cluster # 10211

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Oryza sativa
cluster # 10211 cluster # 10211 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10211#0 length = 612 sequences # 4

consensus_10211#1 length = 539 sequences # 3

consensusID : consensus_10211#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 612
fasta sequence

                              [TTCCTCCCCCGTCCACCGCTGCTCGCGAATCACCACAGATCGCCGCGGCGGAGACGAAGAGCGGCGGCGCAGAGGCTCTCAGATCCGGCGAGATGGCGGCGAAGGCGATCTCGAGCCCCGTGCCGGTGGACTGGTACCCGACGCTGGCCGTCGTCATGGTCGCCGTCGGCCTCATGTTCACCGCCTCTTTCTTCATCTATGAAGCGACTTCATCCAGGCGTAACCGTAGCTTAGCAAAGGAGATTGCCACAGCAACCATCGCATCTGTTTTTCTGGGGTTTGGATCTCTTTTCGTGCTTCTTGCAAGT-GGTGTTTATGTCTGATCGCCTGGGGCCATGCAGAAAGCATTTTGTTGTGTTATCTATTCCATAGTGAAAGTTCATCTAGGATATGTAAGGTCCTGAAATTACGTGCATGTTCCTACTTCTTAGGTAATATGCCTTATCGACATGGGTATGCTTTAGATAAAAATTGACGAGAGGTGTTTAAGACTTATTTTTGTGCCATTATATTAGGCAAAATTTGCTACAGTGCACCGAAAGATTGCGGTCTTTGCTGTGACACACCCGAAGATTGTGTATTTGCTCGTGGACACCTAAAAAATATGGTAAT]

[+] EMBL C74679               [TTCCTCCCCCGTCCACCGCTGCTCGCGAATCACCACAGATCGCCGCGGCGGAGACGAAGAGCGGCGGCGCAGAGGCTCTCAGATCCGGCGANATGGCGGCGAAGGCGATCTCGAGCCCCGTGCCGGTGGACTGGTACCCGACGCTGGCCGTCGTCATGGNCCCCGTCGGCCTCATGTTCACCGCCTCTTTCTTCATCTATGAAGCGACTTCATCCAGGCGTAACCGTAGCTTAGCAAAGGAGATTGCCACAGCAACCATCGCATCTGTTTTTCTGGGGTTTGGATCTCTTTTCGTGCTTCTTGCAAGTGGGTGTTTATGTCTGATCGCCTGGGGCCATGCAGAAAGCATTTTGTTGTGTTA NNAATCCATA                                                                                                                                                                                                                                                 ]
[+] EMBL CF316016             [           TCCACCGCTGCTCGCGAATCACC CAGATCGCCGCGGCGGAGACGAAGAGCGGCGGCGCAGAGGCTCTCAGATCCGGCGAGATGGCGGCGAAGGCGATCTCGAGCCCCGTGCCGGTGGACTGGTACCCGACGCTGGCCGTCGTCATGGTCGCCGTCGGCCTCATGTTCACCGCCTCTTTCTTCATCTATGAAGCGACTTCATCCAGGCGTAACCGTAGCTTAGCAAAGGAGATTGCCACAGCAACCATCGCATCTGTTTTTCTGGGGTTTGGATCTCTTTTCGTGCTTCTTGCAAGT GGTGTTTATGTCTGATCGCCTGGGGCCATGCAGAAAGCATTTTGTTGTGTTATCTATTCCATAGTGAAAGTTCATCTAGGATATGTAAGGTCCTGAAATTACGTGCATGTTCCTACTTCTTAGGTAATATGCCTTATCGACATGGGTATGCTTTAGATAAAAATTGACGAGAGGTGTTTAAGACTTATTTTTGTGCCATTATATTAGGCAAAATTTGCTAC                                                                                   ]
[+] EMBL CF321032             [           TCCACCGCTGCTCGCGAATCACCACAGATCGCCGCGGCGGAGACGAAGAGCGGCGGCGCAGAGGCTCTCAGATCCGGCGAGATGGCGGCGAAGGCGATCTCGAGCCCCGTGCCGGTGGACTGGTACCCGACGCTGGCCGTCGTCATGGTCGCCGTCGGCCTCATGTTCACCGCCTCTTTCTTCATCTATGAAGCGACTTCATCCAGGCGTAACCGTAGCTTAGCAAAGGAGATTGCCACAGCAACCATCGCATCTGTTTTTCTGGGGTTTGGATCTCTTTTCGTGCTTCTTGCAAGT GGTGTTTATGTCTGATCGCCTGGGGCCATGCAGAAAGCATTTTGTTGTGTTATCTATTCCATAGTGAAAGTTCATCTAGGATATGTAAGGTCCTGAAATTACGTGCATGTTCCTACTTCTTAGGTAATATGCCTTATCGACATGGGTATGCTTTAGATAAAAATTGACGAGAGGTGTTTAAGACTTATTTTTGTGCCATTATATTAGGCAAAATTTGCT                                                                                     ]
[+] EMBL AK121337             [                  CTGCTCGCGAATCACCACAGATCGCCGCGGCGGAGACGAAGAGCGGCGGCGCAGAGGCTCTCAGATCCGGCGAGATGGCGGCGAAGGCGATCTCGAGCCCCGTGCCGGTGGACTGGTACCCGACGCTGGCCGTCGTCATGGTCGCCGTCGGCCTCATGTTCACCGCCTCTTTCTTCATCTATGAAGCGACTTCATCCAGGCGTAACCGTAGCTTAGCAAAGGAGATTGCCACAGCAACCATCGCATCTGTTTTTCTGGGGTTTGGATCTCTTTTCGTGCTTCTTGCAAGT GGTGTTTATGTCTGATCGCCTGGGGCCATGCAGAAAGCATTTTGTTGTGTTATCTATTCCATAGTGAAAGTTCATCTAGGATATGTAAGGTCCTGAAATTACGTGCATGTTCCTACTTCTTAGGTAATATGCCTTATCGACATGGGTATGCTTTAGATAAAAATTGACGAGAGGTGTTTAAGACTTATTTTTGTGCCATTATATTAGGCAAAATTTGCTACAGTGCACCGAAAGATTGCGGTCTTTGCTGTGACACACCCGAAGATTGTGTATTTGCTCGTGGACACCTAAAAAATATGGTAAT]




