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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10203#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1053 fasta sequence
[TCTCCACATCTTCTCGCCACCGCCGACGCCGCCGCGGCTCGCCTCCTCTCCTCCCCTCGCCGCCGCCACCGCCGCCGCAGAAGCTTGGCTCATCGCGGCGCGAGTGCCTGATGGCCGCGGCCTCCATCCCCGCGAGCTCCCAGCCCTTCAAGCTGATCCTGGGGTCATCGTCGGTGGCCAGGAAGCACATCCTCACCGAGATGGGGCTCGAGTTCGAAGTCATGACTGCAGATATCGACGAGAAGAGCATCAGGAGGGAGAACCCTGACGAGCTAGTGACGGTTCTTGCGGAGGCCAAGGCTGATGCTATCATGTCCAGATTGAATATTTCTGATTACCAGAAAGAAGGCGACAGGCCAACACTCCTGATCACTTCTGACATAGTGGTCGTCCATGAAGGGATTATCAGAGAAAAGCCAACCACTAAGGAAGAAGCACGCCAATTCCTGAAAGGTTATTCTGGCAGCCATGTCTCAACCGTGGGGTCTGTAGTCGTAACTAATCTGACAACTGGGAAGAGGCTTGAAAGCCTAGACAAAGCTGAGGTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTGATCGATGAGAGGGTAGTATTTAGGGTCGCTGGTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTGGTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAATTAATTCAGGATGCATTGTCCGCTTAGCCTAGTAATATTTGGCGCTCTGATTATTTATCACATTATTACGATATTTATCAGTGAAAATTTGTCAGGGATATGGTGGTATACTGGTATCTCATAGCCATTTTTTTAGTTCAAAAGCTTTTGAAGGATTTCAGAACCCGACACACGAAGACGCATGGTGTGCAAGAACACTCGAGTCCCTCTATCTACTGTTTTGATGAGATTCTATCATTGTACTACTTACACGTTGACAGAATATACTGTCATTGTGAAGCGTTCAATCAATATCTCCATGGGGAATGAGAATGTTGCAAAAGAACTCGCAATT]
[+] EMBL AK060533 [TCTCCACATCTTCTCGCCACCGCCGACGCCGCCGCGGCTCGCCTCCTCTCCTCCCCTCGCCGCCGCCACCGCCGCCGCAGAAGCTTGGCTCATCGCGGCGCGAGTGCCTGATGGCCGCGGCCTCCATCCCCGCGAGCTCCCAGCCCTTCAAGCTGATCCTGGGGTCATCGTCGGTGGCCAGGAAGCACATCCTCACCGAGATGGGGCTCGAGTTCGAAGTCATGACTGCAGATATCGACGAGAAGAGCATCAGGAGGGAGAACCCTGACGAGCTAGTGACGGTTCTTGCGGAGGCCAAGGCTGATGCTATCATGTCCAGATTGAATATTTCTGATTACCAGAAAGAAGGCGACAGGCCAACACTCCTGATCACTTCTGACATAGTGGTCGTCCATGAAGGGATTATCAGAGAAAAGCCAACCACTAAGGAAGAAGCACGCCAATTCCTGAAAGGTTATTCTGGCAGCCATGTCTCAACCGTGGGGTCTGTAGTCGTAACTAATCTGACAACTGGGAAGAGGCTTGAAAGCCTAGACAAAGCTGAGGTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTGATCGATGAGAGGGTAGTATTTAGGGTCGCTGGTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTGGTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAATTAATTCAGGATGCATTGTCCGCTTAGCCTAGTAATATTTGGCGCTCTGATTATTTATCACATTATTACGATATTTATCAGTGAAAATTTGTCAGGGATATGGTGGTATACTGGTATCTCATAGCCATTTTTTTAGTTCAAAAGCTTTTGAAGGATTTCAGAACCCGACACACGAAGACGCATGGTGTGCAAGAACACTCGAGTCCCTCTATCTACTGTTTTGATGAGATTCTATCATTGTACTACTTACACGTTGACTGAATATACTGTCATTGTGAAGCGTTCAATCAATATCTCCATGGGGAATGAGAATGTTGCAAAAGAACTCGCAATT]
[+] EMBL CB680204 [ ACCGCCGACGCCGCCGCGGCTCGCCTCCTCTCCTCCCCTCGCCGCCGCCACCGCCGCCGCAGAAGCTTGGCTCATCGCGGCGCGAGTGCCTGATGGCCGCGGCCTCCATCCCCGCGAGCTCCCAGCCCTTCAAGCTGATCCTGGGGTCATCGTCGGTGGCCAGGAAGCACATCCTCACCGAGATGGGGCTCGAGTTCGAAGTCATGACTGCAGATATCGACGAGAAGAGCATCAGGAGGGAGAACCCTGACGAGCTAGTGACGGTTCTTGCGGAGGCCAAGGCTGATGCTATCATGTCCAGATTGAATATTTCTGATTACCAGAAAGAAGGCGACAGGCCAACACTCCTGATCACTTCTGACATAGTGGTCGTCCATGAAGGGATTATCAGAGAAAAGCCAACCACTAAGGAAGAAGCACGCCAATTCCTGAAAGGTTATTCTGGCAGCCATGTCTCAACCGTGGGGTCTGTAGTCGTAACTAATCTGACAACTGGGAAGAGGCTTGAAAGCCTAGACAAAGCTGAGGTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTGATCGATGAGAGGGTAGTATTTAGGGTCGCTGGTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTGGTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAATTAATTCAGGATGCATTGTCCGCTTAGCCTAGTAATATTTGGCGCTCTGATTATTTATCACATTATTACGATATTTATCAGTGACAATTTGTCAGGGATATGGTGGTATA ]
[+] EMBL CB680144 [ ACCGCCGACGCCGCCGCGGCTCGCCTCCTCTCCTCCCCTCGCCGCCGCCACCGCCGCCGCAGAAGCTTGGCTCATCGCGGCGCGAGTGCCTGATGGCCGCGGCCTCCATCCCCGCGAGCTCCCAGCCCTTCAAGCTGATCCTGGGGTCATCGTCGGTGGCCAGGAAGCACATCCTCACCGAGATGGGGCTCGAGTTCGAAGTCATGACTGCAGATATCGACGAGAAGAGCATCAGGAGGGAGAACCCTGACGAGCTAGTGACGGTTCTTGCGGAGGCCAAGGCTGATGCTATCATGTCCAGATTGAATATTTCTGATTACCAGAAAGAAGGCGACAGGCCAACACTCCTGATCACTTCTGACATAGTGGTCGTCCATGAAGGGATTATCAGAGAAAAGCCAACCACTAAGGAAGAAGCACGCCAATTCCTGAAAGGTTATTCTGGCAGCCATGTCTCAACCGTGGGGTCTGTAGTCGTAACTAATCTGACAACTGGGAAGAGGCTTGAAAGCCTAGACAAAGCTGAGGTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTGATCGATGAGAGGGTAGTATTTAGGGTCGCTGGTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTGGTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAATTAATTCAGGATGCATTGTCCGCTTAGCCTAGTAATATTTGGCGCTCTGATTATTTATCACATTATTACGATATTTATCAGTGAAAATTTGTCAGGGATATG ]
[-] EMBL CB680205 [ CAGATATCGACGAGAAGAGCATCAGGAGGGAGAACCCTGACGAGCTAGTGACGGTTCTTGCGGAGGCCAAGGCTGATGCTATCATGTCCAGATTGAATATTTCTGATTACCAGAAAGAAGGCGACAGGCCAACACTCCTGATCACTTCTGACATAGTGGTCGTCCATGAAGGGATTATCAGAGAAAAGCCAACCACTAAGGAAGAAGCACGCCAATTCCTGAAAGGTTATTCTGGCAGCCATGTCTCAACCGTGGGGTCTGTAGTCGTAACTAATCTGACAACTGGGAAGAGGCTTGAAAGCCTAGACAAAGCTGAGGTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTGATCGATGAGAGGGTAGTATTTAGGGTCGCTGGTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTGGTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAATTAATTCAGGATGCATTGTCCGCTTAGCCTAGTAATATTTGGCGCTCTGATTATTTATCACATTATTACGATATTTATCAGTGAAAATTTGTCAGGGATATGGTGGTATACTGGTATCTCATAGCCATTTTTTTAGTTCAAAAGCTTTTGAAGGATTTCAGAACCCGACACACGAAGACGCATGGTGTGCAAGAACACTCGAGTCCCTCTATCTACTGTTTTGATGAGATTCTATCATTGTACTACTTACACGTTGAAAGGATATACTGTCATTGTGAAGCGTTCAAaaaaaa ]
[-] EMBL CB680145 [ CAGATATCGACGAGAAGAGCATCAGGAGGGAGAACCCTGACGAGCTAGTGACGGTTCTTGCGGAGGCCAAGGCTGATGCTATCATGTCCAGATTGAATATTTCTGATTACCAGAAAGAAGGCGACAGGCCAACACTCCTGATCACTTCTGACATAGTGGTCGTCCATGAAGGGATTATCAGAGAAAAGCCAACCACTAAGGAAGAAGCACGCCAATTCCTGAAAGGTTATTCTGGCAGCCATGTCTCAACCGTGGGGTCTGTAGTCGTAACTAATCTGACAACTGGGAAGAGGCTTGAAAGCCTAGACAAAGCTGAGGTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTGATCGATGAGAGGGTAGTATTTAGGGTCGCTGGTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTGGTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAATTAATTCAGGATGCATTGTCCGCTTAGCCTAGTAATATTTGGCGCTCTGATTATTTATCACATTATTACGATATTTATCAGTGAAAATTTGTCAGGGATATGGTGGTATACTGGTATCTCATAGCCATTTTTTTAGTTCAAAAGCTTTTGAAGGATTTCAGAACCCGACACACGAAGACGCATGGTGTGCAAGAACACTCGAGTCCCTCTATTTACTGTTTTGATGAGATTCTATCATTGTACTACTTACACGTTGACGGAATATACTGTCATTGT ]
