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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10229#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1032 fasta sequence
[AAAGAAAAAAAACACACCATCACTCTCTCGCTCCCCATCGATCGGAGAAAATGGCAACCGCCGCCGCCGCCTCACGCGCCGCCCTCTCAAGGCCTCACGNCGCCGCCGCCGCG--GCGCGCGAGCCCCGCCGCGGGGGCGCGGGTGACGCTCCCGCGGCGCCGAAGCGTCCGATCCGCGGTGATCTCGTCGTCGGCGTCCGCGGCGGCG-GTGGCGGCGTCGGAGCCGGCGGCGGGGAGGGTGACGCTGGGCGCGGGGACGGACGGGGCGCTGTGGCCGAAGCCGGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGGTTCGCGGACGTGGAGTGCGCGTACGGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGCAGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTGGGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGCCTCGTCGTCAACGCCCCCACCGCCAACACCGTCGCCGCCGCCGAGCACGGCATCGCGCTCCTCGCCTCCATGGCGCGCAACGTCTCCCAGGCCGACGCCGCCCTCAAGGCCGACTGTCAGCGAGACACTGGGACAGATGAGCACTAGTACTTCTGTTGCAGTACAGAATTAGTACTACTACTCCACTAGTGGGCTAGTGGCAGTTTGTGGATAATTATCTGACATGGGAAATGGCAAAGAACCAAGTACGTTGGAGTTTCTCTGGTCGGGAAGACACTTGCGGTAATGGGCTTTGGCAAGGTTGGTTCAGAGGTAGCCAGGCGGGCGAAAGGGCTCGGTATGCATGTGATTGCTCATGATCCGTACGCCCCTGCCGATAGGGCTCGTGCCATTGGAGCTGAATTGGTCTCTTTCGATGAGGCCATTGGCAGAGCCGACTTCATCTCCCTTCACATGCCTCTCACCCCAGCAACATCCAAGGTCTTTCACGAC]
[+] EMBL CB649297 [AAAGAAAAAAAACACACCATCACTCTCTCGCTCCCCATCGATCGGAGAAAATGGCAACCGCCGCCGCCGCCTCACGCGCCGCCCTCTCAAGGCCTCACGCCGCCGCCGCCGCGGCGCGCGCGAGCCCCGCCGCGGGGGCGCGGGTGACGCTCCCGCGGCGCCGAAGCGTCCGATCCGCGGTGATCTCGTCGTCGGCGTCCGCGGCGGCG GTGGCGGCGTCGGAGCCGGCGGCGGGGAGGGTGACGCTGGGCGCGGGGACGGACGGGGCGCTGTGGCCGAAGCCGGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGGTTCGCGGACGTGGAGTGCGCGTACGGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACTCGCTCATCGTGCGCAGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCG ]
[+] EMBL AU197241 [ TCGCTCCCCATCGATCGGAGAAAATGGCAACCGCCGCCGCCGCCTCACGCGCCGCCCTCTCAAGGCCTCANGNCGCCGCCGCCGCG GCGCGCGAGCCCNGCCGCGGGGGCGCGGGTGACGCTCCCGCGGCGNCGAAGCGTCCGATCCGCGGTGATCTCGTCGTCGGNGTCCGCGGCGGCG GTGGCGGCGTCGGAGCCGGCGGCGNGGAGGGTGACGCTGGGCGCGGGGACGGACGGGGCGCTGTGGCCGAAGCCGGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGTGCTGGCGGTNCTGCGCGGGTTCG GGACGTGGAGTNCGCGTACGGGATNTCCCCCGCGGAGTTCCTCGCCAAGGTTGCGna ]
[+] EMBL AU069450 [ catncnGCTCCCCATCGATCGGAGAAAATGGCAACCGACGCCGCCGCCTCACGCGCCGCCCTCTCAAGGCCTCACGNCGNCGCCGNCGCG GCGCGCGAGCCCCGNCGCGGGGGCGCGGGTGACGCTCCCGCGGCGCCGAAGCGTCCGATCCGCGGTGATCTCGTCGTCGGCGTCCGCGGCGGCGNTTGGCGGC ]
[+] EMBL BP184355 [ TGACGCTGGGCGCGGGGACGGACGGGGCGCTGTGGCCGAAGCCGGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGGTTCGCGGACGTGGAGTGCGCGTACGGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGCAGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTGGGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGCCTCGTCGTCAACGCCCCCACCGCCAACACCGTCGCCGCCGCCGAGCACGGCATCGCGCTCCTCGCCTCCATGGCGCGCAACGTCTCCCAGGCCGACGCCGCCCT ]
[+] EMBL BP184367 [ TGACGCTGGGCGCGGGGACGGACGGGGCGCTGTGGCCGAAGCCGGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGGTTCGCGGACGTGGAGTGCGCGTACGGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGCAGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTGGGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGCCTCGTCGACAACGCCCCCACCGCCAACACCGTCGCCGTCGTCGAGCACGGCATCGCGCTCCTCGCCTCCATGGCGC ]
