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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1156 fasta sequence
[TTTGGAGCTCTCGGGTCGGGATCGATCGATTGATCGGAGAGGAAGGGGAAGAACTCCGGAGGGGGAGGAGGAGGAGGAGCACCGATGACGCGGGGGAAGCAGAAGATCGATGCGCAGCGGCGGAACGCGGAGAAGAACCAGAAGTCGAAGGGGTCCCAGCTCGAGGCCCGCGCCGTCGGCCTCAAGGTCATCTGCCCCATCTGCAAGGTGACGAATGAATCCGTCTCCTCTTCCCTTCCTGCTTGCTAATCCAACCAGTAGCTTGTAGCCTGCCGTATTCGGTATTCCCTCCCCAGCCCTAAGGCTAGACCGCTAGATTGGATGGATTCATGGAGGATTCGAGGGGATGGCTGGATCTTTAGCTTCTTGTTATCGTCTCATCCACGATCCACCCAGCCCTATGCTCCTATCCCATGCGATCTGAAAATCTCGAGCCGAGTGATCGATTTTGTCCGTCTTCGTCTATAGTCCCCGGATGCACCCCAATTACGGGGTAAGGAGAGACAGGGAGTTGATGTGGAAATTTCATAGGGGATAATTTTCTATTATTGTAATTGTTCTAACTTCGTCTCTCTAAGCACTGCATCTAGCCTGCCTGCCAAGGGTGGAACTAGTATGATTACATTACCCTAGTGATGTTCTTTTGGGAGATATTGCTGCTGTTATATTGTTTGTCCATTACCATTTCTATGATAATCACCGATCAAGGGC-GGATCCAGAAACAAAAAGTTGGGGGGACTCAAATACTGAGTACACCGATATAAACACATAA-TCTCAGTATTAAACTATGCTAAAATGCTATTATGAGACCTTTAGCACCTCCTACCTTATCAACTATATTCCCCTGCACCCAC-GTTGGATCCGCCCCTGCCTCTGATGAATACTGTGTTATGGTTGAACAATCAGGAAGGGTTGGGGAATATAGTTCTAGGCAAAATTTGTAGTTGGATCAATCATTTATTCTCAGTTTTGGTTATATTATACTGATGAGTGTGTAGTCGAGAGGTAGGTCCAAAGATGAGCATCTTTAAAGGAGAAAATTGCATCTCAGTGTCTGTACTGCAAGTTTTTGGTTGGTGCCTATTAGTACCACATTTTTTCCCCTTTGGGAAAATATCACACTGCTCATATCTTCCATCTGAACTATTTATGTTAA]
[+] EMBL AK121308 [TTTGGAGCTCTCGGGTCGGGATCGATCGATTGATCGGAGAGGAAGGGGAAGAACTCCGGAGGGGGAGGAGGAGGAGGAGCACCGATGACGCGGGGGAAGCAGAAGATCGATGCGCAGCGGCGGAACGCGGAGAAGAACCAGAAGTCGAAGGGGTCCCAGCTCGAGGCCCGCGCCGTCGGCCTCAAGGTCATCTGCCCCATCTGCAAGGTGACGAATGAATCCGTCTCCTCTTCCCTTCCTGCTTGCTAATCCAACCAGTAGCTTGTAGCCTGCCGTATTCGGTATTCCCTCCCCAGCCCTAAGGCTAGACCGCTAGATTGGATGGATTCATGGAGGATTCGAGGGGATGGCTGGATCTTTAGCTTCTTGTTATCGTCTCATCCACGATCCACCCAGCCCTATGCTCCTATCCCATGCGATCTGAAAATCTCGAGCCGAGTGATCGATTTTGTCCGTCTTCGTCTATAGTCCCCGGATGCACCCCAATTACGGGGTAAGGAGAGACAGGGAGTTGATGTGGAAATTTCATAGGGGATAATTTTCTATTATTGTAATTGTTCTAACTTCGTCTCTCTAAGCACTGCATCTAGCCTGCCTGCCAAGGGTGGAACTAGTATGATTACATTACCCTAGTGATGTTCTTTTGGGAGATATTGCTGCTGTTATATTGTTTGTCCATTACCATTTCTATGATAATCACCGATCAAGGGC