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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10225#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 510 fasta sequence
[TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGAAACAGAAGGAGAAGCAGAACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATACCAGAGATCGTCAAGTGAACAGCCGGCTGTAATTTTCCAGTGTGCTCATTT-CCCTGTCCCAGATTAGCTCTGTGTAGTTCCTC-AATACTTCGAGTTTTTTTGCAACAAACAATGTGTAGCTTGCCTGTGACTCTGAGTAACTTGCTTTGTTCTTCCTTACTAAATCTGCAGCTAGAGTCTCCTGGGATATTAGAAATCGGTATTTTATGGACTTATGGAACGGCGAAAATTACTGTTGTATATTGACCTCGTTTCTGATGAGTTACAGTGGCTGTACAGTGTGTGCGCGCGATTGCGTATGACCGAATGCTGTTTATCTGTTTTCTGAAAA]
[+] EMBL CB000291 [TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAAGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGAAACAGAAGGAGAAGCAGAACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATACCAGAGATCGTCAAGTGAACAGCCGGCTGTAATTTTCCAGTGTGCTCATTT CCCTGTCCCAGATTAGCTCTGTGTAGTTCCTC AATACTTCGAGTTTTTTTGCAACAAACAATGTGTAGCTTGCCTGTGACTCTGAGTAACTTGCTTTGTTCTTCCTTACTAAATCTGCAGCTAGAGTCTCCTGGGATATTAGAAATCGGTATTTTATGGACTTATGGAACGGCGAAAATTACTGTTGTATATTGACCTCGTTTCTGATGAGTTACAGTGGCTGTACAGTGTGTGCGCGCGATTGCGTATGACCGAATGCTGTTTATCTGTTTTCTGAAAA]
[+] EMBL BI806016 [TCTGGCGCCAAAGAGTCGTTTGCACAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAG CCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGAAACAGAAGGAGAAGCAGAACCAGAAGCAGGGGATC AAACGGAGAGCTGATTGTAAAGC CAGCATACCAGAGATCGTCAAGTGAACAGCCGGCTGTAATTTTCCAGTGTGCTCATTTCCCCTGTCCCAGATCAGCTCTGTGTAGTTCCTCAAATACTTCGAGTTTTTTTGCAAAAAAaa ]
[+] EMBL AK058978 [TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGAAACAGAAGGAGAAGCAGAACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATACCAGAGATCGTCAAGTGAACAGCCGGCTGTAATTTTCCAGTGTGCTCATTT CCCTGTCCCAGATTAGCTCTGTGTAGTTCCTC AATACTTCGA ]
[+] EMBL AA751823 [TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGAAACAGAAGGAGAATNTTAACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCACCATACCAAATATCNTCNNNTGAACNNCCGGCTGTAATTTTCCNGTGTGCTCATTT CCCTGT ]
[-] EMBL CB654225 [ CTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGAAACAGAAGGAGAAGCAGAACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATACCAGAGATCGTCAAGTGAACAGCCGGCTGTAATTTTCCAGTGTGCTCATTT CCCTGTCCCAGATTAGCTCTGTGTAGTTCCTC AATACTTCGAGTTTTTTTGCAACAAACAATGTGTAGCTTGCCTGTGACTCTGAGTAACTTGCTTTGTTCTTCCTTACTAAATCTGCAGCTAGAGTCTCCTGGGATATTAGAAATCGGTATTTTATGGACTTATGGAACGGCGAAAATTACTGTTGTATATTGACCTCGTTTCTGATG ]
[+] EMBL AF522015 [ AGATCGTCAAGTGAACAGCCGGCTGTAATTTTCCAGTGTGCTCATTT CCCTGTCCCAGATCAGCTCTGTGTAGTTCCTC AATACTTCGAG TTTTTTGCAACAAACAATGTGTAGCTTGCCTGTGACTGTGAGTAACTTGCTTTGTTCTTCCTTAaa ]
consensusID : consensus_10225#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence
[TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGNAACAGAAGGAGAAGCAGACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATACCAGAGATCGTCAAGTGAACAGNCGGCTGTATTTTTCAGNGNGCTCATTTCCTTGTCCANATCAGCTNTGGGTAGTTCCTCATACTTCGAGTTTTTTTGCAACAAACAATGNGTAGCNTGNCTGGGACTGGGANAAACTTGCTTGGTCTTCCNTACTAAANCTGCAGCTTANAGTCNCCCTNGGAAATTTAAAAACNGGATTTTATGGACTTATGGNACGGNGAAAATTACTGGTGGTTTTTGACCNCGGTTNTTGA]
[+] EMBL CA767420 [TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGNAACAGAAGGAGAAGCAGACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATACCAGAGATCGTCAAGTGAACAGNCGGCTGTATTTTTCAGNGNGCTCATTTCCTTGTCCANATCAGCTNTGGGTAGTTCCTCATACTTCGAGTTTTTTTGCAACAAACAATGNGTAGCNTGNCTGGGACTGGGANAAACTTGCTTGGTCTTCCNTACTAAANCTGCAGCTTANAGTCNCCCTNGGAAATTTAAAAACNGGATTTTATGGACTTATGGNACGGNGAAAATTACTGGTGGTTTTTGACCNCGGTTNTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10225#0 TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCG 60
consensus_10225#1 TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCG 60
************************************************************
consensus_10225#0 CCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGAAACAGAAG 120
consensus_10225#1 CCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGNAACAGAAG 120
*************************************************** ********
consensus_10225#0 GAGAAGCAGAACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATAC 180
consensus_10225#1 GAGAAGCAGA-CCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATAC 179
********** *************************************************
consensus_10225#0 CAGAGATCGTCAAGTGAACAGCCGGCTGTAATTTTCCAGTGTGCTCATTTCCCTGTCCCA 240
consensus_10225#1 CAGAGATCGTCAAGTGAACAGNCGGCTGTA-TTTTTCAGNGNGCTCATTTCCTTGTCC-A 237
********************* ******** **** *** * ********** ***** *
consensus_10225#0 GATTAGCTCTGTGTAGTTCCTCAATACTTCGAGTTTTTTTGCAACAAACAATGTGTAGCT 300
consensus_10225#1 NATCAGCTNTGGGTAGTTCCTCA-TACTTCGAGTTTTTTTGCAACAAACAATGNGTAGCN 296
** **** ** *********** ***************************** *****
consensus_10225#0 TGCCTGTGACTCTGAGTAACTTGCTTTGTTCTTCCTTACTAAATCTGCAGCT-AGAGTCT 359
consensus_10225#1 TGNCTGGGACTGGGANAAACTTGCTTGGT-CTTCCNTACTAAANCTGCAGCTTANAGTCN 355
** *** **** ** ********* ** ***** ******* ******** * ****
consensus_10225#0 CC-TGGGATATTAGAAATCGGTATTTTATGGACTTATGGAACGGCGAAAATTACTGTTGT 418
consensus_10225#1 CCCTNGGAAATTTAAAAACNGGATTTTATGGACTTATGGNACGGNGAAAATTACTGGTGG 415
** * *** *** *** * * ***************** **** *********** **
consensus_10225#0 ATATTGACCTCGTTTCTGATGAGTTACAGTGGCTGTACAGTGTGTGCGCGCGATTGCGTA 478
consensus_10225#1 TTTTTGACCNCGGTTNT--TGA-------------------------------------- 435
* ****** ** ** * ***
consensus_10225#0 TGACCGAATGCTGTTTATCTGTTTTCTGAAAA 510
consensus_10225#1 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||