[+] EMBL CB683224 [ ACGGGGCGCTGTGGCCGAAGCCGGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGGTTCGCGGACGTGGAGTGCGCGTACGGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGCAGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTGGGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGCCTCGTCGTCAACGCCCCCACCGCCAACACCGTCGCCGCCGCCGAGCACGGCATCGCGCTCCTCGCCTCCATGGCGCGCAACGTCTCCCAGGCCGACGCCGCCCTCAAGGCCGACTGTCAGCGAGACACTGGGACAGATGAGCACTAGTACTTCTGTTGCAGTACAGAATTAGTACTACTACTCCACTAGTGGGCTAGTGGCAGTTTGTGGATAATTATCTGACATGGGAAATGGCAAAGAACCAAGTACGTTGGAGTTTCTCTGGTCGGGAAGACACTTGCGGTAATGGGCTTTGGCAAGGTTGGTTCAGAGGTAGCCAGGCGGGCGAAAGGGCTCGGTATGCATGTGATTGCTCATGATCCGTACGCCCCTGCCGATAGGGCTCGTGCCATTGGAGCTGAATTGGTCTCTTTCGATGAGGCCATTGGCAGAGCCGACTTCATCTCCCTTCACATGCCTCTCACCCCAGCAACATCCAAGGTCTTTCACGAC]
consensusID : consensus_10229#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 759 fasta sequence
[GGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGATTCGCGGACGTGGAGTGCGCGTACGGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGCAGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTGGGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGCCTCGTCGTCAACGCCCCCACCGCCAACACCGTCGCCGCCGCCGAGCACGGCATCGCGCTCCTCGCCTCCATGGCGCGCAACGTCTCCCAGGCCGACGCCGCCCTCAAGGCCGGGAAATGGCAAAGAACCAAGTACGTTGGAGTTTCTCTGGTTGGGAAGACACTTGCGGTCATGGGCTTTGGCAAGGTTGGTTCAGAGGTAGCCAGGCGGGCGAAAGGGCTCGGTATGCATGTGATTGCTCATGATCCGTACGCCCCTGCCGATAGGGCTCGTGCCATTGGAGCTGAACTGGTCTCTTTCGATGAGGCCATTGGCAGAGCCGACTTCATCTCCCTTCACATGCCTCTCACCCCAGCAACATCCAAGGTCTTCAACGACGAATCCTTTGCTAAGATGAAGAATGGAGTTCGGATCATCAATGTGGCCAGGGGTGGAGTGATCGACGAAGATGCTCTTGTCAGAGCCCTTGACTCTGGCAAAGTTGCTCAAGCAGCCCTTGA]
[+] EMBL CB624078 [GGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGATTCGCGGACGTGGAGTGCGCGTACGGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGCAGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTGGGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGCCTCGTCGTCAACGCCCCCACCGCCAACACCGTCGCCGCCGCCGAGCACGGCATCGCGCTCCTCGCCTCCATGGCGCGCAACGTCTCCCAGGCCGACGCCGCCCTCAAGGCCGGGAAATGGCAAAGAACCAAGTACGTTGGAGTTTCTCTGGTTGGGAAGACACTTGCGGTCATGGGCTTTGGCAAGGTTGGTTCAGAGGTAGCCAGGCGGGCGAAAGGGCTCGGTATGCATGTGATTGCTCATGATCCGTACGCCCCTGCCGATAGGGCTCGTGCCATTGGAGCTGAACTGGTCTCTTTCGATGAGGCCATTGGCAGAGCCGACTTCATCTCCCTTCACATGCCTCTCACCCCAGCAACATCCAAGGTCTTCAACGACGAATCCTTTGCTAAGATGAAGAATGGAGTTCGGATCATCAATGTGGCCAGGGGTGGAGTGATCGACGAAGATGCTCTTGTCAGAGCCCTTGACTCTGGCAAAGTTGCTCAAGCAGCCCTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10229#0 AAAGAAAAAAAACACACCATCACTCTCTCGCTCCCCATCGATCGGAGAAAATGGCAACCG 60
consensus_10229#1 ------------------------------------------------------------
consensus_10229#0 CCGCCGCCGCCTCACGCGCCGCCCTCTCAAGGCCTCACGNCGCCGCCGCCGCGGCGCGCG 120
consensus_10229#1 ------------------------------------------------------------
consensus_10229#0 AGCCCCGCCGCGGGGGCGCGGGTGACGCTCCCGCGGCGCCGAAGCGTCCGATCCGCGGTG 180
consensus_10229#1 ------------------------------------------------------------
consensus_10229#0 ATCTCGTCGTCGGCGTCCGCGGCGGCGGTGGCGGCGTCGGAGCCGGCGGCGGGGAGGGTG 240
consensus_10229#1 ------------------------------------------------------------
consensus_10229#0 ACGCTGGGCGCGGGGACGGACGGGGCGCTGTGGCCGAAGCCGGCGGTGCTGGTGGCGGAG 300
