cluster # 10216

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Oryza sativa
cluster # 10216 cluster # 10216 Sequences # 7 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10216#0 length = 1170 sequences # 3
consensus_10216#1 length = 701 sequences # 1

consensus_10216#2 length = 659 sequences # 1
consensus_10216#3 length = 419 sequences # 1
consensus_10216#4 length = 162 sequences # 1

consensusID : consensus_10216#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1170
fasta sequence

                              [CCTATCTAAGCAAGGGATTAGTGTGTATATGTTGTCTGGGGACAAGAAAAGTGCTGCTATGAATGTAGCTTCACTTGTTGGTATCCAGGCAGACAAGGTCATTGCTGAAGTTAAACCACATGAGAAGAAGAGTTTCATATCTAAACTTCAAAAAGAGCACAAGCTAGTTGCCATGGTCGGTGATGGCATCAATGATGCTGCAGCACTAGCTTCAGCTGATGTTGGCATTGCTATGGGTGGAGGTGTTGGTGCGGCTAGTGATGTGTCTTCAGTTGTGCTTATGGGCAATAGATTATCTCAGCTTGTTGATGCTTTAGAGTTGAGTAAAGAGACCATGAGGACAGTGAAGCAAAATCTTTGGTGGGCTTTTCTGTACAACATTGTTGGACTACCCATCGCTGCTGGGGCATTGCTGCCAGTTACAGGTACGGTGCTGACCCCGTCGATAGCTGGAGCTCTAATGGGTTTTAGTTCTGTCGGCGTAATGGCCAACTCACTGTTCTTGAGAATGAGGTTGAGTTCAAGGCAGCAACCAATCCATAAGCCACAGGCGACCATTTCTGATGTATTACCCAACGCAGCCGAGTCAGAGAAAAGTTATCCATCAAAATGGAGTGCCTAGCTGACATCCATTTCTTCATGACCGGCTGACCTGCTTTGCCTTAAAGAGNTCATAGCAGTAACACGCGTCGCAGAGAAAACACAGTAATTTGGCCCGGAACTGGATGTCGNGATAGGTAGTCCTGTCTCGGAGATCAGATGCAGTCTTAAGAACCAAAGAATAATCAGATAAAGCACAGGGTTAGGAGAGTTCAGCTGCCGCGTGTTGGTGTTTTTT-T-TTTCTTTGAAAAGAGTATTGAGTATGCTAGTATACAGGTACAGGCCGATACTTCACACACGAGGGCAACATCCTCTCCGATATGTGGTACTTCTTTCATGCATAGTA-TTTGCTATGCTGTAACGTTTTTCCTCTGATAAAAA-ACACTATTGACGAGTGAAATGACGGTCCGCGTACCAGAACTCATGTGGTGGCGTCTCTTAGATACTGTGTAGAGTCGATACTCTTCTGAATTCATTCTCAATTGTTAACCATGGTGATTCGCACAGTTGCACTCATTGTGGTAATCAGATTAAGAGAGAATCGTGCAATTTGTTAAGCTAAAAAAAAAA]