>consensus_10211#0
TTCCTCCCCCGTCCACCGCTGCTCGCGAATCACCACAGATCGCCGCGGCGGAGACGAAGA
GCGGCGGCGCAGAGGCTCTCAGATCCGGCGAGATGGCGGCGAAGGCGATCTCGAGCCCCG
TGCCGGTGGACTGGTACCCGACGCTGGCCGTCGTCATGGTCGCCGTCGGCCTCATGTTCA
CCGCCTCTTTCTTCATCTATGAAGCGACTTCATCCAGGCGTAACCGTAGCTTAGCAAAGG
AGATTGCCACAGCAACCATCGCATCTGTTTTTCTGGGGTTTGGATCTCTTTTCGTGCTTC
TTGCAAGTGGTGTTTATGTCTGATCGCCTGGGGCCATGCAGAAAGCATTTTGTTGTGTTA
TCTATTCCATAGTGAAAGTTCATCTAGGATATGTAAGGTCCTGAAATTACGTGCATGTTC
CTACTTCTTAGGTAATATGCCTTATCGACATGGGTATGCTTTAGATAAAAATTGACGAGA
GGTGTTTAAGACTTATTTTTGTGCCATTATATTAGGCAAAATTTGCTACAGTGCACCGAA
AGATTGCGGTCTTTGCTGTGACACACCCGAAGATTGTGTATTTGCTCGTGGACACCTAAA
AAATATGGTAAT

consensusID : consensus_10211#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 539
fasta sequence

