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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10231#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1578 fasta sequence
[CCGCACCATCTCTCCAGTCTCCATCCTTGATGGTCTCCTTGCTCCCCCGCGCGCCCTGCCTCGCCTCCTCCATCCCCAAGCCCACCGCCCTTCGGCCGCCGTGCATGGCGTCCACATCCGCCGCGGCCCCTGCCGCTGCAGCGGCGACGGCGGAGGCGTCCGCGTCCCGGCCGCCGAGGAAGCTGCCGGTGCTGCTGTTCGACGTCATGGACACCGTCGTCCGCGACCCCTTCTACCACCACATACCGGCCTTCTTCCAAATGTCAATGAAGGAACTCCTCGAAAACAAGCATCCAACAGCATGGTCTGAATTTGAGATGGGTCTAATTGATGAGAATGAACTGGCCAAAAAGTTCTTCAATGATGGCAGGTCTTTTGATTTGGAAGGTTTGAAAGCATGCATGGTGAGGGCATATGAGTACATCGATGGTGTTGAAGACATTCTTTACAGTTTGAAGCAAAATAACTATGAAGTGCAT-GCATTTACAAATTATCCAGTGTGGTACCAGTTAGTTGAGGAGAAGTTAAAGCTCTCAAAGTATTTGTCCTGGACATTCTGTTCATGCACAGTTGGTAAGCGCAAACCTTCGCCTGATTTTTATCTACATGCTGTGGACCACCTAAACGTTGATCCAGCAAGCTGCATATTCATTGATGACAGGATGACAAACATTGAAGCAGCCCTTAGTGTAGGAATGGTTGGTTTGCAATTTAAAAATGCTGAGGTGCTCAAGAAGGATTTATGCTCGCTTGGAGTTGAATTTGCA-CCTGTGCATGAAGGTGAAATACAAGTCCAATAAGGTTGCACTTTGTTAACTCTTCTGCTCATGTGTATAAAATTCATATATCTGACCCTTCTGTCTTCTGAACCTTGTCAATAACATGAAGA-CCCCTGATTGTTGCAGATATAAACTACTAATATATTTTGTTTATTCAAGTGTGCGAATTCTCAAAGCATTCATTAGCTTCCATGTTTCCAACAAGTAAAGGTGAACAAAATACCAATGGCTTGGAATACATGCCAGTGCTTAATCAATAGAACTTTACCACAATCTCTGTTCAGGATAAAGATAAATCATCTTGAACTAACTTTAGGTTAAATTATTTATCTATCTAATACTAGACTAATCCAGACAAACTTGTGCTTGGATCAGGTGTAGCTCATGCACACGTTGTTAGCGCTTAAAAAATGGAAACATGGTTAGCGCTTAAAAAATCCAGAGTTAATTAAATGAGCCCCAGATTCAAGCATAGTAATTTGCTTAAAGCTAGGTAAAGAACAGCCTGAGCTAGCTGGCTTGAGCCAAAAAAGGATAGTTTTGAGGAACAAGAACAAACAGGCTCAATCATGTGTTAACTGTTAACTCAAAGCTTGATCAATAATCCATCAACTCAAAGCTGTGACTGCATTTTATTGGTTCAATAATCAAGATCCTAAGTAACTATGTTTTGTCAGAGTGATCGCCAATTAATATTCAAGGTCTTGCATTAAATTATAATGGATGATCATATGTATCTGTTATGCTTTCATAATTAAGAGTATCTCTGAAACTCCATGTTCCTCTCAAAAAAAAAAAA]
[+] EMBL CB668381 [CCGCACCATCTCTCCAGTCTCCATCCTTGATGGTCTCCTTGCTCCCCCGCGCGCCCTGCCTCGCCTCCTCCATCCCCAAGCCCACCGCCCTTCGGCCGCCGTGCATGGCGTCCACATCCGCCGCGGCCCCTGCCGCTGCAGCGGCGACGGCGGAGGCGTCCGCGTCCCGGCCGCCGAGGAAGCTGCCGGTGCTGCTGTTCGACGTCATGGACACCGTCGTCCGCGACCCCTTCTACCACCACATACCGGCCTTCTTCCAAATGTCAATGAAGGAACTCCTCGAAAACAAGCATCCAACAGCATGGTCTGAATTTGAGATGGGTCTAATTGATGAGAATGAACTGGCCAAAAAGTTCTTCAATGATGGCAGGTCTTTTGATTTGGAAGGTTTGAAAGCATGCATGGTGAGGGCATATGAGTACATCGATGGTGTTGAAGACATTCTTTACAGTTTGAAGCAAAATAACTATGAAGTGCAT GCATTTACAAATTATCCAGTGTGGTACCAGTTAGTTGAGGAGAAGTTAAAGCTCTCAAAGTATTTGTCCTGGACATTCTGTTCATGCACAGTTGGTAAGCGCAAACCTTCGCCTGATTTTTATCTACATGCTGTGGACCACCTAAACGTTGATCCAGCAAGCTGCATATTCATTGATGACAGGATGACAAACATTGAAGCAGCCCTTAGTGTAGGAATGGTTGGTTTGCAATTTAAAAATGCTGAGGTGCTCAAGAAGGATTTATGCTCGCTTGGAGTTGAATTTGCA CCTGTGCATGAAAGTGAAA ACAAGTCCAATAAGGTTGCACTTTGTTAACTCTTCTGCTCATGTGTATAAAATTCATA ]
