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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1354 fasta sequence
[GGTGAACGGGATCGGGGCGCTGTGCTCGTTCGGCGTCGCCGCCGCCGCCACCGTCTGCGTCTTCCTCGTCGGCGGCAGGCTGCAGCACCACCACCGGCAGCAGCAGCAGCACAAGATCCAGCTTCAGCTCTATGGCGATGACAAGGTTAATTTGGTGACTCATTTCCAGTCCTATGTTTCTACTTTCTACCAAATCCATCATCAATCATTTTCTTTTGTCTATGGAAGATTACTTTTTTTTCTCATATAATTTAGTAGAATCATCCAAAATGGCGATCACTCATCCTTACTTTCGAAGTCACCGTGACTTTGTCACTGATATGTGACGTGACTTTGAAGGTAGAACATCCTAAACATCCTAATCCTTCTATAACTATGCGATTAGTAGCCAGATTTTACAAAACCGATGAAAACCGATCTTCTCGGACCAGCTCAAGAATACAAACCGTTTAGCTTGTTGGTCAAGTTAGAAAATATTCAAACTATAATTTTAATTTTTGATAAAATTTTATCGGTAGTCAATGGTTTTCAAACAATTTTCGTCAAAACCAAGAAAAAACATTGATTTCTTGGTTTTTGGCTCTGGATTGGTTTGGTGAATCTTGCTAGTAGCTTACTTGTGCTGTTGTGCATATGTATACCTAAATTAATTAATTAATTCAGATGCAGCTTGAGCCTTTCTAATATGAAGTTTCTACTAGAAGCACAAGAAGAAATCTTAATGATTTTGGCACGATGTTATTATGGGCTGATACAAATACAGAATCTAAAACCATCATATCGTTTACGTTCTAGTAAAAGAAAATTGGTTACTGACACCATGTTTTTTCATTCAATGTACAACTGAACAAAATTAGCTACTCAATCTTATCCATGAGAACTTTGCCTGAATCATGGTTTGATTTGTTGATCTGCAGAGAATGCAGCAGGTTGTGCAGCAGACATCAAGGCTGAACCAGGCAATGTCATCTGTGATGGGAGGGGGTGGCTCAACTAGGGCAAACATATCGTTTGGTGGCTACTATGAGGGCTTTTGATCAACCAATTAATTATTACAATGTGTATGGTCAAGTACAATTAAAGTTGCCATTGTAGCAAGTAGCAACTTAATTTGATATGGCACCCTACTCCCTAGTGGCCTTCATATATGCTGCAATCACCTTAGCTATGTGTTTACTACGTGTACACTAGATGTAAATAATTGGGTTCTTAGACCTTAGCACATATAGATGATGAGGATGGAATTATAGATTTATTAAGATGATAGTTAAGGAAAATAACAATTGTTTGACTTGTGCCTGAAGTCAAAAGGGGTTCATTAATGATGGAGAAGCTACTTTACTGAAAAAAAAGA]
[+] EMBL CB657735 [GGTGAACGGGATCGGGGCGCTGTGCTCGTTCGGCGTCGCCGCCGCCGCCACCGTCTGCGTCTTCCTCGTCGGCGGCAGGCTGCAGCACCACCACCGGCAGCAGCAGCAGCACAAGATCCAGCTTCAGCTCTATGGCGATGACAAGGTTAATTTGGTGACTCATTTCCAGTCCTATGTTTCTACTTTCTACCAAATCCATCATCAATCATTTTCTTTTGTCTATGGAAGATTACTTTTTTTTCTCATATAATTTAGTAGAATCATCCAAAATGGCGATCACTCATCCTTACTTTCGAAGTCACCGTGACTTTGTCACTGATATGTGACGTGACTTTGAAGGTAGAACATCCTAAACATCCTAATCCTTCTATAACTATGCGATTAGTAGCCAGATTTTACAAAACCGATGAAAACCGATCTTCTCGGACCAGCTCAAGAATACAAACCGTTTAGCTTGTTGGTCAAGTTAGAAAATATTCAAACTATAATTTTAATTTTTGATAAAATTTTATCGGTAGTCAATGGTTTTCAAACAATTTTCGTCAAAACCAAGAAAAAACATTGATTTCTTGGTTTTTGGCTCTGGATTGGTTTGGTGAATCTTGCTAGTAGCTTACTTGTGCTGTTGTGCATATGTATACCTAAATTAATTAATTAATTCAGATGCAGCTTGAGCCTTTCTAATATGAAGTTTCTACTAGAAGCACAAGAAGAAATCTTAATGATTTTGGCACGATGTTATTATGGGCTGATACAAATACAGAATCTAAAACCATCATATCGTTTACGTTCTAGTAAAAGAAAATTGGTTACTGACA ]
