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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10217#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1240 fasta sequence
[GCCACTCGCCGCCGCCTCCTGCCCCTCGCGCCCCCCGGTCGCGCCCACCTCTCCGCCGCGGCCGCGTCCACCTCCCCCAAAAAACCCTAGCCGCCGCCACCTCTCATCCCACCCTCTCCCTCTCCCGCTGCGTCTGCCTCCCCCTCGCGCCGCCGTCGTCGCCTCCGCCTTCCCCTCGCGCCCGCGCCTCCGCCTTGCAACGTAGCCATCGTCGTCTCCGTCGGCTCGCGCTGCCGCCTCCACCTCCCCCGCCGGTGCCGCCGCCGTCGTCGCGTTGTCGTCTCCGAGCGCCTCCGCCTCCCGCCTCGCGCCGCCGCCGAGCGCAGCCATCCCCGTCTCCGCCACTGCCGTCGGCATCATCGAGCGCCCCCGACTATCGGCCGAGACGGCTAGCTCGGGGAGGGGATGGCTATGGCGCGTCCGTCGACATCGCGCTGCCGCTCCCGGAGATGACGCCCCGCATCATAGGTATCTGCAAGGAATTGGTGAGAGGACGGTCATCGCTAGACAGCTCGCGCTTCTCGATCGAGACGGTGTCTGGCGGCAGCATCACGAATATGTTGCTGAGTGTCTCCGTAGAAGATGGCAAGGGCAACAAGTCTTCTGTGACTGTTCGTTTGTATGGCCCAAATACAGCCTTGGTGATTGATCGGAAGAAGGAAATGCAGGCTATACCACATCTCTCAGCTCCAGGGTTTGGGGTCAGCTACTTGGAACATTTGAAAATGGAATGGTCCAGTCATTCATCTATGCACGTACATTAACTCCTTCAGCAAGGATGTAAATGGAAAAGGTTTCAGGGCCAATGGGAGTGAATCATCGAATAGACAGCCAAAGGACAAAGGATTCTCATGAAAAACAAGGATTTCAGCTTACAAGAGGTGCTTGAATGCACCGCGGAGTGTATTTTCACATTTTGTTGGAGAAATAATTGAGGCAATGGCTGGACATATACCCCTACAGTAATCATGGGAAAGCTATTATCTGACAACGGGAGTCAAGAGTTCGGTGATTTTAAGCTCGTTATACATAGAATGCTGTCTGTATCTTTATGAAAAAAGAATGCTGTTATGTCCATATTGATTTTATCCCATATGCAATTTACTTGCTGCTATAGCAGATCAGCAATGCTTTAGGCTTTTCCATGCTGCTGTAATGTAAAATCATTAGGAAATTCCCGAAGTACACATCGCTTACAATGATTGACAGACTTAGTGTTGTTTTAAATTGAACGCTTGTT]
[+] EMBL CB630215 [GCCACTCGCCGCCGCCTCCTGCCCCTCGCGCCCCCCGGTCGCGCCCACCTCTCCGCCGCGGCCGCGTCCACCTCCCCCAAAAAACCCTAGCCGCCGCCACCTCTCATCCCACCCTCTCCCTCTCCCGCTGCGTCTGCCTCCCCCTCGCGCCGCCGTCGTCGCCTCCGCCTTCCCCTCGCGCCCGCGCCTCCGCCTTGCAACGTAGCCATCGTCGTCTCCGTCGGCTCGCGCTGCCGCCTCCACCTCCCCCGCCGGTGCCGCCGCCGTCGTCGCGTTGTCGTCTCCGAGCGCCTCCGCCTCCCGCCTCGCGCCGCCGCCGAGCGCAGCCATCCCCGTCTCCGCCACTGCCGTCGGCATCATCGAGCGCCCCCGACTATCGGCCGAGACGGCTAGCTCGGGGAGGGGATGGCTATGGCGCGTCCGTCGACATCGCGCTGCCGCTCCCGGAGATGACGCCCCGCATCATAGGTATCTGCAAGGAATTGGTGAGAGGACGGTCATCGCTAGACAGCTCGCGCTTCTCGATCGAGACGGTGACTGGCGGCAGCATCACGAATATGTTGCTGAGTGTCTCCGTATAAGATGGCAAGGGCAACAAGTCTTCTGTGACTGTTCGGTTGTATGGCCCAAATACAGCCTTGGTGATTGATCGGAAGAAGGAAATGCAGGCTATACCACATCTCTCAGCTCCAGGGTTTGGGGTCAGCTACTTGGAACATTTGAA ]