[+] EMBL CA765993             [CCTATCTAAGCAAGGGATTAGTGTGTATATGTTGTCTGGGGACAAGAAAAGTGCTGCTATGAATGTAGCTTCACTTGTTGGTATCCAGGCAGACAAGGTCATTGCTGAAGTTAAACCACATGAGAAGAAGAGTTTCATATCTAAACTTCAAAAAGAGCACAAGCTAGTTGCCATGGTCGGTGATGGCATCAATGATGCTGCAGCACTAGCTTCAGCTGATGTTGGCATTGCTATGGGTGGAGGTGTTGGTGCGGCTAGTGATGTGTCTTCAGTTGTGCTTATGGGCAATAGATTATCTCAGCTTGTTGATGCTTTAGAGTTGAGTAAAGAGACCATGAGGACAGTGAAGCAAAATCTTTGGTGGGCTTTTCTGTACAACATTGTTGGACTACCCATCGCTGCTGGGGCATTGCTGCCAGTTACAGGTACGGTGCTGACCCCGTCGATAGCTGGAGCTCTAATGGGTTTTAGTTCTGTCGGCGTAATGGCCAACTCACTGTTCTTGAGAATGAGGTTGAGTTCAAGGCAGCAACCAATCCATAAGCCACAGGCGACCATTTCTGATGTATTACCCAACGCAGCCGAGTCAGAGAAAAGTTATCCATCAAAATGGAGTGCCTAGCTGACATCCATTTCTTCATGACCGGCTGACCTGCTTTGCCTTAAAGAGNTCATAGCAGTAACACGCGTCGCAGAGAAAACACAGTAATTTGGCCCGGAACTGGATGTCGNGATAGGTAGTCCTGTCTCGGAGATCAGATGCAGTCTTAAGAACCAAAGAATAATCAGATTAAGCNCAGGGTTAGGANAGTTCANCTGNCG                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK059217             [                          ATATGTTGTCTGGGGACAAGAAAAGTGCTGCTATGAATGTAGCTTCACTTGTTGGTATCCAGGCAGACAAGGTCATTGCTGAAGTTAAACCACATGAGAAGAAGAGTTTCATATCTGAACTTCAAAAAGAGCACAAGCTAGTTGCCATGGTCGGTGATGGCATCAATGATGCTGCAGCACTAGCTTCAGCTGATGTTGGCATTGCTATGGGTGGAGGTGTTGGTGCGGCTAGTGATGTGTCTTCAGTTGTGCTTATGGGCAATAGATTATCTCAGCTTGTTGATGCTTTAGAGTTGAGTAAAGAGACCATGAGGACAGTGAAGCAAAATCTTTGGTGGGCTTTTCTGTACAACATTGTTGGACTACCCATCGCTGCTGGGGCATTGCTGCCAGTTACAGGTACGGTGCTGACCCCGTCGATAGCTGGAGCTCTAATGGGTTTTAGTTCTGTCGGCGTAATGGCCAACTCACTGTTCTTGAGAATGAGGTTGAGTTCAAGGCAGCAACCAATCCATAAGCCACAGGCGACCATTTCTGATGTATTACCCAACGCAGCCGAGTCAGAGAAAAGTTATCCATCAAAATGGAGTGCCTAGCTGACATCCATTTCTTCATGACCGGCTGACCTGCTTTGCCTTAAAGAGTTCATAGCAGTAACACGCGTCGCAGAGAAAACACAGTAATTTGGCCCGGAACTGGATGTCGTGATAGGTAGTCCTGTCTCGGAGATCAGATGCAGTCATAAGAACAAAAGAATAATCAGATAAAGCACAGGGTTAGGAGAGTTCAGCTGCCGCGTGTTGGTGTTTTTT T TTTCTTTGAAAAGAGTATTGAGTATGCTAGTATACAGGTACAGGCCGATACTTCACACACGAGGGCAACATCCTCTCCGATATGTGGTACTTCTTTCATGCATAGTA TTTGCTATGCTGTAACGTTTTTCCTCTGATAAAAA ACACTATTGACGAGTGAAATGACGGTCCGCGTACCAGAACTCATGTGGTGGCGTCTCTTAGATACTGTGTAGAGTCGATACTCTTCTGAATTCATTCTCAATTGTTAACCATGG                                                                           ]
[+] EMBL BI807931             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AAAGCACAGGGTTAGGAGAGTTCAGCTGCCGCGTGTTGGTGTTTTTTGTGTTTCTTTGAAAAGAGTATTGAGTATGCTAGTATACAGGTACA GCCGATACTTCACACACGAGGGCAACATCCTCTCCGATATGTGGTACTTCTTTCATGCATAGTATTTTGCTATGCTGTAACGTTTTTCCTCTGATAAAAACAC CTATTGACGAGTGAAATGACGGTCCGCGTACCAGAACTCATGTGGTGGCGTCTCTTAGATACTGTGTAGAGTCGATACTCTTCTGAATTCATTCTCAATTGTTAACCATGGTGATTCGCACAGTTGCACTCATTGTGGTAATCAGATTAAGAGAGAATCGTGCAATTTGTTAAGCTAAAAAAAAAA]




