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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10223#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1759 fasta sequence
[TACAACATTTGAAAACATTTTTATTAAATAGTACAAGGTTTGCATGGGCCATATACCAAAACAGTATTTGTGAACCCATGGTCCTTGTTCTGAACCAAGACTTGGTTTCATGATGACACCAAACCGAAGAAAACAAACTGCGACCATATTTGTCCAAACTGAAGTTCTACCTCTGACTCTGAGTTCCATTGAATATTTGCCAATCCATCTTATTCAGCGCCTTAGCAAATTGTTCCTTTCATGTTTCAAGGCACGTAAAAACAAGTATGTACAACCAACAAAATTTGAAATCTGCTCAGGTTTCCAGATCTATGTAGCATACTAGTTCCTTCAAGAAGGTTCATAGTGTTAATTGTATGCCTGTTTGCAGTCTTGAGCAAGACTTGCCTACCACTTACTAGTCCCATCTGCAGCTCTTGTGGAATCTCACCCTGAATAGCCTGACTAAAATGGACAAGCTCAAGCTCAGGCATTACAACATAACATGGGTGCTTTACACCACATGCATACGAAATACCAGATCTGTAATTCTGATGAATCTTGATTGGATCCTGGGACACATGAGGATGAGGGTGAATAACTTGTTACCTGATGATCTAACCGATCCCTTATCAACTATTTTTGGTGCCTTTGACTTGTGATCCTTGATGCTCCCTGCTGCTTGGAAAGGATTTCAGCTATAAGTTGCTTTTGGCCAAAGAGTTGGGCATTTCTCAAAAGCAAGTTCCTTGATGATGAGTCCACAGAATAGCCTTGACCAGTCATCCAGTCCAAGAGGCAAAGCAGTAGCTGCTTCTTATCAGGTTTCTGAATGTATCGCTGAATTGCTTTCCCAAAGATATCCTGGCTAATACGCCATCCTGAACGGTGTACTGCTTTCATAACATCGTTAATCAAATTTATGTTGCCTGATGCCATGAAAGATCTAGCAAAATTCCCCAGCGAGCGTCGAGATATGAACTCGGAATTGTCCTTAACAACTACGTATGCATCCTTGAGAAGTCCAGCTGGAACTAAGATACATAAAACCTTCTCATGAAGAGATTTACACACTGTTCTCTTTCCATATCTCAACATATTATACACAGAAAATGCTTCAGAAGGAAAACCCGCTTCTCCTAGCTGCATCATTATCTCAGAACAAAGCTCCTCATTCAATTGATGGCCCTTTGTATGCATATCTTGAATTGTCTTGTATGCTAGGTGATAGACCTTTGCCATGCAGAAGTACCTTATTAAGGTATTAAATGTGATAGCATCAGGCGATATGTTCGATTCATCCATTTTCCTAAGCATGATCATTACACTTTCCATATCATTGGTGCTGCAGTAAGCACGAAGTGATGTATTAAGCATAACCAGATCATATGTTGCATTCTTGGCCTCAAATTCTTTTGCAAGTTGTTTTGACTCTTCACGATAGCCACCTCGATGTAATGCTGATATCATGATACTGAATGCATAGCCATCTGCAGAAATAAGAAGATAAGCTCCTTAGGCAAGGACAACAAGACACAAATTCTGGGTAATAGCAGGCAGCAGCACTAGAAAATACTCCAGGGAAAAAAAATCAACATACTACTCCCACCAGTTTCATAAACAGGTTGTTTTATCATGCCAGTCAACACAAGTTAATTTTGAGCATAAAAATCATTAAAAAAATAAATGTTAGGTATATGAAAATAGCATAATCAAGTTTTTCAAAACTAGAGATTTCATTATATTTCACTTATGTAACTTCTTTTTTTAATTTATGCTA]
[+] EMBL CB677984 [TACAACATTTGAAAACATTTTTATTAAATAGTACAAGGTTTGCATGGGCCATATACCAAAACAGTATTTGTGAACCCATGGTCCTTGTTCTGAACCAAGACTTGGTTTCATGATGACACCAAACCGAAGAAAACAAACTGCGACCATATTTGTCCAAACTGAAGTTCTACCTCTGACTCTGAGTTCCATTGAATATTTGCCAATCCATCTTATTCAGCGCCTTAGCAAATTGTTCCTTTCATGTTTCAAGGCACGTAAAAACAAGTATGTACAACCAACAAAATTTGAAATCTGCTCAGGTTTCCAGATCTATGTAGCATACTAGTTCCTTCAAGAAGGTTCATAGTGTTAATTGTATGCCTGTTTGCAGTCTTGAGCAAGACTTGCCTACCACTTACTAGTCCCATCTGCAGCTCTTGTGGAATCTCACCCTGAATAGCCTGACTAAAATGGACAAGCTCAAGCTCAGGCATTACAACATAACATGGGTGCTTTACACCACATGCATACGAAATACCAGATCTGTAATTCTGATGAATCTTGATTGGATCCTGGGACACATGAGGATGAGGGTGAATAACTTGTTACCTGATGATCTAACCGATCCCTTATCAACTATTTTTGGTGCCTTTGACTTGTGATCCTTGATGCTCCCTGCTGCTTGGAAAGGATTTCAGCTATAAGTTGCTTTTGGCCAAAGAGTTGGGCATTTCTCAAAAGCAAGTTCCTTGATGATGAGTCCACAGAATAGCCTTGACCAGTCATCCAGTCCAAGAGGCAAAGCAGTAGCTGCTTCTTATCAGGTTT ]