[-] EMBL CB657736 [ TGATTTCTTGGTTTTTGGCTCTGGATTGGTTTGGTGAATCTTGCTAGTAGCTTACTTGTGCTGTTGTGCATATGTATACCTAAATTAATTAATTAATTCAGATGCAGCTTGAGCCTTTCTAATATGAAGTTTCTACTAGAAGCACAAGAAGAAATCTTAATGATTTTGGCACGATGTTATTATGGGCTGATACAAATACAGAATCTAAAACCATCATATCGTTTACGTTCTAGTAAAAGAAAATTGGTTACTGACACCATGTTTTTTCATTCAATGTACAACTGAACAAAATTAGCTACTCAATCTTATCCATGAGAACTTTGCCTGAATCATGGTTTGATTTGTTGATCTGCAGAGAATGCAGCAGGTTGTGCAGCAGACATCAAGGCTGAACCAGGCAATGTCATCTGTGATGGGAGGGGGTGGCTCAACTAGGGCAAACATATCGTTTGGTGGCTACTATGAGGGCTTTTGATCAACCAATTAATTATTACAATGTGTATGGTCAAGTACAATTAAAGTTGCCATTGTAGCAAGTAGCAACTTAATTTGATATGGCACCCTACTCCCTAGTGGCCTTCATATATGCTGCAATCACCTTAGCTATGTGTTTACTACGTGTACACTAGATGTAAATAATTGGGTTCTTAGACCTTAGCACATATAGATGATGAGGATGGAATTATAGATTTATTAAGATGATAGTTAAGGAAAATAACAATTGTTTGACTTGTGCCTGAAGTCAAAAGGGGTTCATTAATGATGGAGAAGCTACTTTACTGAAAAAAAAGA]
consensusID : consensus_10214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 758 fasta sequence
[TGCCAACGTGGTCGACGGCGACGACGACGGCGGCGGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAAGAAGGCGGGGGCGGAGTGCGTGGTGTTCAGGGTGGGGAAGCTGCGGGTGAACGGGATCGGGGCGCTGTGCTCGTTCGGCGTCGCCGCCGCCGCCACCGTCTGCGTCTTCCTCGTCGGCGGCAGGCTGCAGCACCACCACCGGC-AGCAGCAGCAGCACAAGATCCAGCTTCAGCTCTATGGCGATGACAAGAGAATGCAGCAGGTTGTGCAGCAGACATCAAGGCTGAACCAGGCAATGTCATCTGTGATGGGAGGGGGTGGCTCAACTAGGGCAAACATATCGTTTGGTGGCTACTATGAGGGCTTTTGATCAACCAATTAATTATTACAATGTGTATGGTCAAGTACAATTAAAGTTGCCATTGTAGCAAGTAGCAACTTAATTTGATATGGCACCCTACTCCCTAGTGGCCTTCATATATGCTGCAATCACCTTAGCTATGTGTTTACTACGTGTACACTAGATGTAAATAATTGGGTTCTTAGACCTTAGCACATATAGATGATGAGGATGGAATTATAGATTTATTAAGATGATAGTTAAGGAAAATAACAATTGTTTGACTTGTGCCTGAAGTCAAAATAGGTTCATTAATGATGGAGAAGCTACTTTACTGAAAAAAAGTTGTTTTTGATTGGTGAACTGGTAACATAACTGAACCAGTTGGTGGTTTTCNNNNNNNNNN]
[+] EMBL CB630565 [TGCCAACGTGGTCGACGGCGACGACGACGGCGGCGGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAAGAAGGCGGGGGCGGAGTGCGTGGTGTTCAGGGTGGGGAAGCTGCGGGTGAACGGGATCGGGGCGCTGTGCTCGTTCGGCGTCGCCGCCGCCGCCACCGTCTGCGTCTTCCTCGTCGGCGGCAGGCTGCAGCACCACCATCGGC AGCAGCAGCAGCACAAGATCCAGCTTCAGCTCTATGGCGATGACAAGAGAATGCAGCAGGTTGTGCAGCAGACATCAAGGCTGAACCAGGCAATGTCATCTGTGATGGGAGGGGGTGGCTCTACTACGGCAAACATATCGTTTGGTGGCTACTATGAGGGCTTTTGATCTACCAATTAATTATTACAATGTGTATGATCAAGTACAATTAAAGTTGCCATTGTATCAAGTATCAACTTAATTTGATATGGCACCCTACTCCCTAGTGGCCTTCATATATGCTGCAATCACCTTAGCTATGTGTTTACTACGTGTACACTAGATGTAAATAATTGGGTTCTTAGACCTTAGCACATATAGATGATGAGGATGGAATTATAGATTTATTAAGATGATAGTTAAGGAAAATAACAATTGTTTGACTTGTGCCTGAAGTCA ]
