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Oryza sativa
cluster # 10229 cluster # 10229       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10229#0 length = 1032 sequences # 6  
consensus_10229#1 length = 759 sequences # 1  

consensusID : consensus_10229#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1032
fasta sequence
                              [AAAGAAAAAAAACACACCATCACTCTCTCGCTCCCCATCGATCGGAGAAAATGGCAACCGCCGCCGCCGCCTCACGCGCCGCCCTCTCAAGGCCTCACGNCGCCGCCGCCGCG--GCGCGCGAGCCCCGCCGCGGGGGCGCGGGTGACGCTCCCGCGGCGCCGAAGCGTCCGATCCGCGGTGATCTCGTCGTCGGCGTCCGCGGCGGCG-GTGGCGGCGTCGGAGCCGGCGGCGGGGAGGGTGACGCTGGGCGCGGGGACGGACGGGGCGCTGTGGCCGAAGCCGGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGGTTCGCGGACGTGGAGTGCGCGTACGGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGCAGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTGGGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGCCTCGTCGTCAACGCCCCCACCGCCAACACCGTCGCCGCCGCCGAGCACGGCATCGCGCTCCTCGCCTCCATGGCGCGCAACGTCTCCCAGGCCGACGCCGCCCTCAAGGCCGACTGTCAGCGAGACACTGGGACAGATGAGCACTAGTACTTCTGTTGCAGTACAGAATTAGTACTACTACTCCACTAGTGGGCTAGTGGCAGTTTGTGGATAATTATCTGACATGGGAAATGGCAAAGAACCAAGTACGTTGGAGTTTCTCTGGTCGGGAAGACACTTGCGGTAATGGGCTTTGGCAAGGTTGGTTCAGAGGTAGCCAGGCGGGCGAAAGGGCTCGGTATGCATGTGATTGCTCATGATCCGTACGCCCCTGCCGATAGGGCTCGTGCCATTGGAGCTGAATTGGTCTCTTTCGATGAGGCCATTGGCAGAGCCGACTTCATCTCCCTTCACATGCCTCTCACCCCAGCAACATCCAAGGTCTTTCACGAC]

[+] EMBL CB649297             [AAAGAAAAAAAACACACCATCACTCTCTCGCTCCCCATCGATCGGAGAAAATGGCAACCGCCGCCGCCGCCTCACGCGCCGCCCTCTCAAGGCCTCACGCCGCCGCCGCCGCGGCGCGCGCGAGCCCCGCCGCGGGGGCGCGGGTGACGCTCCCGCGGCGCCGAAGCGTCCGATCCGCGGTGATCTCGTCGTCGGCGTCCGCGGCGGCG GTGGCGGCGTCGGAGCCGGCGGCGGGGAGGGTGACGCTGGGCGCGGGGACGGACGGGGCGCTGTGGCCGAAGCCGGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGGTTCGCGGACGTGGAGTGCGCGTACGGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACTCGCTCATCGTGCGCAGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU197241             [                           TCGCTCCCCATCGATCGGAGAAAATGGCAACCGCCGCCGCCGCCTCACGCGCCGCCCTCTCAAGGCCTCANGNCGCCGCCGCCGCG  GCGCGCGAGCCCNGCCGCGGGGGCGCGGGTGACGCTCCCGCGGCGNCGAAGCGTCCGATCCGCGGTGATCTCGTCGTCGGNGTCCGCGGCGGCG GTGGCGGCGTCGGAGCCGGCGGCGNGGAGGGTGACGCTGGGCGCGGGGACGGACGGGGCGCTGTGGCCGAAGCCGGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGTGCTGGCGGTNCTGCGCGGGTTCG GGACGTGGAGTNCGCGTACGGGATNTCCCCCGCGGAGTTCCTCGCCAAGGTTGCGna                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU069450             [                       catncnGCTCCCCATCGATCGGAGAAAATGGCAACCGACGCCGCCGCCTCACGCGCCGCCCTCTCAAGGCCTCACGNCGNCGCCGNCGCG  GCGCGCGAGCCCCGNCGCGGGGGCGCGGGTGACGCTCCCGCGGCGCCGAAGCGTCCGATCCGCGGTGATCTCGTCGTCGGCGTCCGCGGCGGCGNTTGGCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BP184355             [                                                                                                                                                                                                                                                 TGACGCTGGGCGCGGGGACGGACGGGGCGCTGTGGCCGAAGCCGGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGGTTCGCGGACGTGGAGTGCGCGTACGGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGCAGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTGGGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGCCTCGTCGTCAACGCCCCCACCGCCAACACCGTCGCCGCCGCCGAGCACGGCATCGCGCTCCTCGCCTCCATGGCGCGCAACGTCTCCCAGGCCGACGCCGCCCT                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BP184367             [                                                                                                                                                                                                                                                 TGACGCTGGGCGCGGGGACGGACGGGGCGCTGTGGCCGAAGCCGGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGGTTCGCGGACGTGGAGTGCGCGTACGGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGCAGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTGGGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGCCTCGTCGACAACGCCCCCACCGCCAACACCGTCGCCGTCGTCGAGCACGGCATCGCGCTCCTCGCCTCCATGGCGC                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB683224             [                                                                                                                                                                                                                                                                      ACGGGGCGCTGTGGCCGAAGCCGGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGGTTCGCGGACGTGGAGTGCGCGTACGGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGCAGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTGGGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGCCTCGTCGTCAACGCCCCCACCGCCAACACCGTCGCCGCCGCCGAGCACGGCATCGCGCTCCTCGCCTCCATGGCGCGCAACGTCTCCCAGGCCGACGCCGCCCTCAAGGCCGACTGTCAGCGAGACACTGGGACAGATGAGCACTAGTACTTCTGTTGCAGTACAGAATTAGTACTACTACTCCACTAGTGGGCTAGTGGCAGTTTGTGGATAATTATCTGACATGGGAAATGGCAAAGAACCAAGTACGTTGGAGTTTCTCTGGTCGGGAAGACACTTGCGGTAATGGGCTTTGGCAAGGTTGGTTCAGAGGTAGCCAGGCGGGCGAAAGGGCTCGGTATGCATGTGATTGCTCATGATCCGTACGCCCCTGCCGATAGGGCTCGTGCCATTGGAGCTGAATTGGTCTCTTTCGATGAGGCCATTGGCAGAGCCGACTTCATCTCCCTTCACATGCCTCTCACCCCAGCAACATCCAAGGTCTTTCACGAC]