[+] EMBL CB657186 [ CTCATCCCACCCTCTCCCTCTCCCGCTGCGTCTGCCTCCCCCTCGCGCCGCCGTCGTCGCCTCCGCCTTCCCCTCGCGCCCCCGCCTCCGCCTTGCAACGTAGCCATCGTCGTCCCCGTCGGCTCGCGCTGCCGCCTCCACCTCCCCCGCCGCTGCCGCCGCCGTCGTCGCGTTGTCGTCTCCGAGCGCCTCCGCCTCCCGCCTCGCGCCGCCGCCGAGCGCAGCCATCCCCGTCTCCGCCACTGCCGTCGGCATCATCGAGCGCCCCCGACTAGCGGCCGAGACGGCGAGCTCGGGGAGGCGATGGCTAGGGCGCGTCCGTCGACATCGCGCTGCCGCTCCCGGAGATGACGCCCCGCATCATAGGTATCTGCAAGGAATTGGTGAGAGGACGGTCATCGCTAGACAGCTCGCGCTTCTCGATCGAGACGGTGTCTGGCGGCAGCATCACGAATATGTTGCTGAGTGTCTCCGTAGAAGATGGCAAGGGCAACAAGTCTTCTGTGACTGTTCGTTTGTATGGCCCAAATACAGCCTTGGTGATTGATCGGAAGAAGGAAATGCAGGCTATACCACATCTCTCAGCTCCAGGGTTTGGGGTCAGCTACTTGGAACATTTGAAAATGGAATGGTCCAGTCATTCATCTATGCACGTACATTAACTCCTTCAGCAAGGATGTAAATGGAAAAGGTTTCAGGGCCAATGGGAGTGAATCATCGAATAGACAGCCAAAGGACAAAGGATTCTCATGAAAAACAAGGATTTCAGCTTACAAGAGGTGCTTG ]
[-] EMBL CB657187 [ CCCGCATCATAGGTATCTGCAAGGAATTGGTGAGAGGACGGTCATCGCTAGACAGCTCGCGCTTCTCGATCGAGACGGTGTCTGGCGGCAGCATCACGAATATGTTGCTGAGTGTCTCCGTAGAAGATGGCAAGGGCAACAAGTCTTCTGTGACTGTTCGTTTGTATGGCCCAAATACAGCCTTGGTGATTGATCGGAAGAAGGAAATGCAGGCTATACCACATCTCTCAGCTCCAGGGTTTGGGGTCAGCTACTTGGAACATTTGAAAATGGAATGGTCCAGTCATTCATCTATGCACGTACATTAACTCCTTCAGCAAGGATGTAAATGGAAAAGGTTTCAGGGCCAATGGGAGTGAATCATCGAATAGACAGCCAAAGGACAAAGGATTCTCATGAAAAACAAGGATTTCAGCTTACAAGAGGTGCTTGAATGCACCGCGGAGTGTATTTTCACATTTTGTTGGAGAAATAATTGAGGCAATGGCTGGACATATACCCCTACAGTAATCATGGGAAAGCTATTATCTGACAACGGGAGTCAAGAGTTCGGTGATTTTAAGCTCGTTATACATAGAATGCTGTCTGTATCTTTATGAAAAAAGAATGCTGTTATGTCCATATTGATTTTATCCCATATGCAATTTACTTGCTGCTATAGCAGATCAGCAATGCTTTAGGCTTTTCCATGCTGCTGTAATGTAAAATCATTAGGAAATTCCCGAAGTACACATCGCTTACAATGATTGACAGACTTAGTGTTGTTTTAAATTGAACGCTTGTT]
consensusID : consensus_10217#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 751 fasta sequence
[GACCACATCGAGCGAGCCGCCGAGCCGGACTCCTCCTCGAATCGAATCGAAACGCCCCCGATTTGAAGCAGCAAAAAGATATCCGAAATCGAATCGAGTCGAGTACTCGAGTGACGCCTTCGCCTCGGGTGTCCAGGAATAGCTCGAGCTTCCGCCACGCCACGCGCGAGGGAAGGAGCGGGTCGCGCGGGGGAGGGGGGGCATGGGATCGGAGGGGCGGANTGGAGCGGGGCGGCGGCGGTGGGGGGCGGCGTGGAAGGGGAGGCGGCGATCGCGGCGGTGGTGGCGCCTNCGCCGGGGGACGTGCCGGCGTCGGGCGCGTCCGTGGACATAGCGCTGCCGCTCCCGGAGATGACGCCCCGCATCATAGGTATCTGCAAGGAATTGGTGAGGGGGTGGTCATCGCTGGACAGCTCGCGCTTCTCGATCGAGACGGTGTCTGGCGGCATCACGAATATGTTGCTGAANGTGTCCGCAGAAGATGGCAAGGGTAACAAGTCTTCTGTGACAGTTCGTTTGTATGGCCCAAATACAGACTTGGTGATTGATCGGAAGAGGGAATTGCAGGCTATACCACATCTCTCAGCTGCAGGGTTTGGGGCTCAGCTACTTGGAACATTTGAAAATGGAATGGTCCAGTCATTCATCTATGCACGAACATTAACTCCTTCAGACATGAAGGAACCTAGAATAGCAGCTGAAGATTGCCAAAGAGATTCGCAGATTCCATCAAGTTGATATACCAGGATCA]
[+] EMBL AU062514 [GACCACATCGAGCGAGCCGCCGAGCCGGACTCCTCCTCGAATCGAATCGAAACGCCCCCGATTTGAAGCAGCAAAAAGATATCCGAAATCGAATCGAGTCGAGTACTCGAGTGACGCCTTCGCCTCGGGTGTCCAGGAATAGCTCGAGCTTCCGCCACGCCACGCGCGAGGGAAGGAGCGGGTCGCGCGGGGGAGGGGGGGCATGGGATCGGAGGGGCGGANTGGAGCGGGGCGGCGGCGGTGGGGGGCGGCGTGGAAGGGGAGGCGGCGATCGCGGCGGTGGTGGCGCCTNCGCCGGGGGA ]
[+] EMBL AU163603 [ TGACGCCTTCGCCTCGGGTGTCCAGGAATAGCTCGAGCTTCCGCCACGCCACGCGCGAGGGAAGGAGCGGGTCGCGCGGGGGAGGGGGGGCATGGGATCGGAGGGGCGGACTGGAGCGGGGCGGCGGCGGTGGGGGGCGGCGTGGAAGGGGAGGCGGCGATCGCGGCGGTGGTGGCGCCTGCG CGGGGGACGTGCCGGCGTCGGGCGCGTCCGTGGACATAGCGCTGCCGCTCCCGGAGATGACGCCCCGCATCATAGGTATCTGCAAGGAATTGGTGAGGGGGTGGTCATCGCTGGACAGCTCGCGCTTCTCGATCGAGACGGTGTCTGGCGGCATCACGAATATGTTGCTGAANGTGTCCGCAG ]
[+] EMBL AU030345 [ TGGTCATCGCTGGACAGCTCGCGCTTCTCGATCGAGACGGTGTCTGGCGGCATCACGAATATGTTGCTGAAGGTGTCCGCAGAAGATGGCAAGGGTAACAAGTCTTCTGTGACAGTTCGTTTGTATGGCCCAAATACAGACTTGGTGATTGATCGGAAGAGGGAATTGCAGGCTATACCACATCTCTCAGCTGCAGGGTTTGGGGCTCAGCTACTTGGAACATTTGAAAATGGAATGGTCCAGTCATTCATCTATGCACGAACATTAACTCCTTCAGACATGAAGGAACCTAGAATAGCAGCTGAAGATTGCCAAAGAGATTCGCAGATTCCATCAAGTTGATATACCAGGATCA]
consensusID : consensus_10217#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 737 fasta sequence
[CCTTCAGGCAATCATATTGCTGTTATTCGTGGATGGGGTGGGCTCTTTCTCACTGTTATATTGTCTAATATCATCTTTCTCTTTTTTCATTTTTTGTCCATTGTGAATTCAGACAAAAAAAATTCAAACAAGGCCTTAATTTTTATGATAAATTTTCATTAGATTAATTAGGACTTTCAAAAGGATATAAATCAACCTATAGTATTGGAATTGCGTAAGGCTTTCTTTACAGTCGTGTGATTCGTCACGTTTGTTGCTTGCTGTGGCCATACAAAGATATCCGTCTTGTGTTCTGATAGATGTATTGACATCAATATTGTTATGTTATCAATTCAGCAAGGATGTAAATGGAAAAGGTTTCAGGGCCAATGGGAGTGAATCATCGAATAGACAGCCAAAGGACAAAGGATTCTCATGAAAAACAAGGATTTCAGCTTACAAGAGGTGCTTGAATGCACCGCGGAGTGTATTTTCACATTTTGTTGGAGAAATAATTGAGGCAATGGCTGGACATATACCCCTACAGTAATCATGGGAAAGCTATTATCTGACAACGGGAGTCAAGAGTTCGGTGATTTTAAGCTCGTTATACATAGAATGCTGTCTGTATCTTTATGAAAAAAGAATGCTGTTATGTCCATATTGATTTTATCCCATATGCAATTTACTTGCTGCTATAGCAGATCAGCAATGCTTTAGGCTTTTCCATGCTGCTGTAATGTAAAATCATTAGGAAA]