GGATCCAGAAACAAAAAGTTGGGGGGACTCAAATACTGAGTACACCGATATAAACACATAA TCTCAGTATTAAACTATGCTAAAATGCTATTATGAGACCTTTAGCACCTCCTACCTTATCAACTATATTCCCCTGCACCCAC GTTGGATCCGCCCCTGCCTCTGATGAATACTGTGTTATGGTTGAACAATCAGGAAGGGTTGGGGAATATAGTTCTAGGCAAAATTTGTAGTTGGATCAATCATTTATTCTCAGTTTTGGTTATATTATACTGATGAGTGTGTAGTCGAGAGGTAGGTCCAAAGATGAGCATCTTTAAAGGAGAAAATTGCATCTCAGTGTCTGTACTGCAAGTTTTTGGTTGGTGCCTATTAGTACCACATTTTTTCCCCTTTGGGAAAATATCACACTGCTCATATCTTCCATCTGAACTATTTATGTTAA]
[+] EMBL CA766154 [ AGATCGATGCGCAGCGGCGGAACGCGGAGAAGAACC GAAGTCGAAGGGGTCCCAGCTCGAGGCCCGCGCCGTCGGCCTCAAGGTCATCTGCCCCATCTGCAAGGTGACGAATGAATCCGTCTCCTCTTCCCTTCCTGCTTGCTAATCCAACCAGNAGCTTGTAGCCTGCCGTATTCGGTATTCCCTCCCCAGCCCTAAGGCTAGACCGCTAGATTGGATGGATTCATGGAGGATTCGAGGGGATGGCTGGATCTTTAGCTTCTTGTTATCGTCTCATCCACGATCCACCCGGCCCTATGCTCCTATCCCATGCGATCTGAAAATCTCGAGCCGAGTGATCGATTTTGTCCGTCTTCGTCTATAGTCCCCGGATGCACCTCAATTACAGGGTAAGGAGAGACAGGGAGTTGATGTGGAAATTTCATAGGGGATAATTTTCTATTATTGNAATTGNTCTAACTTCGTCTCTCTGAGCACTGCATCTAGCCTGCCTGCCAAGGGTGGAACTAGTATGATTACATTACCCTAGTGATGTTCTTTTGGGAGATATTGCTGCTGGTATATTGTTNGTCCATTACCATTNCTATGATAATCACCGATCAAGGGCGGGATCCAGAAACAAAAAGNTGGGGGGACTCAAATACTGAGTACACCGATATAAACACATAATTCTCAGTATTAAACTATGCTNAAATGCTATTATGAGACCTTTAGCACCTNCTATCTTATNAACTATATTCCCCTGCANCCNCGGTGGGATCCGNCCCTGGCTCTGAg ]
consensusID : consensus_10208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 582 fasta sequence
[TTTGGAGCTCTCGGGTCGGGATCGATCGATTGATCGGAGAGGAAGGGGAAGAACTCCGGAGGGGGAGGAGGAGGAGGAGCACCGATGACGCGGGGGAAGCAGAAGATCGATGCGCA-CGGCGGA-ACGCGGAGAAGAACCAGAAGTCGAAGGGGTCCCAGCTCGAGGCCCGCGCCGTCGGCCTCAAGGTCATCTGCCCCATCTGCAAGGTTCAACTGGCCAATG-AGAAACAATTGATTGATCACTATGGATCAAAGCATCCCAAGGAAAAACCCCCTAGCCCATCAGAATAATTTGTGTTGGCCCTGATGCAGAAACATAAGT-TCTGCTTGCTCTGT-CCGCGAGATTGTTCGATCTGCCCCATACTTGGACCTCAACTGAAGTTTTACTCTACAATGTATGCATTTCCTCTTGTTTCTGGCTAGAGCCGTCATAAGCTTGTGCTTTCTATGAGAAGTATATCTTTTGATATCATAATGCCGAATCCCGAATGTATATCCCAACTGCATGTGGTACATTATCGGATAAGAGGGTGTTGAATTGTCAATAAAGCTTATGAAAAGTTTGACAAAAAAAAAAAAAAAA]