>consensus_10216#0
CCTATCTAAGCAAGGGATTAGTGTGTATATGTTGTCTGGGGACAAGAAAAGTGCTGCTAT
GAATGTAGCTTCACTTGTTGGTATCCAGGCAGACAAGGTCATTGCTGAAGTTAAACCACA
TGAGAAGAAGAGTTTCATATCTAAACTTCAAAAAGAGCACAAGCTAGTTGCCATGGTCGG
TGATGGCATCAATGATGCTGCAGCACTAGCTTCAGCTGATGTTGGCATTGCTATGGGTGG
AGGTGTTGGTGCGGCTAGTGATGTGTCTTCAGTTGTGCTTATGGGCAATAGATTATCTCA
GCTTGTTGATGCTTTAGAGTTGAGTAAAGAGACCATGAGGACAGTGAAGCAAAATCTTTG
GTGGGCTTTTCTGTACAACATTGTTGGACTACCCATCGCTGCTGGGGCATTGCTGCCAGT
TACAGGTACGGTGCTGACCCCGTCGATAGCTGGAGCTCTAATGGGTTTTAGTTCTGTCGG
CGTAATGGCCAACTCACTGTTCTTGAGAATGAGGTTGAGTTCAAGGCAGCAACCAATCCA
TAAGCCACAGGCGACCATTTCTGATGTATTACCCAACGCAGCCGAGTCAGAGAAAAGTTA
TCCATCAAAATGGAGTGCCTAGCTGACATCCATTTCTTCATGACCGGCTGACCTGCTTTG
CCTTAAAGAGNTCATAGCAGTAACACGCGTCGCAGAGAAAACACAGTAATTTGGCCCGGA
ACTGGATGTCGNGATAGGTAGTCCTGTCTCGGAGATCAGATGCAGTCTTAAGAACCAAAG
AATAATCAGATAAAGCACAGGGTTAGGAGAGTTCAGCTGCCGCGTGTTGGTGTTTTTTTT
TTCTTTGAAAAGAGTATTGAGTATGCTAGTATACAGGTACAGGCCGATACTTCACACACG
AGGGCAACATCCTCTCCGATATGTGGTACTTCTTTCATGCATAGTATTTGCTATGCTGTA
ACGTTTTTCCTCTGATAAAAAACACTATTGACGAGTGAAATGACGGTCCGCGTACCAGAA
CTCATGTGGTGGCGTCTCTTAGATACTGTGTAGAGTCGATACTCTTCTGAATTCATTCTC
AATTGTTAACCATGGTGATTCGCACAGTTGCACTCATTGTGGTAATCAGATTAAGAGAGA
ATCGTGCAATTTGTTAAGCTAAAAAAAAAA

consensusID : consensus_10216#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 701
fasta sequence

                              [AGACCATGAGGACAGTGAAGCAAAATCTTTGGTGGGCTTTTTTGTACAACATTGTTGGACTACCCATCGCTGCTGGGGCATTGCTGCCAGTTACAGGTACGGTGCTGACCCCGTCGATAGCTGGAGCTCTAATGGGTTTTAGTTCTGTCGGCGTAATGGCCAACTCACTGTTTTTGAGAATGAGGTTGAGTTCAAGGCAGCAACCAATCCATAAGCCCCAGGGGGCCATTTTTGATGTATTACCCAACGCAGCCGAGTCAGAGAAAAGTTATCCATCAAAATGGAGTGCCTAGCTGACATCCATTTTTTCATGACCGGGTGACCTGCTTTGCCTTAAAGAGTTCATAGCAGTAACCCGCGTCGCAGAGAAAACCCAGTAATTTGGCCCGGAACTGGATGTCGTGATAGGTAGTCCTGTTTCGGAGATCAGATGCAGTCATAAGAACAAAAGAATAATCAGATAAAGCCCAGGGTTAGGAGAGTTCAGCTGCCGCGTGTTGGTGTTTTTTTTTTTTTTGAAAAGAGTATTGAGTATGCTAGTATACAGGTACAGGCCGATACTTCCCCCCCGAGGGCAACATCCTTTGGGATAAGTGGTACTTCTTTCATGCATAGTATTTGCTATGCTGTAACGTTTTTCCTCTGATAGAAAACCCTAGGGCGAGTGAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAGGA]

[-] EMBL CB632785             [AGACCATGAGGACAGTGAAGCAAAATCTTTGGTGGGCTTTTTTGTACAACATTGTTGGACTACCCATCGCTGCTGGGGCATTGCTGCCAGTTACAGGTACGGTGCTGACCCCGTCGATAGCTGGAGCTCTAATGGGTTTTAGTTCTGTCGGCGTAATGGCCAACTCACTGTTTTTGAGAATGAGGTTGAGTTCAAGGCAGCAACCAATCCATAAGCCCCAGGGGGCCATTTTTGATGTATTACCCAACGCAGCCGAGTCAGAGAAAAGTTATCCATCAAAATGGAGTGCCTAGCTGACATCCATTTTTTCATGACCGGGTGACCTGCTTTGCCTTAAAGAGTTCATAGCAGTAACCCGCGTCGCAGAGAAAACCCAGTAATTTGGCCCGGAACTGGATGTCGTGATAGGTAGTCCTGTTTCGGAGATCAGATGCAGTCATAAGAACAAAAGAATAATCAGATAAAGCCCAGGGTTAGGAGAGTTCAGCTGCCGCGTGTTGGTGTTTTTTTTTTTTTTGAAAAGAGTATTGAGTATGCTAGTATACAGGTACAGGCCGATACTTCCCCCCCGAGGGCAACATCCTTTGGGATAAGTGGTACTTCTTTCATGCATAGTATTTGCTATGCTGTAACGTTTTTCCTCTGATAGAAAACCCTAGGGCGAGTGAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAGGA]