[+] EMBL AF358774 [CCTTCAGGCAATCATATTGCTGTTATTCGTGGATGGGGTGGGCTCTTTCTCACTGTTATATTGTCTAATATCATCTTTCTCTTTTTTCATTTTTTGTCCATTGTGAATTCAGACAAAAAAAATTCAAACAAGGCCTTAATTTTTATGATAAATTTTCATTAGATTAATTAGGACTTTCAAAAGGATATAAATCAACCTATAGTATTGGAATTGCGTAAGGCTTTCTTTACAGTCGTGTGATTCGTCACGTTTGTTGCTTGCTGTGGCCATACAAAGATATCCGTCTTGTGTTCTGATAGATGTATTGACATCAATATTGTTATGTTATCAATTCAGCAAGGATGTAAATGGAAAAGGTTTCAGGGCCAATGGGAGTGAATCATCGAATAGACAGCCAAAGGACAAAGGATTCTCATGAAAAACAAGGATTTCAGCTTACAAGAGGTGCTTGAATGCACCGCGGAGTGTATTTTCACATTTTGTTGGAGAAATAATTGAGGCAATGGCTGGACATATACCCCTACAGTAATCATGGGAAAGCTATTATCTGACAACGGGAGTCAAGAGTTCGGTGATTTTAAGCTCGTTATACATAGAATGCTGTCTGTATCTTTATGAAAAAAGAATGCTGTTATGTCCATATTGATTTTATCCCATATGCAATTTACTTGCTGCTATAGCAGATCAGCAATGCTTTAGGCTTTTCCATGCTGCTGTAATGTAAAATCATTAGGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10217#0 GCCACTCGCCGCCGCCTCCTGCCCCTCGCGCCCCCCGGTCGCGCCCACCTCTCCGCCGCG 60
consensus_10217#2 ------------------------------------------------------------
consensus_10217#1 ------------------------------------------------------------
consensus_10217#0 GCCGCGTCCACCTCCCCCAAAAAACCCTAGCCGCCGCCACCTCTCATCCCACCCTCTCCC 120
consensus_10217#2 ------------------------------------------------------------
consensus_10217#1 ------------------------------------------------------------
consensus_10217#0 TCTCCCGCTGCGTCTGCCTCCCCCTCGCGCCGCCGTCGTCGCCTCCGCCTTCCCCTCGCG 180
consensus_10217#2 ------------------------------------------------------------
consensus_10217#1 ------------------------------------------------------------
consensus_10217#0 CCCGCGCCTCCGCCTTGCAACGTAGCCATCGTCGTCTCCGTCGGCTCGCGCTGCCGCCTC 240
consensus_10217#2 ------------------------------------------------------------
consensus_10217#1 ------------------------------------------------------------
consensus_10217#0 CACCTCCCCCGCCGGTGCCGCCGCCGTCGTCGCGTTGTCGTCTCCGAGCGCCTCCGCCTC 300
consensus_10217#2 ------------------------------------------------------------
consensus_10217#1 ------------------------------------------------------------