[+] EMBL CF310525 [TTTGGAGCTCTCGGGTCGGGATCGATCGATTGATCGGAGAGGAAGGGGAAGAACTCCGGAGGGGGAGGAGGAGGAGGAGCACCGATGACGCGGGGGAAGCAGAAGATCGATGCGCAGCGGCGGA ACGCGGAGAAGAACCAGAAGTCGAAGGGGTCCCAGCTCGAGGCCCGCGCCGTCGGCCTCAAGGTCATCTGCCCCATCTGCAAGGTTCAACTGGCCAATG AGAAACAATTGATTGATCACTATGGATCAAAGCATCCCAAGGAAAAATTCCCTAGCCCATCAGAATAATTTGTGTTGGCCCTGATGCAGAAACATAAGT TCTGCTTGCTCTGT CCGCGAGATTGTTCGATCTGCCCCATACTTGGACCTCAACTGAAGTTTTACTCTACAATGTATGCATTTCCTCTTGTTTCTGGCTAGAGCCGTCATAAGCTTGTGCTTTCTATGAGAAGTATATCTTTTGATATCATAATGCCGAATCCCGAATGTATATCCCAACTGCATGTGGTACATTATCGGATAAGAGGGTGTTGAATTGTCAATAAAGCTTATGA ]
[+] EMBL C29007 [ GGTCGGGATCGATCGATTGATCGGAGAGGAAGGGGAAGAACTCCGGAGGGNGAGGAGGAGGAGGAGCACCGATGACGCGGGGGAAGCAGAAGATCGATGCGCA GGCGGANACG GATGAAGAACCAGAAGTCGAAGGGGTCCCAGCTCGAGGCCCGCG CGTC GCCTCAAGGTCATCTGCCCCATCTGCAAGGTTCAACTTGCCAATGAAGANACAATTGATTGATCACTATGGATCAAAGCATCCCAAGGAAAAACCCCCTAGCCCATCAGAATAATTTGTGTTTGGCCTTATGCAGAAACATAAGTCTNTGCTTTCTCTGTNCCGCGAGAT ]
[+] EMBL C98039 [ cntccgGAGNAAGGGGAAGAACTCCGGAGGGGGAGNAGGAGGAGGANCCCCGNTGACNCGGGGGAANCAGAAGATCGATGCNCACCGGCGGA ACNCGGAGAAGACCCAGAANTCGAAGGGGTCCCAGCTCGAGNCCCGCGCCGTCGGCCTCAAGGTCATNTNCCCCATCTGCANGGTTCAANTGNCCANTG NGAANCAATTGATTGATCACTNTGGATCAAAGCATCCCANGGAAAAACCCCCTAGCCCATCAGAATAATTTGTGTTGNCCCTGATGCAGAAACATAAGT TCTGCTTGCTCTGT CCGCGAGATTGTTCGATCTGCCCCATACTTGGACCTCAACTGAAGTTTTACTCTACAATGTATGCATTTCCTCTTGTTTCTGGCTAGAGCCGTCATAAGCTTGTGCTTTCTATGAGAAGTATATCTTTTGATATCATAATGCCGAATCCCGAATGTATATCCCAACTGCATGTGGTACATTATCGGATAAGAGGGTGTTGAATTGTCAATAAAGCTTATGAAAAGTTTGACAAAAAAAAAAAAAAAA]
[+] EMBL C98038 [ AAGAACTCCGGA GGGGAGGAGGAGGAGGAGCACCGATGACGCGGGGGAAGCAGAAGATCGATGCGCA CGGCGGA ACGCGGAGAAGAACCAGAAGTCGAAGGGGTCCCAGCTCGAGGCCCGCGCCGTCGGCCTCAAGGTCATCTGCCCCATCTGCAAGGTTCAACTGGCCAATG AGAAACAATTGATTGATCACTATGGATCAAAGCATCCCAAGGAAAAACCCCCTAGCCCATCAGAATAATTTGTGTTGGCCCTGATGCAGAAACATAAGT TCTGCTTGCTCTGT CCGCGAGATTGTTCGATCTGCCCCATACTTGGACCTCAACTGAAGTTTTACTCTACAATGTATGCATTTCCTCTTGTTTCTGGCTAGAGCCGTCATAAGCTTGTGCTTTCTATGAGAAGTATATCTTTTGATATCATAATGCCGAATCCCGAATGTATATCCCAACTGCATGTGGTACATTATCGGATAAGANGGTGTTGAATTGTCAATAAAGCTTATGAAAAGTTTGACAA ]
