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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10213#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2518 fasta sequence
[TACAACAGAATCGAAATACAGAATACTGGGATAACGACACACTGGGAGTCACTTGCAACCTTTAGGGTTGAATCTCCGGAGATGGAAATGAATCAACAGCATAATGAGGGCAACGAATCTTTCGTGGCCTTGATGAACGGTTTTGCTGGTGACGGGACGGCAACACTACCGAATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCAATTGAGGCCGACTCAGGCTTGTTGCCTGTGAACAGTAGCAACACTAATGAAAAAAGGAAGAGGCGTCTACAGAGGCTCACTGGCAAACAGTCGGAGGTACTTGAGGGGTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTGAGTGAGACAACAGGTCTTGGTTTAGATCAAGTGAAGTTTTGGTTTCAGAATAAAAGAACACAAGTAAAGACTATGTGCTGGAAGGAAGAGAACTATAAGTTGTCGGTGGAGAATGAAATTCTGAGGGATGAGAACAGGAGAGTTAAGATAGCTCACTGCACTGCTGTATGCCTCACTTGCTGTAATTCATCAGTACAGAACCAGCTTGCCGTTGAGATGGAAAGGTTAATGGGGCAGAGTGAGTGGCTGCAACAAGAGATTGCACGGTCGAATGGAACACCCCCGGCTGCAAACCTTGCCTTTCAACTTAATTCATCAGCAGACTATGTATTTTCAGGGCAACATGACCAACAAATGATTGCTGAACTAGCCAAAAACGCAATGCACGCATTGATTATTTTGGCCGAATCCCATGTCGCTCTATGGTTTCCCGTCCCTGGCTGTTCTTATGAAGTATTGAACAAGATGGCTTATGACCAAGCATATCCTGGGGATAACAGTGCAAACGCCATTGGATTCAAGACAGAGGCTACTCGTGCAGTTTCTATGGTGATGATGGACTACAAAAGCGTTGTGGATTTCCTCATGGATCCTTACAACTACCGAACTTTCTTTCCTGAAGTTATTTCCGGGGCAGTAACCAACAGGATCTACACGTGGCCTACCAGTGATGGTTATAATGGGGTTATACAACTGATGACTGTCGAGATGATGTTCCCATCGCCCCTGGTACCGGCTAGGAAATGCACATTCCTGCGCTATTGTAATGTGCTGAACGAAGGATTAGTGGTCGTCATTGATGTGTCATTGGACGATGGCAGTATCTTCTCCAAATGCCGTAAAATGCCATCAGGGTTTCTGATCCAATCCATAAGGCCAAACAGCTGCAAGGTCACTGCCATAGAGCACGTCCTTGCGGATGACACCGGTGTTCATGAGCTCTACCAGCCTCGTGTGAATGGACTCGTCTTCGGAGCTCGGCGCTGGGTGGCGACCATGGCGCGGCAGTCTGCACGCATGAGAGATGTTCATCACAACAAGACAGCTCCGCAAGTCAGCACGAAGGGGAGGAAGAATCTAATGAAGCTAGCGGACGACCTGCTCGCGAGCTTCGCCGGCGGCATCGCCGCCACTGGCGGAGGAACGTGGACCGTCGTGATCGGCGCCGGCACGGAGAAGGACATCAGGGTCGCGTACAGGAGGACCACCGAGGGCAGCAGCAGCTACAACGCGATCCTGTCCGTCACCGCGTCCCTGCGTCTGCCGCTGCCCATGAGGAAAACCTTCGATCTGCTCAGGAACCTTACTCACCGCTGCAAGTGGGACGTCCTGGTGCACGGCAGCGTGGTGAAGGAGGAGGTCACCATCGCCAGAGGCGTCGGGAACGACGACACTGTCACCGTCCTCCACTGCAAGCGCGCCGGCAGGGAGGACAGGGGAAGGACCATGATCCTGCAGAACAACGGGTACGACGCGTCGGGCTCGTTCATGGTCTACTCCCAGATCGACAGCGAGCTGATGAACACCATGGTCCTGAGCCCCAGCGACCTGCCGCCCGGGCGGGGCGGGCCGTCCCTCTACCCCACCGGCTTCTCCCTTCTCCCTGACGTCGAGGCTGCCCAGGACAGCAGCGGCATCGCCCTCGGCGAGGTTGGGGGAACTCTCATGACCATGGGCTTCCAGATTCCGGTGAAGCTCGCCAGTGGGGATCGCATGTATTCCCGGTCTGCGGCATCGGCAATCAGGCTCATGACTGACACCATTGCCCTCGTCAAGAAGACGCTGATGAACGAGCATTCTGGTATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGATTCATCGGCTCCGATCACCCTGCATCTCCCAGAATTTGCTGAATTAATTAGAACTTTAAGGTTGTGTTAACAACCTGTAATAATGTTTTTAAGGCCAAACTTATATCGTGTCTTTGCTGTAATAATGTAGTATGCGCCTGATGGATGTCGACTGCCGTGTACCGATGCAGTTTGCTTCGCAGAGACGCGGATACATTTGCTATCGTATGGATGCTCCTTTAGAAGCAAAAAAAAAA]