[-] EMBL CB668382 [ GCGGAGGCGTCCGCGTCCCGGCCGCCGAGGAAGCTGCCGGTGCTGCTGTTCGACGTCATGGACACCGTCGTCCGCGACCCCTTCTACCACCACATACCGGCCTTCTTCCAAATGTCAATGAAGGAACTCCTCGAAAACAAGCATCCAACAGCATGGTCTGAATTTGAGATGGGTCTAATTGATGAGAATGAACTGGCCAAAAAGTTCTTCAATGATGGCAGGTCTTTTGATTTGGAAGGTTTGAAAGCATGCATGGTGAGGGCATATGAGTACATCGATGGTGTTGAAGACATTCTTTACAGTTTGAAGCAAAATAACTATGAAGTGCAT GCATTTACAAATTATCCAGTGTGGTACCAGTTAGTTGAGGAGAAGTTAAAGCTCTCAAAGTATTTGTCCTGGACATTCTGTTCATGCACAGTTGGTAAGCGCAAACCTTCGCCTGATTTTTATCTACATGCTGTGGACCACCTAAACGTTGATCCAGCAAGCTGCATATTCATTGATGACAGGATGACAAACATTGAAGCAGCCCTTAGTGTAGGAATGGTTGGTTTGCAATTTAAAAATGCTGAGGTGCTCAAGAAGGATTTATGCTCGCTTGGAGTTGAATTTGCA CCTGTGCATGAAGGTGAAATACAAGTCCAATAAGGTTGCACTTTGTTAACTCTTCTGCTCATGTGTATAAAATTCATATATCTGACCCTTCTGTCTTCTGAACCTTGTCAATAACATGAAGA CCCCTGATTGTTGCAGATATAAGCTACTAATATATTTTGTTTATTCAAGTGTGCG ]
[-] EMBL CB652111 [ CCACCACATACCGGCCTTCTTCCAAATGTCAATGAAGGAACTCCTCGAAAACAAGCATCCAACAGCATGGTCTGAATTTGAGATGGGTCTAATTGATGAGAATGAACTGGCCAAAAAGTTCTTCAATGATGGCAGGTCTTTTGATTTGGAAGGTTTGAAAGCATGCATGGTGAGGGCATATGAGTACATCGATGGTGTTGAAGACATTCTTTACAGTTTGAAGCAAAATAACTATGAAGTGCAT GCATTTACAAATTATCCAGTGTGGTACCAGTTAGTTGAGGAGAAGTTAAAGCTCTCAAAGTATTTGTCCTGGACATTCTGTTCATGCACAGTTGGTAAGCGCAAACCTTCGCCTGATTTTTATCTACATGCTGTGGACCACCTAAACGTTGATCCAGCAAGCTGCATATTCATTGATGACAGGATGACAAACATTGAAGCAGCCCTTAGTGTAGGAATGGTTGGTTTGCAATTTAAAAATGCTGAGGTGCTCAAGAAGGATTTATGCTCGCTTGGAGTTGAATTTGCA CCTGTGCATGAAGGTGAAATACAAGTCCAATAAGGTTGCACTTTGTTAACTCTTCTGCTCATGTGTATAAAATTCATATATCTGACCCTTCTGTCTTCTGAACCTTGTCAATAACATGAAGA CCCCTGATTGTTGCAAATATAAACTACTAATAAAGTTGGTTTATTCAAGTGT ]
[+] EMBL BI803625 [ AATAACTATGAAGTGCATCGCATTTACCAATTATCCAGTGTGGTACCAGTTAGTTGAGGAGAAGTTAAAGCTCTCAAAGTATTTGTCCTGGACATTCTGTTCATGCACAGTTGGTAAGCGCAAACCTTCGCCTGATTTTTATCTACATGCTGTGGACCACCTAAACGTTGATCCAGCAAGCTGCATATTCATTGATGACAGGATGACCAACCTTGAAGCAGCCCTTAGTGTAGGAATGGTTGGTTTGCAATTTAAAAATGCTGAGGTGCTCAAGAAGGATTTATGCTCGCTTGGAGTTGAATTTGCACCCTGTGCATGAAGGTGAAATACAAGTCCCATAAGGTTGCACTTTGTTAACTCTTCTGCTCATGTGTATAAAATTCATATATCTGACCCTTCTGTCTTCTGAACCTTGTCAATAACATGAAGA CCCCTGATTGTT CAGATATAAACTACTAATATATTTTGTTTATTCAAaaaaaaaa ]