[+] EMBL AU172377 [ CCAGAAGTCGAAGGGGTCCCAGCTCGAGGCCCGCGCCGTCGGCCTCAAGGTCATCTGCCCCATCTGCAAGGTTCAACTGGCCAATG AGAAACAATTGATTGATCACTATGGATCAAAGCATCCCAAGGAAAAACCCCCTAGCCCATCAGAATAATTTGTGTTGGCCCTGATGCAGAAACATAAGT TCTGCTTGCTCTGT CCGCGAGATTGTTCGATCTGCCCCATACTTGGACCTCAACTGAAGTTTTACTCTACAATGTATGCATTTCCTCTTGTTTCTGGCTAGAGCCGTCATAAGCTTGTGCTTTCTATGAGAAGTATATCTTTTGATATCATAATGCCGAATCCCGAATGTATATCCCAACTGCATGTGGTACATTATCGGATAAGAGGGTGTTGAATTGTCAATAAAGCTTATGAAAAGTTTGACAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10208#0 TTTGGAGCTCTCGGGTCGGGATCGATCGATTGATCGGAGAGGAAGGGGAAGAACTCCGGA 60
consensus_10208#1 TTTGGAGCTCTCGGGTCGGGATCGATCGATTGATCGGAGAGGAAGGGGAAGAACTCCGGA 60
************************************************************
consensus_10208#0 GGGGGAGGAGGAGGAGGAGCACCGATGACGCGGGGGAAGCAGAAGATCGATGCGCAGCGG 120
consensus_10208#1 GGGGGAGGAGGAGGAGGAGCACCGATGACGCGGGGGAAGCAGAAGATCGATGCGCA-CGG 119
******************************************************** ***
consensus_10208#0 CGGAACGCGGAGAAGAACCAGAAGTCGAAGGGGTCCCAGCTCGAGGCCCGCGCCGTCGGC 180
consensus_10208#1 CGGAACGCGGAGAAGAACCAGAAGTCGAAGGGGTCCCAGCTCGAGGCCCGCGCCGTCGGC 179
************************************************************
consensus_10208#0 CTCAAGGTCATCTGCCCCATCTGCAAGGT--GACGAATGAATCCGTCTCCTCT--TCCCT 236
consensus_10208#1 CTCAAGGTCATCTGCCCCATCTGCAAGGTTCAACTGGCCAATGAGAAACAATTGATTGAT 239
***************************** ** *** * * * * *
consensus_10208#0 TCCTGCTTGCTAATCCAACC-AGTAGCTTGTAGCCTGCCGTATTCGGTATTCCCTCCCCA 295
consensus_10208#1 CACTATGGATCAAAGCATCCCAAGGAAAAACCCCCTAGCCCATCAGAATAATTTGTGTTG 299
** ** ** ** * *** * ** *
consensus_10208#0 GCCCTAAGGCTAGACCGCTAGATTGGATGGATTCATGGAGGATTCGAGGGGATGGCTGGA 355
consensus_10208#1 GCCCTGATGCAGAAACATAAGTTCTGCTTGCTCTGT--------CCGCGAGATTGTTCGA 351
***** * ** * * ** * * * * * * * * *** * * **
consensus_10208#0 TCTTTAGCTTCTTGTTATCGTCTCATCC-ACGATCCACCCAGCCCTATGCTCCTATCCCA 414
consensus_10208#1 TCT---GCCCCATACTTGGACCTCAACTGAAGTTTTACTCTACAATGTATGCATTTCCTC 408
*** ** * * * **** * * * * ** * * * * * * ***
consensus_10208#0 TGCGATCTGAAAATCTCGAGCCGAGTGATCGATTTTGTCCGTCTTCGTCTATAGTCCCCG 474
consensus_10208#1 TTGTTTCTGG----CTAGAGCCG--TCAT-AAGCTTGTGC-TTTCTATGAGAAGT----- 455