>consensus_10216#1
AGACCATGAGGACAGTGAAGCAAAATCTTTGGTGGGCTTTTTTGTACAACATTGTTGGAC
TACCCATCGCTGCTGGGGCATTGCTGCCAGTTACAGGTACGGTGCTGACCCCGTCGATAG
CTGGAGCTCTAATGGGTTTTAGTTCTGTCGGCGTAATGGCCAACTCACTGTTTTTGAGAA
TGAGGTTGAGTTCAAGGCAGCAACCAATCCATAAGCCCCAGGGGGCCATTTTTGATGTAT
TACCCAACGCAGCCGAGTCAGAGAAAAGTTATCCATCAAAATGGAGTGCCTAGCTGACAT
CCATTTTTTCATGACCGGGTGACCTGCTTTGCCTTAAAGAGTTCATAGCAGTAACCCGCG
TCGCAGAGAAAACCCAGTAATTTGGCCCGGAACTGGATGTCGTGATAGGTAGTCCTGTTT
CGGAGATCAGATGCAGTCATAAGAACAAAAGAATAATCAGATAAAGCCCAGGGTTAGGAG
AGTTCAGCTGCCGCGTGTTGGTGTTTTTTTTTTTTTTGAAAAGAGTATTGAGTATGCTAG
TATACAGGTACAGGCCGATACTTCCCCCCCGAGGGCAACATCCTTTGGGATAAGTGGTAC
TTCTTTCATGCATAGTATTTGCTATGCTGTAACGTTTTTCCTCTGATAGAAAACCCTAGG
GCGAGTGAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAGGA

consensusID : consensus_10216#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 659
fasta sequence

                              [GCTGGGGCATTGCTGCCAGTTACAGGTACGGTGCTGACCCCGTCGATAGCTGGAGCTCTAATGGGTTTTAGTTCCGTNGGCGTAATGGCCAACTCACTGTTCTTGAGAATGAGGTTGAGTTCAAGGCAGCAACCAATCCATAAGCCACAGGCGCCCATTTTTGATGTATTACCCAACGCAGCCGAGTCAGAGAAAAGTTATCCATCAAAATGGAGTGCCTAGCTGACATCCATTTTTTCATGACCGGGTGACCTGCTTTGCCTTAAAGAGTTTATAGCAGTAACACGCGTCGCAGAGAAAACCCAGTAATTTGGCCCGGAACTGGAAGTCGTGATAGGTAGTCCTGTCTCGGAGATCAGATGCAGTCATAAGAACAAAAGAATAATCAGATAAAGCCCAGGGTTAGGAGAGTTCAGCTGCCGCGTGTTGGTGTTTTTTTTTCTTTGAAAAGAGTATTGAGTATGCTAGTATACAGGTACAGGCCGATACTTCACACACGAGGGCAACATCCTTTCCGATATGTGGTACTTCTTTCATGCATAGTATTTGCTATGCTGTAACGTTTTTCCTTTGATAAAAAACCCTATTGACGAGTGAAATGACGGTCCGCGTACCAGAACTCATGTGGTGGCGTCTCTTAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA760373             [GCTGGGGCATTGCTGCCAGTTACAGGTACGGTGCTGACCCCGTCGATAGCTGGAGCTCTAATGGGTTTTAGTTCCGTNGGCGTAATGGCCAACTCACTGTTCTTGAGAATGAGGTTGAGTTCAAGGCAGCAACCAATCCATAAGCCACAGGCGCCCATTTTTGATGTATTACCCAACGCAGCCGAGTCAGAGAAAAGTTATCCATCAAAATGGAGTGCCTAGCTGACATCCATTTTTTCATGACCGGGTGACCTGCTTTGCCTTAAAGAGTTTATAGCAGTAACACGCGTCGCAGAGAAAACCCAGTAATTTGGCCCGGAACTGGAAGTCGTGATAGGTAGTCCTGTCTCGGAGATCAGATGCAGTCATAAGAACAAAAGAATAATCAGATAAAGCCCAGGGTTAGGAGAGTTCAGCTGCCGCGTGTTGGTGTTTTTTTTTCTTTGAAAAGAGTATTGAGTATGCTAGTATACAGGTACAGGCCGATACTTCACACACGAGGGCAACATCCTTTCCGATATGTGGTACTTCTTTCATGCATAGTATTTGCTATGCTGTAACGTTTTTCCTTTGATAAAAAACCCTATTGACGAGTGAAATGACGGTCCGCGTACCAGAACTCATGTGGTGGCGTCTCTTAAAAAAAAAAAAAAAAAAAA]