consensus_10217#0 CCGCCTCGCGCCGCCGCCGAGCGCAGCCATCCCCGTCTCCGCCACTGCCGTCGGCATCAT 360
consensus_10217#2 ------------------------------------------------------------
consensus_10217#1 ------------------------------------------------------------
consensus_10217#0 CGAGCGCCCCCGACTATCGGCCGAGACGGCTAGCTCGGGGAGGGGATGGCTATGGCGCGT 420
consensus_10217#2 --------------------------------------------------------CCTT 4
consensus_10217#1 ------------------------------------------------GACCACATCGAG 12
consensus_10217#0 CCGTCGA-CATCGCGCTGCCGCTCCCGGAGATGACGCCCCGCATCATAGGT---ATCTGC 476
consensus_10217#2 CAGGCAATCATATTGCTGTTATTCGTGGATGGGGTGGGCTCTTTCTCA--------CTGT 56
consensus_10217#1 CGAGCCGCCGAGCCGGACTCCTCCTCGAATCGAATCGAAACGCCCCCGATTTGAAGCAGC 72
* * * * * * * * * *
consensus_10217#0 AAGGAATTGGTGAGAGGACGGTCATCGCTAGACAGCTCGCGCTTCTCGATCGAGACGGTG 536
consensus_10217#2 TAT--ATTGTCTAATA-----TCATC-TTTCTCTTTTTTCATTTTTTGTCCATTGTGAAT 108
consensus_10217#1 AAAAAGATATCCGAAATCGAATCGAGTCGAGTACTCGAGTGACGCCTTCGCCTCGGGTGT 132
* * ** * *
consensus_10217#0 TCTGGCGGCAGCATCACGAATATGTTGCTGAGTGTCTCCGTAGAAGATGGCAAGGGCAAC 596
consensus_10217#2 TCAGACAAAAAAAATTCAAACAAGGCCTTAATTTTTATGATAAATTTTCATTAGATTAAT 168
consensus_10217#1 CCAGGAATAGCTCGAGCTTCCGCCACGCCACGCGCGAGGGAAGGAGCGGGTCGCGCGGGG 192
* * * *
consensus_10217#0 AAGTCTTCTGTGACTGTTCGTTTGTATGGCCCAAATACAGCCTTGGTGATTGATCGGAAG 656
consensus_10217#2 TAGGACTTTCAAAAGG---ATATAAATCAACC---TATAGTATTGG-AATTG--CGTAAG 219
consensus_10217#1 GAGGGGGGGCATGGGAT-CGGAGGGGCGGANT--GGAGCGGGGCGGCGGCGG--TGGGGG 247
** * * ** * * *
consensus_10217#0 AAGGAAATGCAGGCTATACCACATCTCTCAGCTCCAGGGTTTGGGGTCAGCTACTTGGAA 716
consensus_10217#2 GCTTTCTTTACAGTCGTGTGA--TTCGTCACGTTTGTTGCTTGCTGTGGCCATACAAAGA 277
consensus_10217#1 GCGGCGTGGAAGGGGAGGCGGCGATCGCGGCGGTGGTGGCGC-CTNCGCCGGGGGACGTG 306
* *
consensus_10217#0 CATTTGAAA-ATGGAATGGTCCAGTCATT--CATCTATGCACGTACATTAACTCCTTCAG 773
consensus_10217#2 TATCCGTCTTGTGTTCTGATAGATGTATTGACATCAATATTGTTATGTTATCAA-TTCAG 336
consensus_10217#1 CCGGCGTCGGGCGCGTCCGTGGACATAGCGCTGCCGCTCCCGG-AGATGACGCCCCGCAT 365
* * * * * * * * * * **
consensus_10217#0 CAAGGATGTAAATGGAAAAGGTTTCAGGGCCAATGGGAGTGAATCATCGAATAGACAGC- 832