[+] EMBL AF317882 [TACAACAGAATCGAAATACAGAATACTGGGATAACGACACACTGGGAGTCACTTGCAACCTTTAGGGTTGAATCTCCGGAGATGGAAATGAATCAACAGCATAATGAGGGCAACGAATCTTTCGTGGCCTTGATGAACGGTTTTGCTGGTGACGGGACGGCAACACTACCGAATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCAATTGAGGCCGACTCAGGCTTGTTGCCTGTGAACAGTAGCAACACTAATGAAAAAAGGAAGAGGCGTCTACAGAGGCTCACTGGCAAACAGTCGGAGGTACTTGAGGGGTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTGAGTGAGACAACAGGTCTTGGTTTAGATCAAGTGAAGTTTTGGTTTCAGAATAAAAGAACACAAGTAAAGACTATGTGCTGGAAGGAAGAGAACTATAAGTTGTCGGTGGAGAATGAAATTCTGAGGGATGAGAACAGGAGAGTTAAGATAGCTCACTGCACTGCTGTATGCCTCACTTGCTGTAATTCATCAGTACAGAACCAGCTTGCCGTTGAGATGGAAAGGTTAATGGGGCAGAGTGAGTGGCTGCAACAAGAGATTGCACGGTCGAATGGAACACCCCCGGCTGCAAACCTTGCCTTTCAACTTAATTCATCAGCAGACTATGTATTTTCAGGGCAACATGACCAACAAATGATTGCTGAACTAGCCAAAAACGCAATGCACGCATTGATTATTTTGGCCGAATCCCATGTCGCTCTATGGTTTCCCGTCCCTGGCTGTTCTTATGAAGTATTGAACAAGATGGCTTATGACCAAGCATATCCTGGGGATAACAGTGCAAACGCCATTGGATTCAAGACAGAGGCTACTCGTGCAGTTTCTATGGTGATGATGGACTACAAAAGCGTTGTGGATTTCCTCATGGATCCTTACAACTACCGAACTTTCTTTCCTGAAGTTATTTCCGGGGCAGTAACCAACAGGATCTACACGTGGCCTACCAGTGATGGTTATAATGGGGTTATACAACTGATGACTGTCGAGATGATGTTCCCATCGCCCCTGGTACCGGCTAGGAAATGCACATTCCTGCGCTATTGTAATGTGCTGAACGAAGGATTAGTGGTCGTCATTGATGTGTCATTGGACGATGGCAGTATCTTCTCCAAATGCCGTAAAATGCCATCAGGGTTTCTGATCCAATCCATAAGGCCAAACAGCTGCAAGGTCACTGCCATAGAGCACGTCCTTGCGGATGACACCGGTGTTCATGAGCTCTACCAGCCTCGTGTGAATGGACTCGTCTTCGGAGCTCGGCGCTGGGTGGCGACCATGGCGCGGCAGTCTGCACGCATGAGAGATGTTCATCACAACAAGACAGCTCCGCAAGTCAGCACGAAGGGGAGGAAGAATCTAATGAAGCTAGCGGACGACCTGCTCGCGAGCTTCGCCGGCGGCATCGCCGCCACTGGCGGAGGAACGTGGACCGTCGTGATCGGCGCCGGCACGGAGAAGGACATCAGGGTCGCGTACAGGAGGACCACCGAGGGCAGCAGCAGCTACAACGCGATCCTGTCCGTCACCGCGTCCCTGCGTCTGCCGCTGCCCATGAGGAAAACCTTCGATCTGCTCAGGAACCTTACTCACCGCTGCAAGTGGGACGTCCTGGTGCACGGCAGCGTGGTGAAGGAGGAGGTCACCATCGCCAGAGGCGTCGGGAACGACGACACTGTCACCGTCCTCCACTGCAAGCGCGCCGGCAGGGAGGACAGGGGAAGGACCATGATCCTGCAGAACAACGGGTACGACGCGTCGGGCTCGTTCATGGTCTACTCCCAGATCGACAGCGAGCTGATGAACACCATGGTCCTGAGCCCCAGCGACCTGCCGCCCGGGCGGGGCGGGCCGTCCCTCTACCCCACCGGCTTCTCCCTTCTCCCTGACGTCGAGGCTGCCCAGGACAGCAGCGGCATCGCCCTCGGCGAGGTTGGGGGAACTCTCATGACCATGGGCTTCCAGATTCCGGTGAAGCTCGCCAGTGGGGATCGCATGTATTCCCGGTCTGCGGCATCGGCAATCAGGCTCATGACTGACACCATTGCCCTCGTCAAGAAGACGCTGATGAACGAGCATTCTGGTATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGATTCATCGGCTCCGATCACCCTGCATCTCCCAGAATTTGCTGAATTAATTAGAACTTTAAGGTTGTGTTAACAACCTGTAATAATGTTTTTAAGGCCAAACTTATATCGTGTCTTTGCTGTAATAATGTAGTATGCGCCTGATGGATGTCGACTGCCGTGTACCGATGCAGTTTGCTTCGCAGAGACGCGGATACATTTGCTATCGTATGGATGCTCCTTTAGAAGCAAAAAAAAAA]
[+] EMBL BI799693 [ CCCAGAATTTGCTGAATTAATAAGAACTTTAAGGTTGTGTTAACAACCTGTAATAATGTTTTTAAGGCC AACTTATATCGTGTCTTTGCTGTAATAATGTAGTATGCGCCTGCTGGATGTCGACTGCCATGTACCCATGCAGTTTGCTTCGCAGAGACGCCGATACATTTGCTATCGTATGGATGCTACTTTAGAACCAAAA ]
consensusID : consensus_10213#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2383 fasta sequence
[AGTGAGAATTAGCTTTATAAAAATGTTTAGTGGGTATTAGCTTTATAAAAAGAAAGGATTCTATCCTGGTTGAATATATTGTGTATGTTGCAGTATGGTACTCCTTTCTGAGGAGAATTTCATCATGTGGGTTATCTTCATTTTTCTTGGATGAACAGGTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTGAGTGAGACAACAGGTCTTGGTTTAGATCAAGTGAAGTTTTGGTTTCAGAATAAAAGAACACAAGTAAAGACTATGTGCTGGAAGGAAGAGAACTATAAGTTGTCGGTGGAGAATGAAATTCTGAGGGATGAGAACAGGAGAGTTAAGATAGCTCACTGCACTGCTGTATGCCTCACTTGCTGTAATTCATCAGTACAGAACCAGCTTGCCGTTGAGATGGAAAGGTTAATGGGGCAGAGTGAGTGGCTGCAACAAGAGATTGCACGGTCGAATGGAACACCCCCGGCTGCAAACCTTGCCTTTCAACTTAATTCATCAGCAGACTATGTATTTTCAGGGCAACATGACCAACAAATGATTGCTGAACTAGCCAAAAACGCAATGCACGCATTGATTATTTTGGCCGAATCCCATGTCGCTCTATGGTTTCCCGTCCCTGGGCTGTTCTTATGAAGTATTGAACAAGATGGCTTATGACCAAGCATATCCTGGGGATAACAGTGCAAACGCCATTGGATTCAAGACAGAGGCTACTCGTGCAGTTTCTATGGTGATGATGGACTACAAAAGCGTTGTGGATTTCCTCATGGATCCTTACAACTACCGAACTTTCTTTCCTGAAGTTATTTCCGGGGCAGTAACCAACAGGATCTACACGTGGCCTACCAGTGATGGTTATAATGGGGTTATACAACTGATGACTGTCGAGATGATGTTCCCATCGCCCCTGGTACCGGCTAGGAAATGCACATTCCTGCGCTATTGTAATGTGCTGAACGAAGGATTAGTGGTCGTCATTGATGTGTCATTGGACGATGGCAGTATCTTCTCCAAATGCCGTAAAATGCCATCAGGGTTTCTGATCCAATCCATAAGGCCAAACAGCTGCAAGGTCACTGCCATAGAGCACGTCCTTGCGGATGACACCGGTGTTCATGAGCTCTACCAGCCTTGTATGAATGGACTCGTCTTCGGAGCTCGGCGCTGGGTGGCGACCATGGCGCGGCAGTCTGCACGCATGAGAGATGTTCATCACAACAAGACAGCTCCGCAAGTCAGCACGAAGGGGAGGAAGAATCTAATGAAGCTAGCGGACGACCTGCTCGCGAGCTTCGCCGGCGGCATCGCCGCCACTGGCGGAGGAACGTGGACCGTCGTGATCGGCGCCGGCACGGAGAAGGACATCAGGGTCGCGTACAGGAGGACCACCGAGGGCAGCAGCAGCTACAACGCGATCCTGTCCGTCACCGCGTCCCTGCGTCTGCCGCTGCCCATGAGGAAAACCTTCGATCTGCTCAGGAACCTTACTCACCGCTGCAAGTGGGACGTCCTGGTGCACGGCAGCGTGGTGAAGGAGGAGGTCACCATCGCCAGAGGCGTCGGGAACGACGACACTGTCACCGTCCTCCACTGCAAGCGCGCCGGCAGGGAGGACAGGGGAAGGACCATGATCCTGCAGAACAACGGGTACGACGCGTCGGGCTCGTTCATGGTCTACTCCCAGATCGACAGCGAGCTGATGAACACCATGGTCCTGAGCCCCAGCGACCTGCCGCCCGGGCGGGGCGGGCCGTCCCTCTACCCCACCGGCTTCTCCCTTCTCCCTGACGTCGAGGCTGCCCAGGACAGCAGCGGCATCGCCCTCGGCGAGGTTGGGGGAACTCTCATGACCATGGGCTTCCAGATTCCGGTGAAGCTCGCCAGTGGGGATCGCATGTATTCCCGGTCTGCGGCATCGGCAATCAGGCTCATGACTGACACCATTGCCCTCGTCAAGAAGACGCTGATGAACGAGCATTCTGGTATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGATTCATCGGCTCCGATCACCCTGCATCTCCCAGAATTTGCTGAATTAATTAGAACTTTAAGGTTGTGTTAACAACCTGTAATAATGTTTTTAAGGCCAAACTTATATCGTGTCTTTGCTGTAATAATGTAGTATGCGCCTGATGGATGTCGACTGCCGTGTACCGATGCAGTTTGCTTCGCAGAGACGCGGATACATTTGCTATCGTATGGATGCTCCTTTAGAACCTATGTTGCCTCTTAATTTCTATGGGTGCTATTTTAGAAAAAAAAA]
[+] EMBL AK121338 [AGTGAGAATTAGCTTTATAAAAATGTTTAGTGGGTATTAGCTTTATAAAAAGAAAGGATTCTATCCTGGTTGAATATATTGTGTATGTTGCAGTATGGTACTCCTTTCTGAGGAGAATTTCATCATGTGGGTTATCTTCATTTTTCTTGGATGAACAGGTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTGAGTGAGACAACAGGTCTTGGTTTAGATCAAGTGAAGTTTTGGTTTCAGAATAAAAGAACACAAGTAAAGACTATGTGCTGGAAGGAAGAGAACTATAAGTTGTCGGTGGAGAATGAAATTCTGAGGGATGAGAACAGGAGAGTTAAGATAGCTCACTGCACTGCTGTATGCCTCACTTGCTGTAATTCATCAGTACAGAACCAGCTTGCCGTTGAGATGGAAAGGTTAATGGGGCAGAGTGAGTGGCTGCAACAAGAGATTGCACGGTCGAATGGAACACCCCCGGCTGCAAACCTTGCCTTTCAACTTAATTCATCAGCAGACTATGTATTTTCAGGGCAACATGACCAACAAATGATTGCTGAACTAGCCAAAAACGCAATGCACGCATTGATTATTTTGGCCGAATCCCATGTCGCTCTATGGTTTCCCGTCCCTGGGCTGTTCTTATGAAGTATTGAACAAGATGGCTTATGACCAAGCATATCCTGGGGATAACAGTGCAAACGCCATTGGATTCAAGACAGAGGCTACTCGTGCAGTTTCTATGGTGATGATGGACTACAAAAGCGTTGTGGATTTCCTCATGGATCCTTACAACTACCGAACTTTCTTTCCTGAAGTTATTTCCGGGGCAGTAACCAACAGGATCTACACGTGGCCTACCAGTGATGGTTATAATGGGGTTATACAACTGATGACTGTCGAGATGATGTTCCCATCGCCCCTGGTACCGGCTAGGAAATGCACATTCCTGCGCTATTGTAATGTGCTGAACGAAGGATTAGTGGTCGTCATTGATGTGTCATTGGACGATGGCAGTATCTTCTCCAAATGCCGTAAAATGCCATCAGGGTTTCTGATCCAATCCATAAGGCCAAACAGCTGCAAGGTCACTGCCATAGAGCACGTCCTTGCGGATGACACCGGTGTTCATGAGCTCTACCAGCCTTGTATGAATGGACTCGTCTTCGGAGCTCGGCGCTGGGTGGCGACCATGGCGCGGCAGTCTGCACGCATGAGAGATGTTCATCACAACAAGACAGCTCCGCAAGTCAGCACGAAGGGGAGGAAGAATCTAATGAAGCTAGCGGACGACCTGCTCGCGAGCTTCGCCGGCGGCATCGCCGCCACTGGCGGAGGAACGTGGACCGTCGTGATCGGCGCCGGCACGGAGAAGGACATCAGGGTCGCGTACAGGAGGACCACCGAGGGCAGCAGCAGCTACAACGCGATCCTGTCCGTCACCGCGTCCCTGCGTCTGCCGCTGCCCATGAGGAAAACCTTCGATCTGCTCAGGAACCTTACTCACCGCTGCAAGTGGGACGTCCTGGTGCACGGCAGCGTGGTGAAGGAGGAGGTCACCATCGCCAGAGGCGTCGGGAACGACGACACTGTCACCGTCCTCCACTGCAAGCGCGCCGGCAGGGAGGACAGGGGAAGGACCATGATCCTGCAGAACAACGGGTACGACGCGTCGGGCTCGTTCATGGTCTACTCCCAGATCGACAGCGAGCTGATGAACACCATGGTCCTGAGCCCCAGCGACCTGCCGCCCGGGCGGGGCGGGCCGTCCCTCTACCCCACCGGCTTCTCCCTTCTCCCTGACGTCGAGGCTG CCAGGACAGCAGCGGCATCGCCCTCGGCGAGGTTGGGGGAACTCTCATGACCATGGGCTTCCAGATTCCGGTGAAGCTCGCCAGTGGGGATCGCATGTATTCCCGGTCTGCGGCATCGGCAATCAGGCTCATGACTGACACCATTGCCCTCGTCAAGAAGACGCTGATGAACGAGCATTCTGGTATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGATTCATCGGCTCCGATCACCCTGCATCTCCCAGAATTTGCTGAATTAATTAGAACTTTAAGGTTGTGTTAACAACCTGTAATAATGTTTTTAAGGCCAAACTTATATCGTGTCTTTGCTGTAATAATGTAGTATGCGCCTGATGGATGTCGACTGCCGTGTACCGATGCAGTTTGCTTCGCAGAGACGCGGATACATTTGCTATCGTATGGATGCTC ]
[+] EMBL AK059864 [ TCAGCACGAAGGGGAGGAAGAATCTAATGAAGCTAGCGGACGACCTGCTCGCGAGCTTCGCCGGCGGCATCGCCGCCACTGGCGGAGGAACGTGGACCGTCGTGATCGGCGCCGGCACGGAGAAGGACATCAGGGTCGCGTACAGGAGGACCACCGAGGGCAGCAGCAGCTACAACGCGATCCTGTCCGTCACCGCGTCCCTGCGTCTGCCGCTGCCCATGAGGAAAACCTTCGATCTGCTCAGGAACCTTACTCACCGCTGCAAGTGGGACGTCCTGGTGCACGGCAGCGTGGTGAAGGAGGAGGTCACCATCGCCAGAGGCGTCGGGAACGACGACACTGTCACCGTCCTCCACTGCAAGCGCGCCGGCAGGGAGGACAGGGGAAGGACCATGATCCTGCAGAACAACGGGTACGACGCGTCGGGCTCGTTCATGGTCTACTCCCAGATCGACAGCGAGCTGATGAACACCATGGTCCTGAGCCCCAGCGACCTGCCGCCCGGGCGGGGCGGGCCGTCCCTCTACCCCACCGGCTTCTCCCTTCTCCCTGACGTCGAGGCTGCCCAGGACAGCAGCGGCATCGCCCTCGGCGAGGTTGGGGGAACTCTCATGACCATGGGCTTCCAGATTCCGGTGAAGCTCGCCAGTGGGGATCGCATGTATTCCCGGTCTGCGGCATCGGCAATCAGGCTCATGACTGACACCATTGCCCTCGTCAAGAAGACGCTGATGAACGAGCATTCTGGTATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGATTCATCGGCTCCGATCACCCTGCATCTCCCAGAATTTGCTGAATTAATTAGAACTTTAAGGTTGTGTTAACAACCTGTAATAATGTTTTTAAGGCCAAACTTATATCGTGTCTTTGCTGTAATAATGTAGTATGCGCCTGATGGATGTCGACTGCCGTGTACCGATGCAGTTTGCTTCGCAGAGACGCGGATACATTTGCTATCGTATGGATGCTCCTTTAGAACCTATGTTGCCTCTTAATTTCTATGGGT ]
[+] EMBL C74009 [ CACCGTCCTCCACTGCAAGCGCGCCGGCAGGGAGGACAGGGGAAGGACCATGATCCTGCAGAACAACGGGTACGACGCGTCGGGCTCGTTCATGGTCTACTCCCAGATCGACAGCGAGCTGATGAACACCATGGTCCTGAGCCCCAGCGACCTGCCGNCCGGGCGGGGCGGGCCGTCCCTCTACCCCACCGGCTTCTCCCTTCTCCCTGACGTCGAGGCTGCCCAGGACAGCAGCGGCATCG CCTCGG GAGGTTGGGGGAACTCTCATGACCATGGGCTTCCAGATTCCGGTGAAGCTCGCCAGTGGGGATCGCATGTATTCCCGGTCTGCGGNATCGGNAATCAGGCTCATGACTGACAACATTGNCCTCGTCAAGAAGACGNTGATGAACGAGCATTCTGGTATCTACGGGGTTAAGCCGTTTCACCCTTAGATTAAG ]
[+] EMBL AU029314 [ cCCCAGGACAGCAGCGGNATCGCCTTCGGCGAGGTTGGGGGAACTCTCATGACCATGGGCTTCCAGATTCCGGTGAAGCTCGCCAGTGGGGATCGCATGTATTCCCGGTCTGCGGCATCGGCAATCAGGCTCATGACTGACACCATTGCCCTCGTCAAGAAGACGCTGATGAACGAGCATTCTGGTATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGATTCATCGGCTCCGATCACCCTGCATCTCCCAGAATTTGCTGAATTAATTAGAACTTTAAGGTTGTGTTAACAACCTGTAATAATGTTTTTAAGGCCAAACTTATATCGTGTCTTTGCTGTAATAATGTAGTATGCGCCTGATGGATGTCGACTGCCGTGTACCGATGCAGTNTTNTTCGCAGAGACGCGGATACATTTGCTATCGTATGGATGCTCCTTTAGAACCTATGTTGCCTCTTAATTTCTATGGGTGCTATTTTAGAAAAAAAAA]