[+] EMBL CB677986 [TACAACATTTGAAAACATTTTTATTAAATAGTACAAGGTTTGCATGGGCCATATACCAAAACAGTATTTGTGAACCCATGGTCCTTGTTCTGAACCAAGACTTGGTTTCATGATGACACCAAACCGAAGAAAACAAACTGCGACCATATTTGTCCAAACTGAAGTTCTACCTCTGACTCTGAGTTCCATTGAATATTTGCCAATCCATCTTATTCAGCGCCTTAGCAAATTGTTCCTTTCATGTTTCAAGGCACGTAAAAACAAGTATGTACAACCAACAAAATTTGAAATCTGCTCAGGTTTCCAGATCTATGTAGCATACTAGTTCCTTCAAGAAGGTTCATAGTGTTAATTGTATGCCTGTTTGCAGTCTTGAGCAAGACTTGCCTACCACTTACTAGTCCCATCTGCAGCTCTTGTGGAATCTCACCCTGAATAGCCTGACTAAAATGGACAAGCTCAAGCTCAGGCATTACAACATAACATGGGTGCTTTACACCACATGCATACGAAATACCAGATCTGTAATTCTGATGAATCTTGATTGGATCCTGGGACACATGAGGATGAGGGTGAATAACTTGTTACCTGATGATCTAACCGATCCCTTATCAACTATTTTTGGTGCCTTTGACTTGTGATCCTTGATGCTCCCTGCTGCTTGGAAAGGATTTCAGCTATAAGTTGCTTTTGGCCAAAGAGTTGGGCATTTCTCAAAAGCAAGTTCCTTG ]
[+] EMBL CB662761 [ ACATTTTTATTAAATAGTAAAAGGTTTGCATGGGCCATATACCAAAACAGTATTTGTGAACCCATGGTCCTTGTTCTGAACCAAGACTTGGTTTCATGATGACACCAAACCGAAAAAAACAAACTGCGACCATATTTGTCCAAACTGAAGTTCTACCTCTGACTCTGAGTTCCATTGAATATTTGCCAATCCATCTTATTCAGCGCCTTAACAAATTGTTCCTTTCATGTTTCAAGGCACGTAAAAACAAGTATGTACAACCAACAAAATTTGAAATCTGCTCAGGTTTCCAAATCTATGTAGCATACTAGTTCCTTCAAGAAGGTTCATAGTGTTAATTGTATGCCTGTTTGCAGTCTTGAGCAAAACTTGCCTACCACTTACTAGTCCCATCTGCAGCTCTTGTGGAATCTCACCCTGAATAGCCTGACTAAAATGGACAAGCTCAAGCTCAGGCATTACAACATAACATGGGTGCTTTACACCACATGCATACGAAATACCAAATCTGTAATTCTGATGAATCTTGATTGGATCCTGGGACACATGAGGATGAGGGTGAATAACTTGTTACCTGATGATCTAACCGATCCCTTATCAACTATTTTTGGTGCCTTTGACTTGTGATCCTTGATGCTCCCTGCTGCTTGGAAAGGATTTCAGCTATAAGTTGCTTTTGGCCAAAGAGTTGGGCATTTCTCAAAAGCAAGTTC ]
[-] EMBL CB662760 [ CCTTGATGCTCCATGCTGCTTGGAAAGGATTTCAGCTATAAGTTGCTTTTGGCCAAAGAGTTGGGCATTTCTCAAAAGCAAGTTCCTTGATGATGAGTCCACAGAATAGCCTTGACCAGTCATCCAGTCCAAGAGGCAAAGCAGTAGCTGCTTCTTATCAGGTTTCTGAATGTATCGCTGAATTGCTTTCCCAAAGATATCCTGGCTAATACGCCATCCTGAACGGTGTACTGCTTTCATAACATCGTTAATCAAATTTATGTTGCCTGATGCCATGAAAGATCTAGCAAAATTCCCCAGCGAGCGTCGAGATATGAACTCGGAATTGTCCTTAACAACTACGTATGCATCCTTGAGAAGTCCAGCTGGAACTAAGATACATAAAACCTTCTCATGAAGAGATTTACACACTGTTCTCTTTCCATATCTCAACATATTATACACAGAAAATGCTTCAGAAGGAAAACCCGCTTCTCCTAGCTGCATCATTATCTCAGAACAAAGCTCCTCATTCAATTGATGGCCCTTTGTATGCATATCTTGAATTGTCTTGTATGCTAGGTGATAGACCTTTGCCATGCAGAAGTACCTTATTAAGGTATTAAATGTGATAGCATCAGGCGATATGTTCGATTCATCCATTTTCCTAAGCATGATCATTACACTTTCCATATCATTGGTGCTGCAGTAAGCACGAAGTGATGTATTAAGCATAACCAGATCATATGTTGCATTCTTGGCCTCAAATTCTTTTGCAAGTTGTTTTGACTCTTCACGATAGCCACCT ]