                              [CGCGGCGGAGACGAAGGCGACGACGAGCCGACCGAGGAGGACGCGGCGCAGGCTCGGATCCGGCGAGAT-GC-GCGAAGGTGATCTCGAGCCCCGTGCCGGTGGACTGGTACCCGACGCTGGCCGTCGTCATGGTCGCCGTCGGCCTCATGTTCACCGCCTCTTTTTTCATCTATGAAGCGACTTCATCCAGGCGTAACCGTAGCTTAGCAAAGGAGATTGCCACAGCAACCATCGCATCTGTTTTTTTGGGGTTTGGATCTCTTTTCGTGCTTCTTGCAAGTGGTGTTTATGTCTGATCG-CCTGGG-GCCATGCAGAAAGCATTTTGTTGTGTTATCTATTCCATAGTGAAAGTTCATTTAGGATATGTAAGGTCCTGAAATTACGTGCATGTTCCTACTTTTTAGGTAATATGCCTTATCGACATGGGTATGCTTTAGATAAAAA-TTGACGAGAGGTGTTTAAGACTTATTTTTGTGCCATTATATTAGGCAAAATTTGCTACAGTGCCCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BI803030             [CGCGGCGGAGACGAAGGCGACGACGAGCCGACCGAGGAGGACGCGGCGCAGGCTCGGATCCGGCGAGAT GC GCGAAGGTGATCTCGAGCCCCGTGCCGGTGGATTGGTACCCAACGCTGGCCGTCGTCATGGTCGCCGTCGGCCTCATGTTCACCGCCTCTTTCTTCATCTATGAAGCGACTTCATCCAGGCGTAACCGTAGCTTAGCAAAGGAGATTGCTACAGCAACCATCGCGTCTGTTTTTCTGGGCTTTGGATCTCTTTTCGTGCTCCTTGCAAGTGGTGTTTATGTCTGATCGCCCTGGGCCCCATGCAGAAAGCATTTTGTTGTGTTATCTATTCCATAGTGAAAGTTCATCTAGGATATGTAAGGTCCTGAAATTACGTGCATGTTCCTATTTCTTAGGTAATAT CCTTATCGACATGGATATGCTTTAGATAAAAACCCCACCAGAGGTG TTAAGACTaaaaaaaa                                                                 ]
[-] EMBL CF321033             [                                                                GAGATGGCGGCGAAGGCGATCTCGAGCCCCGTGCCGGTGGACTGGTACCCGACGCTGGCCGTCGTCATGGTCGCCGTCGGCCTCATGTTCACCGCCTCTTTTTTCATCTATGAAGCGACTTCATCCAGGCGTAACCGTAGCTTAGCAAAGGAGATTGCCACAGCAACCATCGCATCTGTTTTTTTGGGGTTTGGATCTCTTTTCGTGCTTCTTGCAAGTGGTGTTTATGTCTGATCG CCTGGG GCCATGCAGAAAGCATTTTGTTGTGTTATCTATTCCATAGTGAAAGTTCATTTAGGATATGTAAGGTCCTGAAATTACGTGCATGTTCCTACTTTTTAGGTAATATGCCTTATCGACATGGGTATGCTTTAGATAAAAA TTGACGAGAGGTGTTTAAGACTTATTTTTGTGCCATTATATTAGGCAAAATTTGCTACAGTGCCCCGAAAAAAAAAAAAAAAAA           ]
[-] EMBL CF316017             [                                                                                                     TGGACTGGTACCCGACGCTGGCCGTTGTCATGGTTGCCGTCGGCCTCATGTTCACCGCCTCTTTTTTTATTTATGAAGCGACTTCATCCAGGCGTAACCGTAGCTTAGCAAAGGAGATTGCCACAGCAACCATTGCATTTGTTTTTTTGGGGTTTGGATCTCTTTTCGTGCTTTTTGCAAGTGGTGTTTATGTTTGATCG CCTGGG GCCATGCAAAAAGCATTTTGTTGTGTTATCTATTCCAAAGTGAAAGTTCATTTAGGATATGTAAGGTCCTGAAATTACGGGCATGTTCCTACTTTTTAGGTAATATGCCTTATCGACATGGGTATGCTTTAGATAAAAA TTGACGAAAGGTGTTTAAGACTTATTTTTGTGCCATTATATTAGGCAAAATTTGGTACAGTGCCCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_10211#1
CGCGGCGGAGACGAAGGCGACGACGAGCCGACCGAGGAGGACGCGGCGCAGGCTCGGATC
CGGCGAGATGCGCGAAGGTGATCTCGAGCCCCGTGCCGGTGGACTGGTACCCGACGCTGG
CCGTCGTCATGGTCGCCGTCGGCCTCATGTTCACCGCCTCTTTTTTCATCTATGAAGCGA
CTTCATCCAGGCGTAACCGTAGCTTAGCAAAGGAGATTGCCACAGCAACCATCGCATCTG
TTTTTTTGGGGTTTGGATCTCTTTTCGTGCTTCTTGCAAGTGGTGTTTATGTCTGATCGC
CTGGGGCCATGCAGAAAGCATTTTGTTGTGTTATCTATTCCATAGTGAAAGTTCATTTAG
GATATGTAAGGTCCTGAAATTACGTGCATGTTCCTACTTTTTAGGTAATATGCCTTATCG
ACATGGGTATGCTTTAGATAAAAATTGACGAGAGGTGTTTAAGACTTATTTTTGTGCCAT
TATATTAGGCAAAATTTGCTACAGTGCCCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10211#0      TTCCTCCCCCGTCCACCGCTGCTCGCGAATCACCACAGATCGCCGCGGCGGAGACGAAGA 60
consensus_10211#1      -----------------------CGCGGCGGAGACGAAGGCGACGACGAGCCGACCGAGG 37
                                              ****    *    *   ** **  * *  ***  ** 