consensusID : consensus_10213#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 735 fasta sequence
[TGACTCCGACAATATGTGCGGTGTTGATCAGCGCGCCGGCAGGGAGGACAGGGGAAGGACCATGATCCTGCAGAACAACGGGTACGACGCGTCGGGCTCGTTCATGGTCTACTCCCAGATCGACAGCGAGCTGATGAACACCATGGTCCTGAGCCCCAGCGACCTGCCGCCCGGGCGGGGCGGGCCGTCCCTCTACCCCACCGGCTTCTCCCTTCTCCCTGACGTCGAGGCTGCCCAGGACAGCAGCGGCATCGCCCTCGGCGAGGTTGGGGGAACTCTCATGACCATGGGCTTCCAGATTCCGGTGAAGCTCGCCAGTGGGGATCGCATGTATTCCCGGTCTGCGGCATCGGCAATCAGGCTCATGACTGACACCATTGCCCTCGTCAAGAAGACGCTGATGAACGAGCATTCTGGTATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGATTCATCGGCTCCGATCACCCTGCATCTCCCAGAATTTGCTGAATTAATTAGAACTTTAAGGTTGTGTTAACAACCTGTAATAATGTTTTTAAGGCCAAACTTATATCGTGTCTTTGCTGTAATAATGTAGTATGCGCCTGATGGATGTCGACTGCCGTGTACCGATGCAGTTTGCTTCGCAGAGACGCGGATACATTTGCTATCGTATGGATGCTC]
[+] EMBL AK071723 [TGACTCCGACAATATGTGCGGTGTTGATCAGCGCGCCGGCAGGGAGGACAGGGGAAGGACCATGATCCTGCAGAACAACGGGTACGACGCGTCGGGCTCGTTCATGGTCTACTCCCAGATCGACAGCGAGCTGATGAACACCATGGTCCTGAGCCCCAGCGACCTGCCGCCCGGGCGGGGCGGGCCGTCCCTCTACCCCACCGGCTTCTCCCTTCTCCCTGACGTCGAGGCTGCCCAGGACAGCAGCGGCATCGCCCTCGGCGAGGTTGGGGGAACTCTCATGACCATGGGCTTCCAGATTCCGGTGAAGCTCGCCAGTGGGGATCGCATGTATTCCCGGTCTGCGGCATCGGCAATCAGGCTCATGACTGACACCATTGCCCTCGTCAAGAAGACGCTGATGAACGAGCATTCTGGTATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGATTCATCGGCTCCGATCACCCTGCATCTCCCAGAATTTGCTGAATTAATTAGAACTTTAAGGTTGTGTTAACAACCTGTAATAATGTTTTTAAGGCCAAACTTATATCGTGTCTTTGCTGTAATAATGTAGTATGCGCCTGATGGATGTCGACTGCCGTGTACCGATGCAGTTTGCTTCGCAGAGACGCGGATACATTTGCTATCGTATGGATGCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10213#1 ------------------------------------------------------------
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 TACAACAGAATCGAAATACAGAATACTGGGATAACGACACACTGGGAGTCACTTGCAACC 60
consensus_10213#1 ------------------------------------------------------------
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 TTTAGGGTTGAATCTCCGGAGATGGAAATGAATCAACAGCATAATGAGGGCAACGAATCT 120
consensus_10213#1 ------------------------------AGTGAGA-ATTAGCTTTATAAAA--ATGTT 27
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 TTCGTGGCCTTGATGAACGGTTTTGCTGGTGACGGGACGGCAACACTACCGAATGATGGG 180
consensus_10213#1 TAGTGG-GTATTAGCTTTATAAAAAGAAAGGATTCTATCCTGGTTGAATATA--TTGTGT 84
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 GAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCAATTGAGGCCGACTCAGGC 240
consensus_10213#1 ATGTTGC--------AGTA-TGGTACTCCTTTCTGAGGAGAATTTCATC-ATGTGGGTTA 134
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 TTGTTGCCTGTGAACAGTAGCAACACTAATGAAAAAAGGAAGAGGCGTCTACAGAGGCTC 300
consensus_10213#1 TCTTCATTTTTCTTGGATGAAC-----AGGTTTTTCAGCATCTGTGGGCATCCCGATGAT 189
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 ACTGGCAAACAGTCGGAGGTACTTGAGGGGTTTTTCAGCATCTGTGGGCATCCCGATGAT 360