[-] EMBL CB630566 [ AGGGGAAGAAGGCGGGGGCGGAGTGCGTGGTGTTCAGGGTGGGGAAGCTGCGGGTGAACGGGATCGGGGCGCTGTGCTCGTTCGGCGTCGCCGCCGCCGCCACCGTCTGCGTCTTCCTCGTCGGCGGCAGGCTGCAGCACCACCATCGGC AGCAGCAGCAGCACAAGATCCAGCTTCAGCTCTATGGCGATGACAAGAGAATGCAGCAGGTTGTGCAGCAGACATCAAGGCTGAACCAGGCAATGTCATCTGTGATGGGAGGGGGTGGCTCAACTAGGGCAAACATATCGTTTGGTGGCTACTATGAGGGCTTTTGATCAACCAATTAATTATTACAATGTGTATGATCAAGTACAATTAAAGTTGCCATTGTAGCAAGTAGCAACTTAATTTGATATGGCACCCTACTCCCTAGTGGCCTTCATATATGCTGCAATCACCTTAGCTATGTGTTTACTACGTGTACACTAGATGTAAATAATTGGGTTCTTAGACCTTAGCACATATAGATGATGAGGATGGAATTATAGATTTATTAAGATGATAGTTAAGGAAAATAACAATTGTTTGACTTGTGCCTGAAGTCAAAATAGGTT ]
[+] EMBL AU055920 [ GTGGTGTTCAGGGTGGGGAAGCTGCGGGTGAACGGGATCGGGGCGCTGTGCTCGTTCGGCGTCG CGCCGCCGCCACCGTCTGCGTCTTCCTCGTCGGCGGCAGGCTGCAGCACCACCACCGGC AGCAGCAGCAGCACAAGATCCAGCTTCAGCTCTATGGCGATGACAAGAGAATGCAGCAGGTTGTGCAGCAGACATCAAGGCTGAACCAGGCAATGTCATCTGTGATGGGAGGGGGTGGCTCAACTAGGGCAAACATATCGTTTGGTGGCTACTATGAGGGCTTTTGATCAACCAATTAATTATTACAATGTGTATGGTCAAGTACAATTAAAGTTGCCATTGTAGCAAGTAGCAACTTAATTTGATATGGCACCCTACTCCCTAGTGGCCTTCATATATGCTGCAATCACCTTAGCTATGTGTTTACTACGTGTACACTAGATGTAAATAATTGGGTTCTTAGACCTTAGCACATATAGATGATGAGGATGGAATTATAGATTTATTAAGATGATAGTTAAGGAAAATAACAATTGTTTGACTTGTGCCTGAAGTCAAAATAGGTTCATTAATGATGGAGAAGCTACTTTACTGAAAAAA ]
[+] EMBL CA754694 [ TGTGCTCGTTCGGCGTCGCCGCCGCCGCCACCGTCTGCGTCTTCCTCGTCGGCGGCAGGCTGCAGCACCACCACCGGC AGCAGCAGCAGCACAAGATCCAGCTTCAGCTCTATGGCGATGACNAGAGAATGCAGCAGGTTGTGCAGCAGACATCAAGGCTGAACCAGGCAATGTCATCTGTGATGGGAGGGGGTGGCTCAACTAGGGCAAACATATCGTTTGGTGGCTACTATGAGGGCTTTTGATCAACCAATTAATTATTACAATGTGTATGGTCAAGTACAATTAAAGTTGCCATTGTAGCAAGTAGCAACTTAATTTGATATGGCACCCTACTCCCTAGTGGCCTTCATATATGCTGCAATCACCTTAGCTATGTGTTTACTACGTGTACACTAGATGTAAATAATTGGGTTCTTAGACCTTAGCACATATCGATGATGAGGATGGAATTATAGATTTATTAAGATGATAGCTAAGGAAAATAACAATTGTTTGACTTGTGCCTGAAGTCAAAATAGGTTCATTAATGATGGAGAAGCTACTGTACTGAAGATGAGTTGTTTTTGATTGGTGAACTGGTAACATAACTGAACCAGTTGGTGGTTTTCNNNNNNNNNN]
[+] EMBL AU095906 [ GTCTTCCTCGTCGGCGGCAGGCTGCAGCACCACCACCGGCAAGCAGCAGCAGCACAAGATCCAGCTTCAGCTCTATGGCGATGACAAGAGAATGCAGCAGGTTGTGCAGCAGACATCAAGGCTGAACCAGGCAATGTCATCTGTGATGGGNGGGGGTGGCTCAACTAGGGCAAACATATCGTTTGGTGGCTACTATGAGGGCTTTTGATCAACCAATTAATTATTANAATGTGTATGGTCAAGTACAATTAAAGTTGCCATTGTAGCAAGTAGCAACTTAATTTGATATGGCACCCTACTCCCTAGTGGCCTTCATATATGCTGCAATCACCTTAGCTATGTGTTTACTACGTGTACACTAGATGTAAATAATTGGGTTCTTAGACCTTAGCACATATAGATGATGAGGATGGAATTATAGATTTATTAAGATGATAGTTAAGGAAAATAACAATTGTTTGACTTGTGCCTGAAGTCAAAATAGGTTCATTAATGATGGAGAAGCTACTTTACTGAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10214#0 GGTGAACGGGATCGGGGCGCTGTGCTCGTTCGGCGTCGCCGCCGCCGCCACCGTCTGCGT 60