>consensus_10229#0 AAAGAAAAAAAACACACCATCACTCTCTCGCTCCCCATCGATCGGAGAAAATGGCAACCG CCGCCGCCGCCTCACGCGCCGCCCTCTCAAGGCCTCACGNCGCCGCCGCCGCGGCGCGCG AGCCCCGCCGCGGGGGCGCGGGTGACGCTCCCGCGGCGCCGAAGCGTCCGATCCGCGGTG ATCTCGTCGTCGGCGTCCGCGGCGGCGGTGGCGGCGTCGGAGCCGGCGGCGGGGAGGGTG ACGCTGGGCGCGGGGACGGACGGGGCGCTGTGGCCGAAGCCGGCGGTGCTGGTGGCGGAG AAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGGTTCGCGGACGTGGAGTGCGCGTAC GGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGC AGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTG GGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGC CTCGTCGTCAACGCCCCCACCGCCAACACCGTCGCCGCCGCCGAGCACGGCATCGCGCTC CTCGCCTCCATGGCGCGCAACGTCTCCCAGGCCGACGCCGCCCTCAAGGCCGACTGTCAG CGAGACACTGGGACAGATGAGCACTAGTACTTCTGTTGCAGTACAGAATTAGTACTACTA CTCCACTAGTGGGCTAGTGGCAGTTTGTGGATAATTATCTGACATGGGAAATGGCAAAGA ACCAAGTACGTTGGAGTTTCTCTGGTCGGGAAGACACTTGCGGTAATGGGCTTTGGCAAG GTTGGTTCAGAGGTAGCCAGGCGGGCGAAAGGGCTCGGTATGCATGTGATTGCTCATGAT CCGTACGCCCCTGCCGATAGGGCTCGTGCCATTGGAGCTGAATTGGTCTCTTTCGATGAG GCCATTGGCAGAGCCGACTTCATCTCCCTTCACATGCCTCTCACCCCAGCAACATCCAAG GTCTTTCACGAC