consensus_10213#1 GGACAAAAGAGGCATCTGAGTGAGACAACAGGTCTTGGTTTAGATCAAGTGAAGTTTTGG 249
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 GGACAAAAGAGGCATCTGAGTGAGACAACAGGTCTTGGTTTAGATCAAGTGAAGTTTTGG 420
consensus_10213#1 TTTCAGAATAAAAGAACACAAGTAAAGACTATGTGCTGGAAGGAAGAGAACTATAAGTTG 309
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 TTTCAGAATAAAAGAACACAAGTAAAGACTATGTGCTGGAAGGAAGAGAACTATAAGTTG 480
consensus_10213#1 TCGGTGGAGAATGAAATTCTGAGGGATGAGAACAGGAGAGTTAAGATAGCTCACTGCACT 369
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 TCGGTGGAGAATGAAATTCTGAGGGATGAGAACAGGAGAGTTAAGATAGCTCACTGCACT 540
consensus_10213#1 GCTGTATGCCTCACTTGCTGTAATTCATCAGTACAGAACCAGCTTGCCGTTGAGATGGAA 429
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 GCTGTATGCCTCACTTGCTGTAATTCATCAGTACAGAACCAGCTTGCCGTTGAGATGGAA 600
consensus_10213#1 AGGTTAATGGGGCAGAGTGAGTGGCTGCAACAAGAGATTGCACGGTCGAATGGAACACCC 489
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 AGGTTAATGGGGCAGAGTGAGTGGCTGCAACAAGAGATTGCACGGTCGAATGGAACACCC 660
consensus_10213#1 CCGGCTGCAAACCTTGCCTTTCAACTTAATTCATCAGCAGACTATGTATTTTCAGGGCAA 549
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 CCGGCTGCAAACCTTGCCTTTCAACTTAATTCATCAGCAGACTATGTATTTTCAGGGCAA 720
consensus_10213#1 CATGACCAACAAATGATTGCTGAACTAGCCAAAAACGCAATGCACGCATTGATTATTTTG 609
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 CATGACCAACAAATGATTGCTGAACTAGCCAAAAACGCAATGCACGCATTGATTATTTTG 780
consensus_10213#1 GCCGAATCCCATGTCGCTCTATGGTTTCCCGTCCCTGGGCTGTTCTTATGAAGTATTGAA 669
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 GCCGAATCCCATGTCGCTCTATGGTTTCCCGTCCCTGG-CTGTTCTTATGAAGTATTGAA 839
consensus_10213#1 CAAGATGGCTTATGACCAAGCATATCCTGGGGATAACAGTGCAAACGCCATTGGATTCAA 729
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 CAAGATGGCTTATGACCAAGCATATCCTGGGGATAACAGTGCAAACGCCATTGGATTCAA 899
consensus_10213#1 GACAGAGGCTACTCGTGCAGTTTCTATGGTGATGATGGACTACAAAAGCGTTGTGGATTT 789
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 GACAGAGGCTACTCGTGCAGTTTCTATGGTGATGATGGACTACAAAAGCGTTGTGGATTT 959
consensus_10213#1 CCTCATGGATCCTTACAACTACCGAACTTTCTTTCCTGAAGTTATTTCCGGGGCAGTAAC 849
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 CCTCATGGATCCTTACAACTACCGAACTTTCTTTCCTGAAGTTATTTCCGGGGCAGTAAC 1019
consensus_10213#1 CAACAGGATCTACACGTGGCCTACCAGTGATGGTTATAATGGGGTTATACAACTGATGAC 909
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 CAACAGGATCTACACGTGGCCTACCAGTGATGGTTATAATGGGGTTATACAACTGATGAC 1079
consensus_10213#1 TGTCGAGATGATGTTCCCATCGCCCCTGGTACCGGCTAGGAAATGCACATTCCTGCGCTA 969
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 TGTCGAGATGATGTTCCCATCGCCCCTGGTACCGGCTAGGAAATGCACATTCCTGCGCTA 1139
consensus_10213#1 TTGTAATGTGCTGAACGAAGGATTAGTGGTCGTCATTGATGTGTCATTGGACGATGGCAG 1029
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 TTGTAATGTGCTGAACGAAGGATTAGTGGTCGTCATTGATGTGTCATTGGACGATGGCAG 1199
consensus_10213#1 TATCTTCTCCAAATGCCGTAAAATGCCATCAGGGTTTCTGATCCAATCCATAAGGCCAAA 1089
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 TATCTTCTCCAAATGCCGTAAAATGCCATCAGGGTTTCTGATCCAATCCATAAGGCCAAA 1259