consensus_10211#0      GCGGCGGCGCAGAGGCTCTCAGATCCGGCGAGATGGCGGCGAAGGCGATCTCGAGCCCCG 120
consensus_10211#1      AGGACGCGGCGCAGGCTC--GGATCCGGCGAGATG--CGCGAAGGTGATCTCGAGCCCCG 93
                         * **  **  ******   **************   ******* **************

consensus_10211#0      TGCCGGTGGACTGGTACCCGACGCTGGCCGTCGTCATGGTCGCCGTCGGCCTCATGTTCA 180
consensus_10211#1      TGCCGGTGGACTGGTACCCGACGCTGGCCGTCGTCATGGTCGCCGTCGGCCTCATGTTCA 153
                       ************************************************************

consensus_10211#0      CCGCCTCTTTCTTCATCTATGAAGCGACTTCATCCAGGCGTAACCGTAGCTTAGCAAAGG 240
consensus_10211#1      CCGCCTCTTTTTTCATCTATGAAGCGACTTCATCCAGGCGTAACCGTAGCTTAGCAAAGG 213
                       ********** *************************************************

consensus_10211#0      AGATTGCCACAGCAACCATCGCATCTGTTTTTCTGGGGTTTGGATCTCTTTTCGTGCTTC 300
consensus_10211#1      AGATTGCCACAGCAACCATCGCATCTGTTTTTTTGGGGTTTGGATCTCTTTTCGTGCTTC 273
                       ******************************** ***************************

consensus_10211#0      TTGCAAGTGGTGTTTATGTCTGATCGCCTGGGGCCATGCAGAAAGCATTTTGTTGTGTTA 360
consensus_10211#1      TTGCAAGTGGTGTTTATGTCTGATCGCCTGGGGCCATGCAGAAAGCATTTTGTTGTGTTA 333
                       ************************************************************

consensus_10211#0      TCTATTCCATAGTGAAAGTTCATCTAGGATATGTAAGGTCCTGAAATTACGTGCATGTTC 420
consensus_10211#1      TCTATTCCATAGTGAAAGTTCATTTAGGATATGTAAGGTCCTGAAATTACGTGCATGTTC 393
                       *********************** ************************************

consensus_10211#0      CTACTTCTTAGGTAATATGCCTTATCGACATGGGTATGCTTTAGATAAAAATTGACGAGA 480
consensus_10211#1      CTACTTTTTAGGTAATATGCCTTATCGACATGGGTATGCTTTAGATAAAAATTGACGAGA 453
                       ****** *****************************************************

consensus_10211#0      GGTGTTTAAGACTTATTTTTGTGCCATTATATTAGGCAAAATTTGCTACAGTGCACCGAA 540
consensus_10211#1      GGTGTTTAAGACTTATTTTTGTGCCATTATATTAGGCAAAATTTGCTACAGTGCCCCGAA 513
                       ****************************************************** *****

consensus_10211#0      AGATTGCGGTCTTTGCTGTGACACACCCGAAGATTGTGTATTTGCTCGTGGACACCTAAA 600
consensus_10211#1      AAAAAAAAAAAAAAAAAAAAAAAAAA---------------------------------- 539
                       * *                 * * *                                   

consensus_10211#0      AAATATGGTAAT 612
consensus_10211#1      ------------