consensusID : consensus_10229#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 759
fasta sequence
                              [GGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGATTCGCGGACGTGGAGTGCGCGTACGGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGCAGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTGGGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGCCTCGTCGTCAACGCCCCCACCGCCAACACCGTCGCCGCCGCCGAGCACGGCATCGCGCTCCTCGCCTCCATGGCGCGCAACGTCTCCCAGGCCGACGCCGCCCTCAAGGCCGGGAAATGGCAAAGAACCAAGTACGTTGGAGTTTCTCTGGTTGGGAAGACACTTGCGGTCATGGGCTTTGGCAAGGTTGGTTCAGAGGTAGCCAGGCGGGCGAAAGGGCTCGGTATGCATGTGATTGCTCATGATCCGTACGCCCCTGCCGATAGGGCTCGTGCCATTGGAGCTGAACTGGTCTCTTTCGATGAGGCCATTGGCAGAGCCGACTTCATCTCCCTTCACATGCCTCTCACCCCAGCAACATCCAAGGTCTTCAACGACGAATCCTTTGCTAAGATGAAGAATGGAGTTCGGATCATCAATGTGGCCAGGGGTGGAGTGATCGACGAAGATGCTCTTGTCAGAGCCCTTGACTCTGGCAAAGTTGCTCAAGCAGCCCTTGA]

[+] EMBL CB624078             [GGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGATTCGCGGACGTGGAGTGCGCGTACGGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGCAGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTGGGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGCCTCGTCGTCAACGCCCCCACCGCCAACACCGTCGCCGCCGCCGAGCACGGCATCGCGCTCCTCGCCTCCATGGCGCGCAACGTCTCCCAGGCCGACGCCGCCCTCAAGGCCGGGAAATGGCAAAGAACCAAGTACGTTGGAGTTTCTCTGGTTGGGAAGACACTTGCGGTCATGGGCTTTGGCAAGGTTGGTTCAGAGGTAGCCAGGCGGGCGAAAGGGCTCGGTATGCATGTGATTGCTCATGATCCGTACGCCCCTGCCGATAGGGCTCGTGCCATTGGAGCTGAACTGGTCTCTTTCGATGAGGCCATTGGCAGAGCCGACTTCATCTCCCTTCACATGCCTCTCACCCCAGCAACATCCAAGGTCTTCAACGACGAATCCTTTGCTAAGATGAAGAATGGAGTTCGGATCATCAATGTGGCCAGGGGTGGAGTGATCGACGAAGATGCTCTTGTCAGAGCCCTTGACTCTGGCAAAGTTGCTCAAGCAGCCCTTGA]


>consensus_10229#1 GGCGGTGCTGGTGGCGGAGAAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGATTCGC GGACGTGGAGTGCGCGTACGGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTT CGACGCGCTCATCGTGCGCAGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCG CGGGCGGCTGCGCGTGGTGGGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGC CGCCACCGAGGCCGGCTGCCTCGTCGTCAACGCCCCCACCGCCAACACCGTCGCCGCCGC CGAGCACGGCATCGCGCTCCTCGCCTCCATGGCGCGCAACGTCTCCCAGGCCGACGCCGC CCTCAAGGCCGGGAAATGGCAAAGAACCAAGTACGTTGGAGTTTCTCTGGTTGGGAAGAC ACTTGCGGTCATGGGCTTTGGCAAGGTTGGTTCAGAGGTAGCCAGGCGGGCGAAAGGGCT CGGTATGCATGTGATTGCTCATGATCCGTACGCCCCTGCCGATAGGGCTCGTGCCATTGG AGCTGAACTGGTCTCTTTCGATGAGGCCATTGGCAGAGCCGACTTCATCTCCCTTCACAT GCCTCTCACCCCAGCAACATCCAAGGTCTTCAACGACGAATCCTTTGCTAAGATGAAGAA TGGAGTTCGGATCATCAATGTGGCCAGGGGTGGAGTGATCGACGAAGATGCTCTTGTCAG AGCCCTTGACTCTGGCAAAGTTGCTCAAGCAGCCCTTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10229#0      AAAGAAAAAAAACACACCATCACTCTCTCGCTCCCCATCGATCGGAGAAAATGGCAACCG 60
consensus_10229#1      ------------------------------------------------------------
                                                                                   

consensus_10229#0      CCGCCGCCGCCTCACGCGCCGCCCTCTCAAGGCCTCACGNCGCCGCCGCCGCGGCGCGCG 120
consensus_10229#1      ------------------------------------------------------------
                                                                                   

consensus_10229#0      AGCCCCGCCGCGGGGGCGCGGGTGACGCTCCCGCGGCGCCGAAGCGTCCGATCCGCGGTG 180
consensus_10229#1      ------------------------------------------------------------
                                                                                   

consensus_10229#0      ATCTCGTCGTCGGCGTCCGCGGCGGCGGTGGCGGCGTCGGAGCCGGCGGCGGGGAGGGTG 240
consensus_10229#1      ------------------------------------------------------------
                                                                                   