>consensus_10216#2
GCTGGGGCATTGCTGCCAGTTACAGGTACGGTGCTGACCCCGTCGATAGCTGGAGCTCTA
ATGGGTTTTAGTTCCGTNGGCGTAATGGCCAACTCACTGTTCTTGAGAATGAGGTTGAGT
TCAAGGCAGCAACCAATCCATAAGCCACAGGCGCCCATTTTTGATGTATTACCCAACGCA
GCCGAGTCAGAGAAAAGTTATCCATCAAAATGGAGTGCCTAGCTGACATCCATTTTTTCA
TGACCGGGTGACCTGCTTTGCCTTAAAGAGTTTATAGCAGTAACACGCGTCGCAGAGAAA
ACCCAGTAATTTGGCCCGGAACTGGAAGTCGTGATAGGTAGTCCTGTCTCGGAGATCAGA
TGCAGTCATAAGAACAAAAGAATAATCAGATAAAGCCCAGGGTTAGGAGAGTTCAGCTGC
CGCGTGTTGGTGTTTTTTTTTCTTTGAAAAGAGTATTGAGTATGCTAGTATACAGGTACA
GGCCGATACTTCACACACGAGGGCAACATCCTTTCCGATATGTGGTACTTCTTTCATGCA
TAGTATTTGCTATGCTGTAACGTTTTTCCTTTGATAAAAAACCCTATTGACGAGTGAAAT
GACGGTCCGCGTACCAGAACTCATGTGGTGGCGTCTCTTAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_10216#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence

                              [TTAGTTTTGTCGGGGTAAAGGCCAACTCCCTGTTTTTGAGAAAGAGGTTGAGTTTAAGGCAGCAACCAATCCATAAGCCCCAGGGGGCCCTTTTTGATGTATTTCCCCACCCAGCCGGGTCAGAGAAAAATTTTCCCTCAAAAAGGAGGGCCTAGGTGACATCCATTTTTTCATGACCGGGTGACCTGCTTTTCCTTAAAGAGTTTATAGCAGTAACCCGCGTTGCAGAGAAAACCCAGTAATTTGGCCCGGAACTGGAAGTTGGGATAGGTAGTCCCGTTTTGGAGATCAGATGCCGTCATAAGAACAAAAGAATAATCAGATAAAGCCCCGGGTTAGGGGAGTTCAGCTCCCCCGGGTTGGGGTTTTTTTTTTTTTGAAAAGAGTATTGAGTATGTTAGTATACAGGTACAGGCCGA]

[-] EMBL CB627391             [TTAGTTTTGTCGGGGTAAAGGCCAACTCCCTGTTTTTGAGAAAGAGGTTGAGTTTAAGGCAGCAACCAATCCATAAGCCCCAGGGGGCCCTTTTTGATGTATTTCCCCACCCAGCCGGGTCAGAGAAAAATTTTCCCTCAAAAAGGAGGGCCTAGGTGACATCCATTTTTTCATGACCGGGTGACCTGCTTTTCCTTAAAGAGTTTATAGCAGTAACCCGCGTTGCAGAGAAAACCCAGTAATTTGGCCCGGAACTGGAAGTTGGGATAGGTAGTCCCGTTTTGGAGATCAGATGCCGTCATAAGAACAAAAGAATAATCAGATAAAGCCCCGGGTTAGGGGAGTTCAGCTCCCCCGGGTTGGGGTTTTTTTTTTTTTGAAAAGAGTATTGAGTATGTTAGTATACAGGTACAGGCCGA]