consensusID : consensus_10203#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 673 fasta sequence
[AGCCAACCACGAAGGAAGAAGCACGCCAATTCCTGAAAGTNTATTCTGGCAGCCATGTCGCAACCGTGGGGTCTGTAGTCGTAACTAATCTGACAACTGGGAAGAGGCTTGGAAGCCTAGACAAAGCTGAGGTGTACTTCCATGATATACCAGATGAGGTCATTGAAAACCTGATCGATGAGGGGGTAGTATTTAGGGTCGCAGGTGGCCTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTGGTTGGTTCTAGTGACAGTGTAAT-GGGGATCTCGAAGGATCTTGC--AAACAAATTAAT-CCAGGATGCATTGTAGCCTAGCAATATTTGGTGCTCTGTTCATTCATCACA-TTTATTACTGCTCCCAAAGAGATACTACCTATCGGTGNAAATATGTCAGGGACATGGTGGTATACTGGTATCTCATAGTCATTTTTGTAGCTCAAAAGCTTTTGAAGGATTTCAGAACCTGACACACGAAGACGCATGGCGTTCAAGAACACTTCAGTTCCTCTGTCTACTGTTTTGATGAGATTTTTATCATTGTACTTACACCTTTACTGAATATATACACTGTCATTGTGAAGCGTTCAGTCGATACCTTAATGGAAAACGAGGATGTTGCCAAAGAATTCGCAATTTAAATGTTAAATCGAGAAAAAA]
[+] EMBL OSC0911 [AGCCAACCACGAAGGAAGAAGCACGCCAATTCCTGAAAGTNTATTCTGGCAGCCATGTCGCAACCGTGGGGTCTGTAGTCGTAACTAATCTGACAACTGGGAAGAGGCTTGGAAGCCTAGACAAAGCTGAGGTGTACTTCCATGATATACCAGATGAGGTCATTGAAAACCTGATCGATGAGGGGGTAGTATTTAGGGTCGCAGGTGGCCTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTGGTTGGTTCTAGTGACAGTGTAAT GGGGATCTCGAAGGATCTTGC AAACAAATTAAT CCAGGATGCATTGTAGCCTAGCAATATTTGGTGCTCTGTTCATTCATCACA TTTATTACTGCTCCCAAAGAGATACTACCTATCGGTGNAAATATGTCAGGGACATGGTGGTATACTGGTATCTCATAGTC ]
[+] EMBL AU102021 [ AGTNTAATGGGGGATCNCGAAGGATCTTGCAAAAACAAATTAATNCCAGGATGCATTGTAGCCTAGCAATATTTGGTGCTCTGTTCATTCATCACATTTTATTACTGCTCCCAAAGAGATACTA CTATCGGTGAAAATATGTCAGGGACATGGTGGTATACTGGTATCTCATAGTCATTTTTGTAGCTCAAAAGCTTTTGAAGGATTTCAGAACCTGACACACGAAGACGCATGGCGTTCAAGAACACTTCAGTTCCTCTGTCTACTGTTTTGATGAGATTTTTATCATTGTACTTACACCTTTACTGAATATATACACTGTCATTGTGAAGCGTTCAGTCGATACCTTAATGGAAAACGAGGATGTTGCCAAAGAATTCGCAATTTAAATGTTAAATCGAGAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10203#0 TCTCCACATCTTCTCGCCACCGCCGACGCCGCCGCGGCTCGCCTCCTCTCCTCCCCTCGC 60
consensus_10203#1 ------------------------------------------------------------
consensus_10203#0 CGCCGCCACCGCCGCCGCAGAAGCTTGGCTCATCGCGGCGCGAGTGCCTGATGGCCGCGG 120
consensus_10203#1 ------------------------------------------------------------
consensus_10203#0 CCTCCATCCCCGCGAGCTCCCAGCCCTTCAAGCTGATCCTGGGGTCATCGTCGGTGGCCA 180
consensus_10203#1 ------------------------------------------------------------
consensus_10203#0 GGAAGCACATCCTCACCGAGATGGGGCTCGAGTTCGAAGTCATGACTGCAGATATCGACG 240
consensus_10203#1 ------------------------------------------------------------
consensus_10203#0 AGAAGAGCATCAGGAGGGAGAACCCTGACGAGCTAGTGACGGTTCTTGCGGAGGCCAAGG 300
consensus_10203#1 ------------------------------------------------------------
consensus_10203#0 CTGATGCTATCATGTCCAGATTGAATATTTCTGATTACCAGAAAGAAGGCGACAGGCCAA 360
consensus_10203#1 ------------------------------------------------------------