[-] EMBL CB677985 [ GCTGGAACTAAGATACATAAAACCTTCTCATGAAGAGATTTACACACTGTTCTCTTTCCATATCTCAACATATTATACACAGAAAATGCTTCAGAAGGAAAACCCGCTTCTCCTAGCTGCATCATTATCTCAGAACAAAGCTCCTCATTCAATTGATGGCCCTTTGTATGCATATCTTGAATTGTCTTGTATGCTAGGTGATAGACCTTTGCCATGCAGAAGTACCTTATTAAGGTATTAAATGTGATAGCATCAGGCGATATGTTCGATTCATCCATTTTCCTAAGCATGATCATTACACTTTCCATATCATTGGTGCTGCAGTAAGCACGAAGTGATGTATTAAGCATAACCAGATCATATGTTGCATTCTTGGCCTCAAATTCTTTTGCAAGTTGTTTTGACTCTTCACGATAGCCACCTCGATGTAATGCTGATATCATGATACTGAATGCATAGCCATCTGCAGAAATAAGAAGATAAGCTCCTTAGGCAAGGACAACAAGACACAAATTCTGGGTAATAGCAGGCAGCAGCACTAGAAAATACTCCAGGGAAAAAAAATCAACATACTACTCCCACCAGTTTCATAAACAGGTTGTTTTATCATGCCAGTCAACACAAGTTAATTTTGAGCATAAAAATCATTAAAAAAATAAATGTTAGGTATATGAAAATAGCATAATCAAGTTTTTCAAAACTAGAGATTTCATTATATTTCACTTATGTAACTTCTTTTTTTAATTTATGCTA]
[-] EMBL CB677983 [ ACCTTCTCATGAAGAGATTTACACACTGTTCTCTTTCCATATCTCAACATATTATACACAGAAAATGCTTCAGAAGGAAAACCCGCTTCTCCTAGCTGCATCATTATCTCAGAACAAAGCTCCTCATTCAATTGATGGCCCTTTGTATGCATATCTTGAATTGTCTTGTATGCTAGGTGATAGACCTTTGCCATGCAGAAGTACCTTATTAAGGTATTAAATGTGATAGCATCAGGCGATATGTTCGATTCATCCATTTTCCTAAGCATGATCATTACACTTTCCATATCATTGGTGCTGCAGTAAGCACGAAGTGATGTATTAAGCATAACCAGATCATATGTTGCATTCTTGGCCTCAAATTCTTTTGCAAGTTGTTTTGACTCTTCACGATAGCCACCTCGATGTAATGCTGATATCATGATACTGAATGCATAGCCATCTGCAGAAATAAGAAGATAAGCTCCTTAGGCAAGGACAACAAGACACAAATTCTGGGTAATAGCAGGCAGCAGCACTAGAAAATACTCCAGGGAAAAAAAATCAACATACTACTCCCACCAGTTTCATAAACAGGTTGTTTTATCATGCCAGTCAACACAAGTTAATTTTGAGCATAAAAATCATTAAAAAAATAAATGTTAGGTATATGAAAATAGCATAATCAAGTTTTTCAAAACTAGAGATTTCATTATATTTCACTTATGTAACTTCTTTTTTTAATTTAGGCTA]
consensusID : consensus_10223#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence
[TTTTAAATTGGAGGATCTGCTCAGGTTTCCAGATCTATGTAGCATACTAGTTCCTTCAAGAAGGTTCATAGNGTTAACTGACAAAACACCAAACTCAATATACACTTTCTCTGATGTTGCTGTAAAGAAATGCAAGGGAACTTACTTTTATGCCGGTTGGGAGTCTTGAGCAAGACTTGCCTACCACTTACTAGTCCCATCTGCAGCTCTTGGTGGAATCTCACCCTGAATAGCCTGACTAAAATGGACAAGCTCAAGCTCAGGCATTACAACATAACATGGGTGCTTTACACCACATGCATACGAAATACCAGATCTGTAATTCTGATGAATCTTGATTGGATCCTGGGACACATGAGGATGAGGGTGAATAACTTGTTACCTGATGATCTAACCGATCCCTTATCAACTATTTTGGTGCCTTTGACTTGTGATCCTTGGATGCT]
[-] EMBL BM420276 [TTTTAAATTGGAGGATCTGCTCAGGTTTCCAGATCTATGTAGCATACTAGTTCCTTCAAGAAGGTTCATAGNGTTAACTGACAAAACACCAAACTCAATATACACTTTCTCTGATGTTGCTGTAAAGAAATGCAAGGGAACTTACTTTTATGCCGGTTGGGAGTCTTGAGCAAGACTTGCCTACCACTTACTAGTCCCATCTGCAGCTCTTGGTGGAATCTCACCCTGAATAGCCTGACTAAAATGGACAAGCTCAAGCTCAGGCATTACAACATAACATGGGTGCTTTACACCACATGCATACGAAATACCAGATCTGTAATTCTGATGAATCTTGATTGGATCCTGGGACACATGAGGATGAGGGTGAATAACTTGTTACCTGATGATCTAACCGATCCCTTATCAACTATTTTGGTGCCTTTGACTTGTGATCCTTGGATGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10223#0 TACAACATTTGAAAACATTTTTATTAAATAGTACAAGGTTTGCATGGGCCATATACCAAA 60