>consensus_10216#3
TTAGTTTTGTCGGGGTAAAGGCCAACTCCCTGTTTTTGAGAAAGAGGTTGAGTTTAAGGC
AGCAACCAATCCATAAGCCCCAGGGGGCCCTTTTTGATGTATTTCCCCACCCAGCCGGGT
CAGAGAAAAATTTTCCCTCAAAAAGGAGGGCCTAGGTGACATCCATTTTTTCATGACCGG
GTGACCTGCTTTTCCTTAAAGAGTTTATAGCAGTAACCCGCGTTGCAGAGAAAACCCAGT
AATTTGGCCCGGAACTGGAAGTTGGGATAGGTAGTCCCGTTTTGGAGATCAGATGCCGTC
ATAAGAACAAAAGAATAATCAGATAAAGCCCCGGGTTAGGGGAGTTCAGCTCCCCCGGGT
TGGGGTTTTTTTTTTTTTGAAAAGAGTATTGAGTATGTTAGTATACAGGTACAGGCCGA

consensusID : consensus_10216#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 162
fasta sequence

                              [AAGAGTATTGGTATGCTAGTATACAGGTACAGGCCGATACTTCACACACGAGGGCAACATCCTCTCCGATATGTGGTACTTCTTTCATGCATAGTATTTGCTATGCTGTAACGTTTTTCCTCTGATAAAAACACTATTGACGAGTGAATGACAAAAAAAAAA]

[-] EMBL D42225               [AAGAGTATTGGTATGCTAGTATACAGGTACAGGCCGATACTTCACACACGAGGGCAACATCCTCTCCGATATGTGGTACTTCTTTCATGCATAGTATTTGCTATGCTGTAACGTTTTTCCTCTGATAAAAACACTATTGACGAGTGAATGACAAAAAAAAAA]




>consensus_10216#4
AAGAGTATTGGTATGCTAGTATACAGGTACAGGCCGATACTTCACACACGAGGGCAACAT
CCTCTCCGATATGTGGTACTTCTTTCATGCATAGTATTTGCTATGCTGTAACGTTTTTCC
TCTGATAAAAACACTATTGACGAGTGAATGACAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10216#0      CCTATCTAAGCAAGGGATTAGTGTGTATATGTTGTCTGGGGACAAGAAAAGTGCTGCTAT 60
consensus_10216#4      ------------------------------------------------------------
consensus_10216#2      ------------------------------------------------------------
consensus_10216#1      ------------------------------------------------------------
consensus_10216#3      ------------------------------------------------------------
                                                                                   

consensus_10216#0      GAATGTAGCTTCACTTGTTGGTATCCAGGCAGACAAGGTCATTGCTGAAGTTAAACCACA 120
consensus_10216#4      ------------------------------------------------------------
consensus_10216#2      ------------------------------------------------------------
consensus_10216#1      ------------------------------------------------------------
consensus_10216#3      ------------------------------------------------------------
                                                                                   

consensus_10216#0      TGAGAAGAAGAGTTTCATATCTAAACTTCAAAAAGAGCACAAGCTAGTTGCCATGGTCGG 180
consensus_10216#4      ------------------------------------------------------------
consensus_10216#2      ------------------------------------------------------------
consensus_10216#1      ------------------------------------------------------------
consensus_10216#3      ------------------------------------------------------------
                                                                                   

consensus_10216#0      TGATGGCATCAATGATGCTGCAGCACTAGCTTCAGCTGATGTTGGCATTGCTATGGGTGG 240
consensus_10216#4      ------------------------------------------------------------
consensus_10216#2      ------------------------------------------------------------
consensus_10216#1      ------------------------------------------------------------
consensus_10216#3      ------------------------------------------------------------
                                                                                   

consensus_10216#0      AGGTGTTGGTGCGGCTAGTGATGTGTCTTCAGTTGTGCTTATGGGCAATAGATTATCTCA 300
consensus_10216#4      ------------------------------------------------------------
consensus_10216#2      ------------------------------------------------------------
consensus_10216#1      ------------------------------------------------------------
consensus_10216#3      ------------------------------------------------------------
                                                                                   

consensus_10216#0      GCTTGTTGATGCTTTAGAGTTGAGTAAAGAGACCATGAGGACAGTGAAGCAAAATCTTTG 360
consensus_10216#4      ------------------------------------------------------------
consensus_10216#2      ------------------------------------------------------------
consensus_10216#1      -----------------------------AGACCATGAGGACAGTGAAGCAAAATCTTTG 31
consensus_10216#3      ------------------------------------------------------------
                                                                                   