consensus_10217#2 CAAGGATGTAAATGGAAAAGGTTTCAGGGCCAATGGGAGTGAATCATCGAATAGACAGC- 395
consensus_10217#1 CATAGGTAT--CTGCAAGGAATT----GGTGAGGGGGTGGTCATCGCTGGACAGCTCGCG 419
** * * * ** ** ** ** * *** * *** * * ** **
consensus_10217#0 --CAAAGGACAAAGGATTCTCATGAAAAACAAGGATTTCAGCTTACAAGAGGTGCTTGAA 890
consensus_10217#2 --CAAAGGACAAAGGATTCTCATGAAAAACAAGGATTTCAGCTTACAAGAGGTGCTTGAA 453
consensus_10217#1 CTTCTCGATCGAGACGGTGTCTGGCGGCATCACGAATATG--TTGCTGAANGTGTCCGCA 477
* * * * ** * * * ** * ** * * *** * *
consensus_10217#0 TGCACCGCGGAGTGTATTTTCACATTTTGTTGGAGAAATAATTGAGGCAATGGCTGGACA 950
consensus_10217#2 TGCACCGCGGAGTGTATTTTCACATTTTGTTGGAGAAATAATTGAGGCAATGGCTGGACA 513
consensus_10217#1 GAAGATGGCAAGGGTA---ACAAGTCTTCTGTGACAGTTCGTT--TGTATGGCCCAAATA 532
* ** *** ** * ** * ** * * ** * * * * * *
consensus_10217#0 TATACCCCTACAGTAATCATGGGAAAGCTATTATCTGACA-ACGGGAGTCAAGAGTTCGG 1009
consensus_10217#2 TATACCCCTACAGTAATCATGGGAAAGCTATTATCTGACA-ACGGGAGTCAAGAGTTCGG 572
consensus_10217#1 CAGACTTGGTGATTGATCG-GAAGAGGGAATTGCAGGCTATACCACATCTCTCAGCTGCA 591
* ** * * *** * * * *** * * ** * ** *
consensus_10217#0 TGATTTTAAGCTCGTTATACATAGAATGCTGTCTGTATCTTTATGAAAAAAGAATGCTGT 1069
consensus_10217#2 TGATTTTAAGCTCGTTATACATAGAATGCTGTCTGTATCTTTATGAAAAAAGAATGCTGT 632
consensus_10217#1 GGGTTTGGGGCTCAGC-TACTTGGAACAT--TTGAAAATGGAATGGTCCAGTCATTCATC 648
* *** **** *** * *** * * *** * ** *
consensus_10217#0 TATGTCC--ATATTGATTTTATCCCATATGCAATTTACTTGCTGCTATAGCAGATCAGCA 1127
consensus_10217#2 TATGTCC--ATATTGATTTTATCCCATATGCAATTTACTTGCTGCTATAGCAGATCAGCA 690
consensus_10217#1 TATGCACGAACATTAACTCCTTCAGACATG-AAGGAAC---CTAGAATAGCAGCTGAAGA 704
**** * * *** * * ** * *** ** ** ** ******* * * *
consensus_10217#0 ATGCTTTAGGCTTTTCCATGCTGCTGTAATGTAAAATCATTAGGAAATTCCCGAAGTACA 1187
consensus_10217#2 ATGCTTTAGGCTTTTCCATGCTGCTGTAATGTAAAATCATTAGGAAA------------- 737
consensus_10217#1 TTGCCAAAGAGATTCGCA-GATTCCATCAAGTTGATATACCAGGATCA------------ 751
*** ** ** ** * * * * * ** * * ****
consensus_10217#0 CATCGCTTACAATGATTGACAGACTTAGTGTTGTTTTAAATTGAACGCTTGTT 1240
consensus_10217#2 -----------------------------------------------------
consensus_10217#1 -----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||