consensus_10214#1 ------------------------------------------------------------
consensus_10214#0 CTTCCTCGTCGGCGGCAGGCTGCAGCACCACCACCGGCAGCAGCAGCAGCACAAGATCCA 120
consensus_10214#1 ------------------------------------------------------------
consensus_10214#0 GCTTCAGCTCTATGGCGATGACAAGGTTAATTTGGTGACTCATTTCCAGTCCTATGTTTC 180
consensus_10214#1 ------------------------------------------------------------
consensus_10214#0 TACTTTCTACCAAATCCATCATCAATCATTTTCTTTTGTCTATGGAAGATTACTTTTTTT 240
consensus_10214#1 ------------------------------------------------------------
consensus_10214#0 TCTCATATAATTTAGTAGAATCATCCAAAATGGCGATCACTCATCCTTACTTTCGAAGTC 300
consensus_10214#1 ------------------------------------------------------------
consensus_10214#0 ACCGTGACTTTGTCACTGATATGTGACGTGACTTTGAAGGTAGAACATCCTAAACATCCT 360
consensus_10214#1 ------------------------------------------------------------
consensus_10214#0 AATCCTTCTATAACTATGCGATTAGTAGCCAGATTTTACAAAACCGATGAAAACCGATCT 420
consensus_10214#1 ------------------------------------------------------------
consensus_10214#0 TCTCGGACCAGCTCAAGAATACAAACCGTTTAGCTTGTTGGTCAAGTTAGAAAATATTCA 480
consensus_10214#1 ------------------------------------------------------------
consensus_10214#0 AACTATAATTTTAATTTTTGATAAAATTTTATCGGTAGTCAATGGTTTTCAAACAATTTT 540
consensus_10214#1 ------------------------------------------------------------
consensus_10214#0 CGTCAAAACCAAGAAAAAACATTGATTTCTTGGTTTTTGGCTCTGGATTGGTTTGGTGAA 600
consensus_10214#1 ------------------------------------------------------------
consensus_10214#0 TCTTGCTAGTAGCTTACTTGTGCTGTTGTGCATATGTATACCTAAATTAATTAATTAATT 660
consensus_10214#1 --------------------------------------TGCC-AACGTGGTCGACGGCGA 21
* ** ** * * *
consensus_10214#0 CAGATGCAGCTTGAGCCTTTCTAATATGAAGTTTCTACTAGAAGCACAAGAAGAAATCTT 720
consensus_10214#1 CGACGACGGCGGCGGCGAGGAGGAGGAGGAGG----AGGAGGAGGAGGAGGGGAAGAAGG 77
* * ** ** * * ** * ** ** * ** ***
consensus_10214#0 AATGATTTTGGCACGATGTTATTATGGGCTGATACAAATACAGA-ATCTAAAACCATCAT 779
consensus_10214#1 CGGGGGCGGAGTGCG-TGGTGTT-CAGGGTGGGGAAGCTGCGGGTGAACGGGATCGGGGC 135
* * ** ** * ** ** ** * * * * * *