consensus_10216#0      GTGGGCTTTTCTGTACAACATTGTTGGACTACCCATCGCTGCTGGGGCATTGCTGCCAGT 420
consensus_10216#4      ------------------------------------------------------------
consensus_10216#2      ----------------------------------------GCTGGGGCATTGCTGCCAGT 20
consensus_10216#1      GTGGGCTTTTTTGTACAACATTGTTGGACTACCCATCGCTGCTGGGGCATTGCTGCCAGT 91
consensus_10216#3      ------------------------------------------------------------
                                                                                   

consensus_10216#0      TACAGGTACGGTGCTGACCCCGTCGATAGCTGGAGCTCTAATGGGTTTTAGTTCTGTCGG 480
consensus_10216#4      ------------------------------------------------------------
consensus_10216#2      TACAGGTACGGTGCTGACCCCGTCGATAGCTGGAGCTCTAATGGGTTTTAGTTCCGTNGG 80
consensus_10216#1      TACAGGTACGGTGCTGACCCCGTCGATAGCTGGAGCTCTAATGGGTTTTAGTTCTGTCGG 151
consensus_10216#3      ------------------------------------------------------------
                                                                                   

consensus_10216#0      CGTAATGGCCAACTCACTGTTCTTGAGAATGAGGTTGAGTTCAAGGCAGCAACCAATCCA 540
consensus_10216#4      ------------------------------------------------------------
consensus_10216#2      CGTAATGGCCAACTCACTGTTCTTGAGAATGAGGTTGAGTTCAAGGCAGCAACCAATCCA 140
consensus_10216#1      CGTAATGGCCAACTCACTGTTTTTGAGAATGAGGTTGAGTTCAAGGCAGCAACCAATCCA 211
consensus_10216#3      ------------------------------------------------------------
                                                                                   

consensus_10216#0      TAAGCCACAGGCGACCATTTCTGATGTATTACCCAACGCAGCCGAGTCAGAGAAAAGTTA 600
consensus_10216#4      ------------------------------------------------------------
consensus_10216#2      TAAGCCACAGGCGCCCATTTTTGATGTATTACCCAACGCAGCCGAGTCAGAGAAAAGTTA 200
consensus_10216#1      TAAGCCCCAGGGGGCCATTTTTGATGTATTACCCAACGCAGCCGAGTCAGAGAAAAGTTA 271
consensus_10216#3      ------------------------------------------------------------
                                                                                   

consensus_10216#0      TCCATCAAAATGGAGTGCCTAGCTGACATCCATTTCTTCATGACCGGCTGACCTGCTTTG 660
consensus_10216#4      ------------------------------------------------------------
consensus_10216#2      TCCATCAAAATGGAGTGCCTAGCTGACATCCATTTTTTCATGACCGGGTGACCTGCTTTG 260
consensus_10216#1      TCCATCAAAATGGAGTGCCTAGCTGACATCCATTTTTTCATGACCGGGTGACCTGCTTTG 331
consensus_10216#3      ------------------------------------------------------------
                                                                                   

consensus_10216#0      CCTTAAAGAGNTCATAGCAGTAACACGCGTCGCAGAGAAAACACAGTAATTTGGCCCGGA 720
consensus_10216#4      ------------------------------------------------------------
consensus_10216#2      CCTTAAAGAGTTTATAGCAGTAACACGCGTCGCAGAGAAAACCCAGTAATTTGGCCCGGA 320
consensus_10216#1      CCTTAAAGAGTTCATAGCAGTAACCCGCGTCGCAGAGAAAACCCAGTAATTTGGCCCGGA 391
consensus_10216#3      ------------------------------------------------------------
                                                                                   

consensus_10216#0      ACTGGATGTCGNGATAGGTAGTCCTGTCTCGGAGATCAGATGCAGTCTTAAGAACCAAAG 780
consensus_10216#4      ------------------------------------------------------------
consensus_10216#2      ACTGGAAGTCGTGATAGGTAGTCCTGTCTCGGAGATCAGATGCAGTCATAAGAACAAAAG 380
consensus_10216#1      ACTGGATGTCGTGATAGGTAGTCCTGTTTCGGAGATCAGATGCAGTCATAAGAACAAAAG 451
consensus_10216#3      --------------------------------------------TTAGTTTTGTCGGGGT 16
                                                                                   

consensus_10216#0      AATAATCAGATAAAGCACAGGGTTAGGAGAGTTCAGCTGCCGCGTGTTGGTGTTTTTTTT 840
consensus_10216#4      ------------------------------------------------------------
consensus_10216#2      AATAATCAGATAAAGCCCAGGGTTAGGAGAGTTCAGCTGCCGCGTGTTGGTGTTTTTTTT 440
consensus_10216#1      AATAATCAGATAAAGCCCAGGGTTAGGAGAGTTCAGCTGCCGCGTGTTGGTGTTTTTTTT 511
consensus_10216#3      AAAGGCCAACTCCCTGTTTTTGAGAAAGAGGTTGAGTTTAAGGCAGCAACCAATCCATAA 76
                                                                                   