consensus_10213#1 CAGCTGCAAGGTCACTGCCATAGAGCACGTCCTTGCGGATGACACCGGTGTTCATGAGCT 1149
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 CAGCTGCAAGGTCACTGCCATAGAGCACGTCCTTGCGGATGACACCGGTGTTCATGAGCT 1319
consensus_10213#1 CTACCAGCCTTGTATGAATGGACTCGTCTTCGGAGCTCGGCGCTGGGTGGCGACCATGGC 1209
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 CTACCAGCCTCGTGTGAATGGACTCGTCTTCGGAGCTCGGCGCTGGGTGGCGACCATGGC 1379
consensus_10213#1 GCGGCAGTCTGCACGCATGAGAGATGTTCATCACAACAAGACAGCTCCGCAAGTCAGCAC 1269
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 GCGGCAGTCTGCACGCATGAGAGATGTTCATCACAACAAGACAGCTCCGCAAGTCAGCAC 1439
consensus_10213#1 GAAGGGGAGGAAGAATCTAATGAAGCTAGCGGACGACCTGCTCGCGAGCTTCGCCGGCGG 1329
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 GAAGGGGAGGAAGAATCTAATGAAGCTAGCGGACGACCTGCTCGCGAGCTTCGCCGGCGG 1499
consensus_10213#1 CATCGCCGCCACTGGCGGAGGAACGTGGACCGTCGTGATCGGCGCCGGCACGGAGAAGGA 1389
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 CATCGCCGCCACTGGCGGAGGAACGTGGACCGTCGTGATCGGCGCCGGCACGGAGAAGGA 1559
consensus_10213#1 CATCAGGGTCGCGTACAGGAGGACCACCGAGGGCAGCAGCAGCTACAACGCGATCCTGTC 1449
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 CATCAGGGTCGCGTACAGGAGGACCACCGAGGGCAGCAGCAGCTACAACGCGATCCTGTC 1619
consensus_10213#1 CGTCACCGCGTCCCTGCGTCTGCCGCTGCCCATGAGGAAAACCTTCGATCTGCTCAGGAA 1509
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 CGTCACCGCGTCCCTGCGTCTGCCGCTGCCCATGAGGAAAACCTTCGATCTGCTCAGGAA 1679
consensus_10213#1 CCTTACTCACCGCTGCAAGTGGGACGTCCTGGTGCACGGCAGCGTGGTGAAGGAGGAGGT 1569
consensus_10213#2 ------------------------------------------------------------
consensus_10213#0 CCTTACTCACCGCTGCAAGTGGGACGTCCTGGTGCACGGCAGCGTGGTGAAGGAGGAGGT 1739
consensus_10213#1 CACCATCGCCAGAGGCGTCGGGAACGACGACACTGTCACCGTCCTCCACTGCAAGCGCGC 1629
consensus_10213#2 ---------------------TGACTCCGACAATATGTGCGGTGTTGATC---AGCGCGC 36
consensus_10213#0 CACCATCGCCAGAGGCGTCGGGAACGACGACACTGTCACCGTCCTCCACTGCAAGCGCGC 1799
** ***** * * ** * * *******
consensus_10213#1 CGGCAGGGAGGACAGGGGAAGGACCATGATCCTGCAGAACAACGGGTACGACGCGTCGGG 1689
consensus_10213#2 CGGCAGGGAGGACAGGGGAAGGACCATGATCCTGCAGAACAACGGGTACGACGCGTCGGG 96
consensus_10213#0 CGGCAGGGAGGACAGGGGAAGGACCATGATCCTGCAGAACAACGGGTACGACGCGTCGGG 1859
************************************************************
consensus_10213#1 CTCGTTCATGGTCTACTCCCAGATCGACAGCGAGCTGATGAACACCATGGTCCTGAGCCC 1749
consensus_10213#2 CTCGTTCATGGTCTACTCCCAGATCGACAGCGAGCTGATGAACACCATGGTCCTGAGCCC 156
consensus_10213#0 CTCGTTCATGGTCTACTCCCAGATCGACAGCGAGCTGATGAACACCATGGTCCTGAGCCC 1919
************************************************************
consensus_10213#1 CAGCGACCTGCCGCCCGGGCGGGGCGGGCCGTCCCTCTACCCCACCGGCTTCTCCCTTCT 1809
consensus_10213#2 CAGCGACCTGCCGCCCGGGCGGGGCGGGCCGTCCCTCTACCCCACCGGCTTCTCCCTTCT 216
consensus_10213#0 CAGCGACCTGCCGCCCGGGCGGGGCGGGCCGTCCCTCTACCCCACCGGCTTCTCCCTTCT 1979
************************************************************
consensus_10213#1 CCCTGACGTCGAGGCTGCCCAGGACAGCAGCGGCATCGCCCTCGGCGAGGTTGGGGGAAC 1869