consensus_10229#0      ACGCTGGGCGCGGGGACGGACGGGGCGCTGTGGCCGAAGCCGGCGGTGCTGGTGGCGGAG 300
consensus_10229#1      -----------------------------------------GGCGGTGCTGGTGGCGGAG 19
                                                                *******************

consensus_10229#0      AAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGGTTCGCGGACGTGGAGTGCGCGTAC 360
consensus_10229#1      AAGCTGAGCGAGGCCGGGCTGGCGGTGCTGCGCGGATTCGCGGACGTGGAGTGCGCGTAC 79
                       *********************************** ************************

consensus_10229#0      GGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGC 420
consensus_10229#1      GGGATGTCCCCCGCGGAGCTCCTCGCCAAGGTGGCGCAGTTCGACGCGCTCATCGTGCGC 139
                       ************************************************************

consensus_10229#0      AGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTG 480
consensus_10229#1      AGCGGCACCAAGGTGACGAGGGAGGTGCTGGAGGCCGGGCGCGGGCGGCTGCGCGTGGTG 199
                       ************************************************************

consensus_10229#0      GGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGC 540
consensus_10229#1      GGCCGCGCCGGCGTCGGGATCGACAACGTCGACCTCCAGGCCGCCACCGAGGCCGGCTGC 259
                       ************************************************************

consensus_10229#0      CTCGTCGTCAACGCCCCCACCGCCAACACCGTCGCCGCCGCCGAGCACGGCATCGCGCTC 600
consensus_10229#1      CTCGTCGTCAACGCCCCCACCGCCAACACCGTCGCCGCCGCCGAGCACGGCATCGCGCTC 319
                       ************************************************************

consensus_10229#0      CTCGCCTCCATGGCGCGCAACGTCTCCCAGGCCGACGCCGCCCTCAAGGCCGACTGTCAG 660
consensus_10229#1      CTCGCCTCCATGGCGCGCAACGTCTCCCAGGCCGACGCCGCCCTCAAGGCCG-------- 371
                       ****************************************************        

consensus_10229#0      CGAGACACTGGGACAGATGAGCACTAGTACTTCTGTTGCAGTACAGAATTAGTACTACTA 720
consensus_10229#1      ------------------------------------------------------------
                                                                                   

consensus_10229#0      CTCCACTAGTGGGCTAGTGGCAGTTTGTGGATAATTATCTGACATGGGAAATGGCAAAGA 780
consensus_10229#1      ----------------------------------------------GGAAATGGCAAAGA 385
                                                                     **************

consensus_10229#0      ACCAAGTACGTTGGAGTTTCTCTGGTCGGGAAGACACTTGCGGTAATGGGCTTTGGCAAG 840
consensus_10229#1      ACCAAGTACGTTGGAGTTTCTCTGGTTGGGAAGACACTTGCGGTCATGGGCTTTGGCAAG 445
                       ************************** ***************** ***************

consensus_10229#0      GTTGGTTCAGAGGTAGCCAGGCGGGCGAAAGGGCTCGGTATGCATGTGATTGCTCATGAT 900
consensus_10229#1      GTTGGTTCAGAGGTAGCCAGGCGGGCGAAAGGGCTCGGTATGCATGTGATTGCTCATGAT 505
                       ************************************************************

consensus_10229#0      CCGTACGCCCCTGCCGATAGGGCTCGTGCCATTGGAGCTGAATTGGTCTCTTTCGATGAG 960
consensus_10229#1      CCGTACGCCCCTGCCGATAGGGCTCGTGCCATTGGAGCTGAACTGGTCTCTTTCGATGAG 565
                       ****************************************** *****************

consensus_10229#0      GCCATTGGCAGAGCCGACTTCATCTCCCTTCACATGCCTCTCACCCCAGCAACATCCAAG 1020
consensus_10229#1      GCCATTGGCAGAGCCGACTTCATCTCCCTTCACATGCCTCTCACCCCAGCAACATCCAAG 625
                       ************************************************************

consensus_10229#0      GTCTTTCACGAC------------------------------------------------ 1032
consensus_10229#1      GTCTTCAACGACGAATCCTTTGCTAAGATGAAGAATGGAGTTCGGATCATCAATGTGGCC 685
                       *****  *****                                                

consensus_10229#0      ------------------------------------------------------------
consensus_10229#1      AGGGGTGGAGTGATCGACGAAGATGCTCTTGTCAGAGCCCTTGACTCTGGCAAAGTTGCT 745
                                                                                   

consensus_10229#0      --------------
consensus_10229#1      CAAGCAGCCCTTGA 759
                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)