCA 180 consensus_10203#1 ------------------------------------------------------------ consensus_10203#0 GGAAGCACATCCTCACCGAGATGGGGCTCGAGTTCGAAGTCATGACTGCAGATATCGACG 240 consensus_10203#1 ------------------------------------------------------------ consensus_10203#0 AGAAGAGCATCAGGAGGGAGAACCCTGACGAGCTAGTGACGGTTCTTGCGGAGGCCAAGG 300 consensus_10203#1 ------------------------------------------------------------ consensus_10203#0 CTGATGCTATCATGTCCAGATTGAATATTTCTGATTACCAGAAAGAAGGCGACAGGCCAA 360 consensus_10203#1 ------------------------------------------------------------ consensus_10203#0 CACTCCTGATCACTTCTGACATAGTGGTCGTCCATGAAGGGATTATCAGAGAAAAGCCAA 420 consensus_10203#1 ------------------------------------------------------AGCCAA 6 ****** consensus_10203#0 CCACTAAGGAAGAAGCACGCCAATTCCTGAAAGGTTATTCTGGCAGCCATGTCTCAACCG 480 consensus_10203#1 CCACGAAGGAAGAAGCACGCCAATTCCTGAAAGTNTATTCTGGCAGCCATGTCGCAACCG 66 **** **************************** ****************** ****** consensus_10203#0 TGGGGTCTGTAGTCGTAACTAATCTGACAACTGGGAAGAGGCTTGAAAGCCTAGACAAAG 540 consensus_10203#1 TGGGGTCTGTAGTCGTAACTAATCTGACAACTGGGAAGAGGCTTGGAAGCCTAGACAAAG 126 ********************************************* ************** consensus_10203#0 CTGAGGTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTGATCGATGAGAGGG 600 consensus_10203#1 CTGAGGTGTACTTCCATGATATACCAGATGAGGTCATTGAAAACCTGATCGATGAGGGGG 186 ******************************** **** ****************** *** consensus_10203#0 TAGTATTTAGGGTCGCTGGTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTG 660 consensus_10203#1 TAGTATTTAGGGTCGCAGGTGGCCTGTTGCTTGAACATCCATTGACATTACCATTTGTTG 246 **************** ****** ************************************ consensus_10203#0 AAGCAGTGGTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAAT 720 consensus_10203#1 AAGCAGTGGTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAAT 306 ************************************************************ consensus_10203#0 TAATTCAGGATGCATTGTCCGCTTAGCCTAGTAATATTTGGCGCTCTGATTATTTATCAC 780 consensus_10203#1 TAATCCAGGATGCATTGT------AGCCTAGCAATATTTGGTGCTCTGTTCATTCATCAC 360 **** ************* ******* ********* ****** * *** ***** consensus_10203#0 ATT-ATTAC------------GATATT---TATCAGTGAAAATTTGTCAGGGATATGGTG 824 consensus_10203#1 ATTTATTACTGCTCCCAAAGAGATACTACCTATCGGTGNAAATATGTCAGGGACATGGTG 420 *** ***** **** * **** *** **** ********* ****** consensus_10203#0 GTATACTGGTATCTCATAGCCATTTTTTTAGTTCAAAAGCTTTTGAAGGATTTCAGAACC 884 consensus_10203#1 GTATACTGGTATCTCATAGTCATTTTTGTAGCTCAAAAGCTTTTGAAGGATTTCAGAACC 480 ******************* ******* *** **************************** consensus_10203#0 CGACACACGAAGACGCATGGTGTGCAAGAACACTCGAGTCCCTCTATCTACTGTTTTGAT 944 consensus_10203#1 TGACACACGAAGACGCATGGCGTTCAAGAACACTTCAGTTCCTCTGTCTACTGTTTTGAT 540 ******************* ** ********** *** ***** ************** consensus_10203#0 GAGATTCT-ATCATTGTACT-ACTTACACGTTGACAGAATATACTGTCATTGTGAAGCGT 1002 consensus_10203#1 GAGATTTTTATCATTGTACTTACACCTTTACTGAATATATACACTGTCATTGTGAAGCGT 600 ****** * *********** ** *** *** ****************** consensus_10203#0 TCAATCAATATCTCCATGGGGAATGAGAATGTTGCAAAAGAACTCGCAATT--------- 1053 consensus_10203#1 TCAGTCGATACCTTAATGGAAAACGAGGATGTTGCCAAAGAATTCGCAATTTAAATGTTA 660 *** ** *** ** **** ** *** ******* ****** ******** consensus_10203#0 ------------- consensus_10203#1 AATCGAGAAAAAA 673 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||