consensus_10203#0 CACTCCTGATCACTTCTGACATAGTGGTCGTCCATGAAGGGATTATCAGAGAAAAGCCAA 420
consensus_10203#1 ------------------------------------------------------AGCCAA 6
******
consensus_10203#0 CCACTAAGGAAGAAGCACGCCAATTCCTGAAAGGTTATTCTGGCAGCCATGTCTCAACCG 480
consensus_10203#1 CCACGAAGGAAGAAGCACGCCAATTCCTGAAAGTNTATTCTGGCAGCCATGTCGCAACCG 66
**** **************************** ****************** ******
consensus_10203#0 TGGGGTCTGTAGTCGTAACTAATCTGACAACTGGGAAGAGGCTTGAAAGCCTAGACAAAG 540
consensus_10203#1 TGGGGTCTGTAGTCGTAACTAATCTGACAACTGGGAAGAGGCTTGGAAGCCTAGACAAAG 126
********************************************* **************
consensus_10203#0 CTGAGGTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTGATCGATGAGAGGG 600
consensus_10203#1 CTGAGGTGTACTTCCATGATATACCAGATGAGGTCATTGAAAACCTGATCGATGAGGGGG 186
******************************** **** ****************** ***
consensus_10203#0 TAGTATTTAGGGTCGCTGGTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTG 660
consensus_10203#1 TAGTATTTAGGGTCGCAGGTGGCCTGTTGCTTGAACATCCATTGACATTACCATTTGTTG 246
**************** ****** ************************************
consensus_10203#0 AAGCAGTGGTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAAT 720
consensus_10203#1 AAGCAGTGGTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAAT 306
************************************************************
consensus_10203#0 TAATTCAGGATGCATTGTCCGCTTAGCCTAGTAATATTTGGCGCTCTGATTATTTATCAC 780
consensus_10203#1 TAATCCAGGATGCATTGT------AGCCTAGCAATATTTGGTGCTCTGTTCATTCATCAC 360
**** ************* ******* ********* ****** * *** *****
consensus_10203#0 ATT-ATTAC------------GATATT---TATCAGTGAAAATTTGTCAGGGATATGGTG 824
consensus_10203#1 ATTTATTACTGCTCCCAAAGAGATACTACCTATCGGTGNAAATATGTCAGGGACATGGTG 420
*** ***** **** * **** *** **** ********* ******
consensus_10203#0 GTATACTGGTATCTCATAGCCATTTTTTTAGTTCAAAAGCTTTTGAAGGATTTCAGAACC 884
consensus_10203#1 GTATACTGGTATCTCATAGTCATTTTTGTAGCTCAAAAGCTTTTGAAGGATTTCAGAACC 480
******************* ******* *** ****************************
consensus_10203#0 CGACACACGAAGACGCATGGTGTGCAAGAACACTCGAGTCCCTCTATCTACTGTTTTGAT 944
consensus_10203#1 TGACACACGAAGACGCATGGCGTTCAAGAACACTTCAGTTCCTCTGTCTACTGTTTTGAT 540
******************* ** ********** *** ***** **************
consensus_10203#0 GAGATTCT-ATCATTGTACT-ACTTACACGTTGACAGAATATACTGTCATTGTGAAGCGT 1002
consensus_10203#1 GAGATTTTTATCATTGTACTTACACCTTTACTGAATATATACACTGTCATTGTGAAGCGT 600
****** * *********** ** *** *** ******************
consensus_10203#0 TCAATCAATATCTCCATGGGGAATGAGAATGTTGCAAAAGAACTCGCAATT--------- 1053
consensus_10203#1 TCAGTCGATACCTTAATGGAAAACGAGGATGTTGCCAAAGAATTCGCAATTTAAATGTTA 660
*** ** *** ** **** ** *** ******* ****** ********
consensus_10203#0 -------------
consensus_10203#1 AATCGAGAAAAAA 673
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||