consensus_10213#2 CCCTGACGTCGAGGCTGCCCAGGACAGCAGCGGCATCGCCCTCGGCGAGGTTGGGGGAAC 276
consensus_10213#0 CCCTGACGTCGAGGCTGCCCAGGACAGCAGCGGCATCGCCCTCGGCGAGGTTGGGGGAAC 2039
************************************************************
consensus_10213#1 TCTCATGACCATGGGCTTCCAGATTCCGGTGAAGCTCGCCAGTGGGGATCGCATGTATTC 1929
consensus_10213#2 TCTCATGACCATGGGCTTCCAGATTCCGGTGAAGCTCGCCAGTGGGGATCGCATGTATTC 336
consensus_10213#0 TCTCATGACCATGGGCTTCCAGATTCCGGTGAAGCTCGCCAGTGGGGATCGCATGTATTC 2099
************************************************************
consensus_10213#1 CCGGTCTGCGGCATCGGCAATCAGGCTCATGACTGACACCATTGCCCTCGTCAAGAAGAC 1989
consensus_10213#2 CCGGTCTGCGGCATCGGCAATCAGGCTCATGACTGACACCATTGCCCTCGTCAAGAAGAC 396
consensus_10213#0 CCGGTCTGCGGCATCGGCAATCAGGCTCATGACTGACACCATTGCCCTCGTCAAGAAGAC 2159
************************************************************
consensus_10213#1 GCTGATGAACGAGCATTCTGGTATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAA 2049
consensus_10213#2 GCTGATGAACGAGCATTCTGGTATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAA 456
consensus_10213#0 GCTGATGAACGAGCATTCTGGTATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAA 2219
************************************************************
consensus_10213#1 AAACACCAGAGGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGG 2109
consensus_10213#2 AAACACCAGAGGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGG 516
consensus_10213#0 AAACACCAGAGGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGG 2279
************************************************************
consensus_10213#1 GGATTCATCGGCTCCGATCACCCTGCATCTCCCAGAATTTGCTGAATTAATTAGAACTTT 2169
consensus_10213#2 GGATTCATCGGCTCCGATCACCCTGCATCTCCCAGAATTTGCTGAATTAATTAGAACTTT 576
consensus_10213#0 GGATTCATCGGCTCCGATCACCCTGCATCTCCCAGAATTTGCTGAATTAATTAGAACTTT 2339
************************************************************
consensus_10213#1 AAGGTTGTGTTAACAACCTGTAATAATGTTTTTAAGGCCAAACTTATATCGTGTCTTTGC 2229
consensus_10213#2 AAGGTTGTGTTAACAACCTGTAATAATGTTTTTAAGGCCAAACTTATATCGTGTCTTTGC 636
consensus_10213#0 AAGGTTGTGTTAACAACCTGTAATAATGTTTTTAAGGCCAAACTTATATCGTGTCTTTGC 2399
************************************************************
consensus_10213#1 TGTAATAATGTAGTATGCGCCTGATGGATGTCGACTGCCGTGTACCGATGCAGTTTGCTT 2289
consensus_10213#2 TGTAATAATGTAGTATGCGCCTGATGGATGTCGACTGCCGTGTACCGATGCAGTTTGCTT 696
consensus_10213#0 TGTAATAATGTAGTATGCGCCTGATGGATGTCGACTGCCGTGTACCGATGCAGTTTGCTT 2459
************************************************************
consensus_10213#1 CGCAGAGACGCGGATACATTTGCTATCGTATGGATGCTCCTTTAGAACCTATGTTGCCTC 2349
consensus_10213#2 CGCAGAGACGCGGATACATTTGCTATCGTATGGATGCTC--------------------- 735
consensus_10213#0 CGCAGAGACGCGGATACATTTGCTATCGTATGGATGCTCCTTTAGAAGCAAAAAAAAAA- 2518
***************************************
consensus_10213#1 TTAATTTCTATGGGTGCTATTTTAGAAAAAAAAA 2383
consensus_10213#2 ----------------------------------
consensus_10213#0 ----------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||