consensus_10223#1 ------------------------------------------------------------
consensus_10223#0 ACAGTATTTGTGAACCCATGGTCCTTGTTCTGAACCAAGACTTGGTTTCATGATGACACC 120
consensus_10223#1 ------------------------------------------------------------
consensus_10223#0 AAACCGAAGAAAACAAACTGCGACCATATTTGTCCAAACTGAAGTTCTACCTCTGACTCT 180
consensus_10223#1 --------------------------------------------------------TTTT 4
* *
consensus_10223#0 GAGTTCCATTGAATATTTGCCAATCCATCTTATTCAGCGCCTTAGCAAATTGTTCCTTTC 240
consensus_10223#1 AAATTG----GAGGATCTGCTCAGGTTTCCAGATCTATG---TAGCATACTAGTTCCTTC 57
* ** ** ** *** * ** ** * ***** * * * * ***
consensus_10223#0 ATGTTTCAAGGCACGTAAAAACAAGTATGTACAACCAACAAAATTTGAAATCTGCTCAGG 300
consensus_10223#1 AAG----AAGGTTCATAGNGTTAACTG---ACAAAACACCAAACTCAATATACACT---- 106
* * **** * ** ** * **** ** *** * * ** **
consensus_10223#0 TTTCCAGATCTATGTAGCATACTAGTTCCTTCAAGAAGGTTCATAGTGTTAATTGTATGC 360
consensus_10223#1 TTCTCTGATGT-TGCTGTAAAGAAA----TGCAAGGGAACTTAC--------TTTTATGC 153
** * *** * ** * * * * * **** * * ** *****
consensus_10223#0 CTGTTTGCAGTCTTGAGCAAGACTTGCCTACCACTTACTAGTCCCATCTGCAGCTCTTG- 419
consensus_10223#1 CGGTTGGGAGTCTTGAGCAAGACTTGCCTACCACTTACTAGTCCCATCTGCAGCTCTTGG 213
* *** * ***************************************************
consensus_10223#0 TGGAATCTCACCCTGAATAGCCTGACTAAAATGGACAAGCTCAAGCTCAGGCATTACAAC 479
consensus_10223#1 TGGAATCTCACCCTGAATAGCCTGACTAAAATGGACAAGCTCAAGCTCAGGCATTACAAC 273
************************************************************
consensus_10223#0 ATAACATGGGTGCTTTACACCACATGCATACGAAATACCAGATCTGTAATTCTGATGAAT 539
consensus_10223#1 ATAACATGGGTGCTTTACACCACATGCATACGAAATACCAGATCTGTAATTCTGATGAAT 333
************************************************************
consensus_10223#0 CTTGATTGGATCCTGGGACACATGAGGATGAGGGTGAATAACTTGTTACCTGATGATCTA 599
consensus_10223#1 CTTGATTGGATCCTGGGACACATGAGGATGAGGGTGAATAACTTGTTACCTGATGATCTA 393
************************************************************
consensus_10223#0 ACCGATCCCTTATCAACTATTTTTGGTGCCTTTGACTTGTGATCCTTG-ATGCTCCCTGC 658
consensus_10223#1 ACCGATCCCTTATCAACTATTTT-GGTGCCTTTGACTTGTGATCCTTGGATGCT------ 446
*********************** ************************ *****
consensus_10223#0 TGCTTGGAAAGGATTTCAGCTATAAGTTGCTTTTGGCCAAAGAGTTGGGCATTTCTCAAA 718
consensus_10223#1 ------------------------------------------------------------
consensus_10223#0 AGCAAGTTCCTTGATGATGAGTCCACAGAATAGCCTTGACCAGTCATCCAGTCCAAGAGG 778
consensus_10223#1 ------------------------------------------------------------
consensus_10223#0 CAAAGCAGTAGCTGCTTCTTATCAGGTTTCTGAATGTATCGCTGAATTGCTTTCCCAAAG 838
consensus_10223#1 ------------------------------------------------------------