consensus_10216#0      TTCTTTGAAAAGAGTATTGAGTATGCTAGTATACAGGTACAGGCCG----ATACTTCACA 896
consensus_10216#4      ---------AAGAGTATTG-GTATGCTAGTATACAGGTACAGGCCG----ATACTTCACA 46
consensus_10216#2      T-CTTTGAAAAGAGTATTGAGTATGCTAGTATACAGGTACAGGCCG----ATACTTCACA 495
consensus_10216#1      TTTTTTGAAAAGAGTATTGAGTATGCTAGTATACAGGTACAGGCCG----ATACTTCCCC 567
consensus_10216#3      GCCCCAGGGGGCCCTTTTTGATGTATTTCCCCACCCAGCCGGGTCAGAGAAAAATTTTCC 136
                                     * **   * *  *     **     * ** *     * * **  * 

consensus_10216#0      CACGAGGGCAACATCCTCTCCGATATGTGGTACTTCTTTCATGCATAGTATTTGCTATGC 956
consensus_10216#4      CACGAGGGCAACATCCTCTCCGATATGTGGTACTTCTTTCATGCATAGTATTTGCTATGC 106
consensus_10216#2      CACGAGGGCAACATCCTTTCCGATATGTGGTACTTCTTTCATGCATAGTATTTGCTATGC 555
consensus_10216#1      CCCGAGGGCAACATCCTTTGGGATAAGTGGTACTTCTTTCATGCATAGTATTTGCTATGC 627
consensus_10216#3      CTCAAAAAGGAGGGCCTAGGTGACATCCATTTTTTCATGACCGGGTG--ACCTGCTTTTC 194
                       * * *     *   ***    ** *     *  *** *    *  *   *  **** * *

consensus_10216#0      TGTAACGTTTTTCCTCTGATAAAAAACACTATTGA------CGAGTGAAATGACGGTCCG 1010
consensus_10216#4      TGTAACGTTTTTCCTCTGATAAAAA-CACTATTGA------CGAGTGAA-TGACAAAAAA 158
consensus_10216#2      TGTAACGTTTTTCCTTTGATAAAAAACCCTATTGA------CGAGTGAAATGACGGTCCG 609
consensus_10216#1      TGTAACGTTTTTCCTCTGATAGAAAACCCTAG-GG------CGAGTGAAAAAAAAAAAAA 680
consensus_10216#3      CTTAAAGAGTTTATAGCAGTAACCCGCGTTGCAGAGAAAACCCAGTAATTTGGCCCGGAA 254
                         *** *  ***       **     *  *   *       * *** *            

consensus_10216#0      CGTACCAGAACTCATGTGGTGGCGTCTCTTAGATACTGTGTAGAGTCGATACTCTTCTGA 1070
consensus_10216#4      AAAA-------------------------------------------------------- 162
consensus_10216#2      CGTACCAGAACTCATGTGGTGGCGTCTCTTAAAAAAAAAAAAAAAAAAAA---------- 659
consensus_10216#1      AAAAAAAAAAAAATAAAAGGA--------------------------------------- 701
consensus_10216#3      CTGGAAGTTGGGATAGGTAGTCCCGTTTTGGAGATCAGATGCCGTCATAAGAACAAAAGA 314
                                                                                   

consensus_10216#0      ATTCATTCTCAATTGTTAACCATGGTGATTCGCACAGTTGCACTCATTGTGGTAATCAGA 1130
consensus_10216#4      ------------------------------------------------------------
consensus_10216#2      ------------------------------------------------------------
consensus_10216#1      ------------------------------------------------------------
consensus_10216#3      ATAATCAGATAAAGCCCCGGGTTAGGGGAGTTCAGCTCCCCCGGGTTGGGGTTTTTTTTT 374
                                                                                   

consensus_10216#0      TTAAGAGAGAATCGTGCAATTTGTTAAGCTAAAAAAAAAA----- 1170
consensus_10216#4      ---------------------------------------------
consensus_10216#2      ---------------------------------------------
consensus_10216#1      ---------------------------------------------
consensus_10216#3      TTTTGAAAAGAGTATTGAGTATGTTAGTATACAGGTACAGGCCGA 419