* **** ** ****** * ** * **** * * * * ***
consensus_10208#0 GATGCACCCCAATTACGGGGTAAGGAGAGACAGGGAGTTGATGTGGAAATTTCATAGGGG 534
consensus_10208#1 -ATATCTTTTGATATCA---TAATGCCGAATCCCGAATGTATATCCCAACTGCATGTGGT 511
** ** * *** * * ** * ** * ** * *** **
consensus_10208#0 ATAATTTTCTATTATTGTAATTGTTCTAACTTCGTCTCTCTAAGCACTGCATCTAGCCTG 594
consensus_10208#1 ACATTATCGGATAA----GAGGGTGTTGAATT-GTC------AATAAAGCTTATGAAAAG 560
* * * * ** * * ** * * ** *** * * ** * * *
consensus_10208#0 CCTGCCAAGGGTGGAACTAGTATGATTACATTACCCTAGTGATGTTCTTTTGGGAGATAT 654
consensus_10208#1 TTTGACAAAAAAAAAAAAAAAA-------------------------------------- 582
** *** ** * *
consensus_10208#0 TGCTGCTGTTATATTGTTTGTCCATTACCATTTCTATGATAATCACCGATCAAGGGCGGA 714
consensus_10208#1 ------------------------------------------------------------
consensus_10208#0 TCCAGAAACAAAAAGTTGGGGGGACTCAAATACTGAGTACACCGATATAAACACATAATC 774
consensus_10208#1 ------------------------------------------------------------
consensus_10208#0 TCAGTATTAAACTATGCTAAAATGCTATTATGAGACCTTTAGCACCTCCTACCTTATCAA 834
consensus_10208#1 ------------------------------------------------------------
consensus_10208#0 CTATATTCCCCTGCACCCACGTTGGATCCGCCCCTGCCTCTGATGAATACTGTGTTATGG 894
consensus_10208#1 ------------------------------------------------------------
consensus_10208#0 TTGAACAATCAGGAAGGGTTGGGGAATATAGTTCTAGGCAAAATTTGTAGTTGGATCAAT 954
consensus_10208#1 ------------------------------------------------------------
consensus_10208#0 CATTTATTCTCAGTTTTGGTTATATTATACTGATGAGTGTGTAGTCGAGAGGTAGGTCCA 1014
consensus_10208#1 ------------------------------------------------------------
consensus_10208#0 AAGATGAGCATCTTTAAAGGAGAAAATTGCATCTCAGTGTCTGTACTGCAAGTTTTTGGT 1074
consensus_10208#1 ------------------------------------------------------------
consensus_10208#0 TGGTGCCTATTAGTACCACATTTTTTCCCCTTTGGGAAAATATCACACTGCTCATATCTT 1134
consensus_10208#1 ------------------------------------------------------------
consensus_10208#0 CCATCTGAACTATTTATGTTAA 1156
consensus_10208#1 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||