consensus_10223#0 ATATCCTGGCTAATACGCCATCCTGAACGGTGTACTGCTTTCATAACATCGTTAATCAAA 898
consensus_10223#1 ------------------------------------------------------------
consensus_10223#0 TTTATGTTGCCTGATGCCATGAAAGATCTAGCAAAATTCCCCAGCGAGCGTCGAGATATG 958
consensus_10223#1 ------------------------------------------------------------
consensus_10223#0 AACTCGGAATTGTCCTTAACAACTACGTATGCATCCTTGAGAAGTCCAGCTGGAACTAAG 1018
consensus_10223#1 ------------------------------------------------------------
consensus_10223#0 ATACATAAAACCTTCTCATGAAGAGATTTACACACTGTTCTCTTTCCATATCTCAACATA 1078
consensus_10223#1 ------------------------------------------------------------
consensus_10223#0 TTATACACAGAAAATGCTTCAGAAGGAAAACCCGCTTCTCCTAGCTGCATCATTATCTCA 1138
consensus_10223#1 ------------------------------------------------------------
consensus_10223#0 GAACAAAGCTCCTCATTCAATTGATGGCCCTTTGTATGCATATCTTGAATTGTCTTGTAT 1198
consensus_10223#1 ------------------------------------------------------------
consensus_10223#0 GCTAGGTGATAGACCTTTGCCATGCAGAAGTACCTTATTAAGGTATTAAATGTGATAGCA 1258
consensus_10223#1 ------------------------------------------------------------
consensus_10223#0 TCAGGCGATATGTTCGATTCATCCATTTTCCTAAGCATGATCATTACACTTTCCATATCA 1318
consensus_10223#1 ------------------------------------------------------------
consensus_10223#0 TTGGTGCTGCAGTAAGCACGAAGTGATGTATTAAGCATAACCAGATCATATGTTGCATTC 1378
consensus_10223#1 ------------------------------------------------------------
consensus_10223#0 TTGGCCTCAAATTCTTTTGCAAGTTGTTTTGACTCTTCACGATAGCCACCTCGATGTAAT 1438
consensus_10223#1 ------------------------------------------------------------
consensus_10223#0 GCTGATATCATGATACTGAATGCATAGCCATCTGCAGAAATAAGAAGATAAGCTCCTTAG 1498
consensus_10223#1 ------------------------------------------------------------
consensus_10223#0 GCAAGGACAACAAGACACAAATTCTGGGTAATAGCAGGCAGCAGCACTAGAAAATACTCC 1558
consensus_10223#1 ------------------------------------------------------------
consensus_10223#0 AGGGAAAAAAAATCAACATACTACTCCCACCAGTTTCATAAACAGGTTGTTTTATCATGC 1618
consensus_10223#1 ------------------------------------------------------------
consensus_10223#0 CAGTCAACACAAGTTAATTTTGAGCATAAAAATCATTAAAAAAATAAATGTTAGGTATAT 1678
consensus_10223#1 ------------------------------------------------------------
consensus_10223#0 GAAAATAGCATAATCAAGTTTTTCAAAACTAGAGATTTCATTATATTTCACTTATGTAAC 1738
consensus_10223#1 ------------------------------------------------------------
consensus_10223#0 TTCTTTTTTTAATTTATGCTA 1759
consensus_10223#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||