consensus_10214#0 ATCGTTTACGTTCTAGTAAAAGAAAATTGGTTACTGACACCATGTTTTTTCATTCAATGT 839
consensus_10214#1 GCTGTGCTCGTTC-GGCGTCGCCGCCGCCGCCACCGTCTGCGT-CTTCCTCGTCGGCGGC 193
** ***** * * ** * * * * ** ** * *
consensus_10214#0 ACAACTGAACAAAATTAGCTACTCAATCTTATCCATGAGAACTTTGCCTGAATCATGGTT 899
consensus_10214#1 AGGCTGCAGCACCACCACCGGCAGCAGCAGCAGCACAAGATCCA-GCTTCAGCTCTA--- 249
* * ** * * * * * * ** *** * ** * * *
consensus_10214#0 TGATTTGTTGATCTGCAGAGAATGCAGCAGGTTGTGCAGCAGACATCAAGGCTGAACCAG 959
consensus_10214#1 -----TGGCGATGACAAGAGAATGCAGCAGGTTGTGCAGCAGACATCAAGGCTGAACCAG 304
** *** ********************************************
consensus_10214#0 GCAATGTCATCTGTGATGGGAGGGGGTGGCTCAACTAGGGCAAACATATCGTTTGGTGGC 1019
consensus_10214#1 GCAATGTCATCTGTGATGGGAGGGGGTGGCTCAACTAGGGCAAACATATCGTTTGGTGGC 364
************************************************************
consensus_10214#0 TACTATGAGGGCTTTTGATCAACCAATTAATTATTACAATGTGTATGGTCAAGTACAATT 1079
consensus_10214#1 TACTATGAGGGCTTTTGATCAACCAATTAATTATTACAATGTGTATGGTCAAGTACAATT 424
************************************************************
consensus_10214#0 AAAGTTGCCATTGTAGCAAGTAGCAACTTAATTTGATATGGCACCCTACTCCCTAGTGGC 1139
consensus_10214#1 AAAGTTGCCATTGTAGCAAGTAGCAACTTAATTTGATATGGCACCCTACTCCCTAGTGGC 484
************************************************************
consensus_10214#0 CTTCATATATGCTGCAATCACCTTAGCTATGTGTTTACTACGTGTACACTAGATGTAAAT 1199
consensus_10214#1 CTTCATATATGCTGCAATCACCTTAGCTATGTGTTTACTACGTGTACACTAGATGTAAAT 544
************************************************************
consensus_10214#0 AATTGGGTTCTTAGACCTTAGCACATATAGATGATGAGGATGGAATTATAGATTTATTAA 1259
consensus_10214#1 AATTGGGTTCTTAGACCTTAGCACATATAGATGATGAGGATGGAATTATAGATTTATTAA 604
************************************************************
consensus_10214#0 GATGATAGTTAAGGAAAATAACAATTGTTTGACTTGTGCCTGAAGTCAAAAGGGGTTCAT 1319
consensus_10214#1 GATGATAGTTAAGGAAAATAACAATTGTTTGACTTGTGCCTGAAGTCAAAATAGGTTCAT 664
*************************************************** *******
consensus_10214#0 TAATGATGGAGAAGCTACTTTACTGAAAAAAAAGA------------------------- 1354
consensus_10214#1 TAATGATGGAGAAGCTACTTTACTGAAAAAAAGTTGTTTTTGATTGGTGAACTGGTAACA 724
********************************
consensus_10214#0 ----------------------------------
consensus_10214#1 TAACTGAACCAGTTGGTGGTTTTCNNNNNNNNNN 758
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||