These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10229#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1032 fasta sequence [AAAGAAAAAAAACACACCATCACTCTCTCGCTCCCCATCGATCGGAGAAAATGGCAACCGCCGCCGCCGCCTCACGCGCCGCCCTCTCAAGGCCTCACGNCGCCGCCGCCGCG--GCGCGCGAGCCCCGCCGCGGGGGCGCGGGTGACGCTCCCGCGGCGCCGAAGCGTCCGATCCGCGGTGATCTCGTCGTCGGCGTCCGCGGCGGCG-GTGGCGGCGTCGGAGCCGGCGGCGGGGAGGGTGACGCTGGGCGCGGGGACGGACGGGGCGCTGTGGCCGAAGCCGGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGGTTCGCGGACGTGGAGTGCGCGTACGGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGCAGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTGGGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGCCTCGTCGTCAACGCCCCCACCGCCAACACCGTCGCCGCCGCCGAGCACGGCATCGCGCTCCTCGCCTCCATGGCGCGCAACGTCTCCCAGGCCGACGCCGCCCTCAAGGCCGACTGTCAGCGAGACACTGGGACAGATGAGCACTAGTACTTCTGTTGCAGTACAGAATTAGTACTACTACTCCACTAGTGGGCTAGTGGCAGTTTGTGGATAATTATCTGACATGGGAAATGGCAAAGAACCAAGTACGTTGGAGTTTCTCTGGTCGGGAAGACACTTGCGGTAATGGGCTTTGGCAAGGTTGGTTCAGAGGTAGCCAGGCGGGCGAAAGGGCTCGGTATGCATGTGATTGCTCATGATCCGTACGCCCCTGCCGATAGGGCTCGTGCCATTGGAGCTGAATTGGTCTCTTTCGATGAGGCCATTGGCAGAGCCGACTTCATCTCCCTTCACATGCCTCTCACCCCAGCAACATCCAAGGTCTTTCACGAC] [+] EMBL CB649297 [AAAGAAAAAAAACACACCATCACTCTCTCGCTCCCCATCGATCGGAGAAAATGGCAACCGCCGCCGCCGCCTCACGCGCCGCCCTCTCAAGGCCTCACGCCGCCGCCGCCGCGGCGCGCGCGAGCCCCGCCGCGGGGGCGCGGGTGACGCTCCCGCGGCGCCGAAGCGTCCGATCCGCGGTGATCTCGTCGTCGGCGTCCGCGGCGGCG GTGGCGGCGTCGGAGCCGGCGGCGGGGAGGGTGACGCTGGGCGCGGGGACGGACGGGGCGCTGTGGCCGAAGCCGGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGGTTCGCGGACGTGGAGTGCGCGTACGGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACTCGCTCATCGTGCGCAGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCG ] [+] EMBL AU197241 [ TCGCTCCCCATCGATCGGAGAAAATGGCAACCGCCGCCGCCGCCTCACGCGCCGCCCTCTCAAGGCCTCANGNCGCCGCCGCCGCG GCGCGCGAGCCCNGCCGCGGGGGCGCGGGTGACGCTCCCGCGGCGNCGAAGCGTCCGATCCGCGGTGATCTCGTCGTCGGNGTCCGCGGCGGCG GTGGCGGCGTCGGAGCCGGCGGCGNGGAGGGTGACGCTGGGCGCGGGGACGGACGGGGCGCTGTGGCCGAAGCCGGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGTGCTGGCGGTNCTGCGCGGGTTCG GGACGTGGAGTNCGCGTACGGGATNTCCCCCGCGGAGTTCCTCGCCAAGGTTGCGna ] [+] EMBL AU069450 [ catncnGCTCCCCATCGATCGGAGAAAATGGCAACCGACGCCGCCGCCTCACGCGCCGCCCTCTCAAGGCCTCACGNCGNCGCCGNCGCG GCGCGCGAGCCCCGNCGCGGGGGCGCGGGTGACGCTCCCGCGGCGCCGAAGCGTCCGATCCGCGGTGATCTCGTCGTCGGCGTCCGCGGCGGCGNTTGGCGGC ] [+] EMBL BP184355 [ TGACGCTGGGCGCGGGGACGGACGGGGCGCTGTGGCCGAAGCCGGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGGTTCGCGGACGTGGAGTGCGCGTACGGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGCAGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTGGGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGCCTCGTCGTCAACGCCCCCACCGCCAACACCGTCGCCGCCGCCGAGCACGGCATCGCGCTCCTCGCCTCCATGGCGCGCAACGTCTCCCAGGCCGACGCCGCCCT ] [+] EMBL BP184367 [ TGACGCTGGGCGCGGGGACGGACGGGGCGCTGTGGCCGAAGCCGGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGGTTCGCGGACGTGGAGTGCGCGTACGGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGCAGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTGGGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGCCTCGTCGACAACGCCCCCACCGCCAACACCGTCGCCGTCGTCGAGCACGGCATCGCGCTCCTCGCCTCCATGGCGC ] [+] EMBL CB683224 [ ACGGGGCGCTGTGGCCGAAGCCGGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGGTTCGCGGACGTGGAGTGCGCGTACGGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGCAGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTGGGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGCCTCGTCGTCAACGCCCCCACCGCCAACACCGTCGCCGCCGCCGAGCACGGCATCGCGCTCCTCGCCTCCATGGCGCGCAACGTCTCCCAGGCCGACGCCGCCCTCAAGGCCGACTGTCAGCGAGACACTGGGACAGATGAGCACTAGTACTTCTGTTGCAGTACAGAATTAGTACTACTACTCCACTAGTGGGCTAGTGGCAGTTTGTGGATAATTATCTGACATGGGAAATGGCAAAGAACCAAGTACGTTGGAGTTTCTCTGGTCGGGAAGACACTTGCGGTAATGGGCTTTGGCAAGGTTGGTTCAGAGGTAGCCAGGCGGGCGAAAGGGCTCGGTATGCATGTGATTGCTCATGATCCGTACGCCCCTGCCGATAGGGCTCGTGCCATTGGAGCTGAATTGGTCTCTTTCGATGAGGCCATTGGCAGAGCCGACTTCATCTCCCTTCACATGCCTCTCACCCCAGCAACATCCAAGGTCTTTCACGAC] consensusID : consensus_10229#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 759 fasta sequence [GGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGATTCGCGGACGTGGAGTGCGCGTACGGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGCAGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTGGGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGCCTCGTCGTCAACGCCCCCACCGCCAACACCGTCGCCGCCGCCGAGCACGGCATCGCGCTCCTCGCCTCCATGGCGCGCAACGTCTCCCAGGCCGACGCCGCCCTCAAGGCCGGGAAATGGCAAAGAACCAAGTACGTTGGAGTTTCTCTGGTTGGGAAGACACTTGCGGTCATGGGCTTTGGCAAGGTTGGTTCAGAGGTAGCCAGGCGGGCGAAAGGGCTCGGTATGCATGTGATTGCTCATGATCCGTACGCCCCTGCCGATAGGGCTCGTGCCATTGGAGCTGAACTGGTCTCTTTCGATGAGGCCATTGGCAGAGCCGACTTCATCTCCCTTCACATGCCTCTCACCCCAGCAACATCCAAGGTCTTCAACGACGAATCCTTTGCTAAGATGAAGAATGGAGTTCGGATCATCAATGTGGCCAGGGGTGGAGTGATCGACGAAGATGCTCTTGTCAGAGCCCTTGACTCTGGCAAAGTTGCTCAAGCAGCCCTTGA] [+] EMBL CB624078 [GGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGATTCGCGGACGTGGAGTGCGCGTACGGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGCAGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTGGGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGCCTCGTCGTCAACGCCCCCACCGCCAACACCGTCGCCGCCGCCGAGCACGGCATCGCGCTCCTCGCCTCCATGGCGCGCAACGTCTCCCAGGCCGACGCCGCCCTCAAGGCCGGGAAATGGCAAAGAACCAAGTACGTTGGAGTTTCTCTGGTTGGGAAGACACTTGCGGTCATGGGCTTTGGCAAGGTTGGTTCAGAGGTAGCCAGGCGGGCGAAAGGGCTCGGTATGCATGTGATTGCTCATGATCCGTACGCCCCTGCCGATAGGGCTCGTGCCATTGGAGCTGAACTGGTCTCTTTCGATGAGGCCATTGGCAGAGCCGACTTCATCTCCCTTCACATGCCTCTCACCCCAGCAACATCCAAGGTCTTCAACGACGAATCCTTTGCTAAGATGAAGAATGGAGTTCGGATCATCAATGTGGCCAGGGGTGGAGTGATCGACGAAGATGCTCTTGTCAGAGCCCTTGACTCTGGCAAAGTTGCTCAAGCAGCCCTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10229#0 AAAGAAAAAAAACACACCATCACTCTCTCGCTCCCCATCGATCGGAGAAAATGGCAACCG 60 consensus_10229#1 ------------------------------------------------------------ consensus_10229#0 CCGCCGCCGCCTCACGCGCCGCCCTCTCAAGGCCTCACGNCGCCGCCGCCGCGGCGCGCG 120 consensus_10229#1 ------------------------------------------------------------ consensus_10229#0 AGCCCCGCCGCGGGGGCGCGGGTGACGCTCCCGCGGCGCCGAAGCGTCCGATCCGCGGTG 180 consensus_10229#1 ------------------------------------------------------------ consensus_10229#0 ATCTCGTCGTCGGCGTCCGCGGCGGCGGTGGCGGCGTCGGAGCCGGCGGCGGGGAGGGTG 240 consensus_10229#1 ------------------------------------------------------------ consensus_10229#0 ACGCTGGGCGCGGGGACGGACGGGGCGCTGTGGCCGAAGCCGGCGGTGCTGGTGGCGGAG 300 consensus_10229#1 -----------------------------------------GGCGGTGCTGGTGGCGGAG 19 ******************* consensus_10229#0 AAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGGTTCGCGGACGTGGAGTGCGCGTAC 360 consensus_10229#1 AAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGATTCGCGGACGTGGAGTGCGCGTAC 79 *********************************** ************************ consensus_10229#0 GGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGC 420 consensus_10229#1 GGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGC 139 ************************************************************ consensus_10229#0 AGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTG 480 consensus_10229#1 AGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTG 199 ************************************************************ consensus_10229#0 GGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGC 540 consensus_10229#1 GGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGC 259 ************************************************************ consensus_10229#0 CTCGTCGTCAACGCCCCCACCGCCAACACCGTCGCCGCCGCCGAGCACGGCATCGCGCTC 600 consensus_10229#1 CTCGTCGTCAACGCCCCCACCGCCAACACCGTCGCCGCCGCCGAGCACGGCATCGCGCTC 319 ************************************************************ consensus_10229#0 CTCGCCTCCATGGCGCGCAACGTCTCCCAGGCCGACGCCGCCCTCAAGGCCGACTGTCAG 660 consensus_10229#1 CTCGCCTCCATGGCGCGCAACGTCTCCCAGGCCGACGCCGCCCTCAAGGCCG-------- 371 **************************************************** consensus_10229#0 CGAGACACTGGGACAGATGAGCACTAGTACTTCTGTTGCAGTACAGAATTAGTACTACTA 720 consensus_10229#1 ------------------------------------------------------------ consensus_10229#0 CTCCACTAGTGGGCTAGTGGCAGTTTGTGGATAATTATCTGACATGGGAAATGGCAAAGA 780 consensus_10229#1 ----------------------------------------------GGAAATGGCAAAGA 385 ************** consensus_10229#0 ACCAAGTACGTTGGAGTTTCTCTGGTCGGGAAGACACTTGCGGTAATGGGCTTTGGCAAG 840 consensus_10229#1 ACCAAGTACGTTGGAGTTTCTCTGGTTGGGAAGACACTTGCGGTCATGGGCTTTGGCAAG 445 ************************** ***************** *************** consensus_10229#0 GTTGGTTCAGAGGTAGCCAGGCGGGCGAAAGGGCTCGGTATGCATGTGATTGCTCATGAT 900 consensus_10229#1 GTTGGTTCAGAGGTAGCCAGGCGGGCGAAAGGGCTCGGTATGCATGTGATTGCTCATGAT 505 ************************************************************ consensus_10229#0 CCGTACGCCCCTGCCGATAGGGCTCGTGCCATTGGAGCTGAATTGGTCTCTTTCGATGAG 960 consensus_10229#1 CCGTACGCCCCTGCCGATAGGGCTCGTGCCATTGGAGCTGAACTGGTCTCTTTCGATGAG 565 ****************************************** ***************** consensus_10229#0 GCCATTGGCAGAGCCGACTTCATCTCCCTTCACATGCCTCTCACCCCAGCAACATCCAAG 1020 consensus_10229#1 GCCATTGGCAGAGCCGACTTCATCTCCCTTCACATGCCTCTCACCCCAGCAACATCCAAG 625 ************************************************************ consensus_10229#0 GTCTTTCACGAC------------------------------------------------ 1032 consensus_10229#1 GTCTTCAACGACGAATCCTTTGCTAAGATGAAGAATGGAGTTCGGATCATCAATGTGGCC 685 ***** ***** consensus_10229#0 ------------------------------------------------------------ consensus_10229#1 AGGGGTGGAGTGATCGACGAAGATGCTCTTGTCAGAGCCCTTGACTCTGGCAAAGTTGCT 745 consensus_10229#0 -------------- consensus_10229#1 CAAGCAGCCCTTGA 759 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||