consensus_10229#1 -----------------------------------------GGCGGTGCTGGTGGCGGAG 19
*******************
consensus_10229#0 AAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGGTTCGCGGACGTGGAGTGCGCGTAC 360
consensus_10229#1 AAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGATTCGCGGACGTGGAGTGCGCGTAC 79
*********************************** ************************
consensus_10229#0 GGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGC 420
consensus_10229#1 GGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGC 139
************************************************************
consensus_10229#0 AGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTG 480
consensus_10229#1 AGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTG 199
************************************************************
consensus_10229#0 GGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGC 540
consensus_10229#1 GGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGC 259
************************************************************
consensus_10229#0 CTCGTCGTCAACGCCCCCACCGCCAACACCGTCGCCGCCGCCGAGCACGGCATCGCGCTC 600
consensus_10229#1 CTCGTCGTCAACGCCCCCACCGCCAACACCGTCGCCGCCGCCGAGCACGGCATCGCGCTC 319
************************************************************
consensus_10229#0 CTCGCCTCCATGGCGCGCAACGTCTCCCAGGCCGACGCCGCCCTCAAGGCCGACTGTCAG 660
consensus_10229#1 CTCGCCTCCATGGCGCGCAACGTCTCCCAGGCCGACGCCGCCCTCAAGGCCG-------- 371
****************************************************
consensus_10229#0 CGAGACACTGGGACAGATGAGCACTAGTACTTCTGTTGCAGTACAGAATTAGTACTACTA 720
consensus_10229#1 ------------------------------------------------------------
consensus_10229#0 CTCCACTAGTGGGCTAGTGGCAGTTTGTGGATAATTATCTGACATGGGAAATGGCAAAGA 780
consensus_10229#1 ----------------------------------------------GGAAATGGCAAAGA 385
**************
consensus_10229#0 ACCAAGTACGTTGGAGTTTCTCTGGTCGGGAAGACACTTGCGGTAATGGGCTTTGGCAAG 840
consensus_10229#1 ACCAAGTACGTTGGAGTTTCTCTGGTTGGGAAGACACTTGCGGTCATGGGCTTTGGCAAG 445
************************** ***************** ***************
consensus_10229#0 GTTGGTTCAGAGGTAGCCAGGCGGGCGAAAGGGCTCGGTATGCATGTGATTGCTCATGAT 900
consensus_10229#1 GTTGGTTCAGAGGTAGCCAGGCGGGCGAAAGGGCTCGGTATGCATGTGATTGCTCATGAT 505
************************************************************
consensus_10229#0 CCGTACGCCCCTGCCGATAGGGCTCGTGCCATTGGAGCTGAATTGGTCTCTTTCGATGAG 960
consensus_10229#1 CCGTACGCCCCTGCCGATAGGGCTCGTGCCATTGGAGCTGAACTGGTCTCTTTCGATGAG 565
****************************************** *****************
consensus_10229#0 GCCATTGGCAGAGCCGACTTCATCTCCCTTCACATGCCTCTCACCCCAGCAACATCCAAG 1020
consensus_10229#1 GCCATTGGCAGAGCCGACTTCATCTCCCTTCACATGCCTCTCACCCCAGCAACATCCAAG 625
************************************************************
consensus_10229#0 GTCTTTCACGAC------------------------------------------------ 1032
consensus_10229#1 GTCTTCAACGACGAATCCTTTGCTAAGATGAAGAATGGAGTTCGGATCATCAATGTGGCC 685
***** *****
consensus_10229#0 ------------------------------------------------------------
consensus_10229#1 AGGGGTGGAGTGATCGACGAAGATGCTCTTGTCAGAGCCCTTGACTCTGGCAAAGTTGCT 745
consensus_10229#0 --------------
consensus_10229#1 CAAGCAGCCCTTGA 759
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||