[+] EMBL AK060426 [ ATGACAAACATTGAAGCAGCCCTTAGTGTAGGAATGGTTGGTTTGCAATTTAAAAATGCTGAGGTGCTCAAGAAGGATTTATGCTCGCTTGGAGTTGAATTTGCA CCTGTGCATGAAGGTGAAATACAAGTCCAATAAGGTTGCACTTTGTTAACTCTTCTGCTCATGTGTATAAAATTCATATATCTGACCCTTCTGTCTTCTGAACCTTGTCAATAACATGAAGA CCCCTGATTG ]
[-] EMBL CA760728 [ GAAGACCCCCTGATTGTTGCAGATATAAACTACTAATATATTTTGTTTATTCAAGTGTGCGTATTCTCAAAGCATTCATTAGCTTCCATGTTTCCAACAAGTAAAGGTGAACAAAATACCAATGGCTTGGAATACATGCCAGTGCTTAATCAATAGAACTTTACCACAATCTCTGTTCAGGATAAAGATAAATCATCTTGAACTAACTTTAGGTTAAATTATTTATCTATCTAATACTAGACTAATCCAGACAAACTTGTGCTTGGATCAGGTGTAGCTCATGCACACGTTGTTAGCGCTTAAAAAATGGAAACATGGTTAGCGCTTAAAAAATCCAGAGTTAATTAAATGAGCCCCAGATTCAAGCATAGTAATTTGCTTAAAGCTAGGTAAAGAACAGCCTGAGCTAGCTGGCTTGAGCCAAAAAAGGATAGTTTTGAGGAACAAGAACAAACAGGCTCAATCATGTGTTAACTGTTAACTCAAAGCTTGATCAATAATCCATCAACTCAAAGCTGTGACTGCATTTTATTGGTTCAATAATCAAGATCCTAAGTAACTATGTTTTGTCAGAGTGATCGCCAATTAATATTCAAGGTCTTGCATTAAATTATAATGGATGATCATATGTATCTGTTATGCTTTCATAATTAAGAGTATCTCTGAAACTCCATGTTCCTCTCAAAAAAAAAAAA]
consensusID : consensus_10231#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 740 fasta sequence
[TGCTGCTGTTCGACGTCATGGACACCGTCGTCCGCGACCCCTTCTACCACCACATACCGGCCTTCTTCCAAATGTCAATGAAGGAACTCCTCGAAAACAAGCATCCAACAGCATGGTCTGAATTTGAGATGGGTCTAATTGATGAGAATGAACTGGCCAAAAAGTTCTTCAATGATGGCAGGTCTTTTGATTTGGAAGGTTTGAAAGCATGCATGGTGAGGGCATATGAGTACATCGATGGTGTTGAAGACATTCTTTACAGTTTGAAGCAAAATAACTATGAAGTGCATGCATTTACAAATTATCCAGTGTGGTACCAGTTAGTTGAGGAGAAGTTAAAGCTCTCAAAGTATTTGTCCTGGACATTCTGTTCATGCACAGTTGGTAAGCGCAAACCTTCGCCTGATTTTTATCTACATGCTGTGGACCACCTAAACGTTGATCCAGCAAGCTGCATATTCATTGATGACAGGATGACAAACATTGAAGCAGCCCTTAGTGTAGGAATGGTTGGTTTGCAATTTAAAAATGCTGAGGTGCTCAAGAAGGATTTATGCTCGCTTGGAGTTGAATTTGCACCTGTGCATGAAGGTGAAATACAAGTCCAATAAGGTTGCACTTTGTTAACTCTTCTGCTCATGTGTATAAAATTCATATATGGGACCCTTCTGTCTTCTGAACCTTGTCAATAACATGAAGACCCAGAGTGATTGAGAGAGAGAGAGAGTGAGAGGGAGAGA]
[-] EMBL CB652110 [TGCTGCTGTTCGACGTCATGGACACCGTCGTCCGCGACCCCTTCTACCACCACATACCGGCCTTCTTCCAAATGTCAATGAAGGAACTCCTCGAAAACAAGCATCCAACAGCATGGTCTGAATTTGAGATGGGTCTAATTGATGAGAATGAACTGGCCAAAAAGTTCTTCAATGATGGCAGGTCTTTTGATTTGGAAGGTTTGAAAGCATGCATGGTGAGGGCATATGAGTACATCGATGGTGTTGAAGACATTCTTTACAGTTTGAAGCAAAATAACTATGAAGTGCATGCATTTACAAATTATCCAGTGTGGTACCAGTTAGTTGAGGAGAAGTTAAAGCTCTCAAAGTATTTGTCCTGGACATTCTGTTCATGCACAGTTGGTAAGCGCAAACCTTCGCCTGATTTTTATCTACATGCTGTGGACCACCTAAACGTTGATCCAGCAAGCTGCATATTCATTGATGACAGGATGACAAACATTGAAGCAGCCCTTAGTGTAGGAATGGTTGGTTTGCAATTTAAAAATGCTGAGGTGCTCAAGAAGGATTTATGCTCGCTTGGAGTTGAATTTGCACCTGTGCATGAAGGTGAAATACAAGTCCAATAAGGTTGCACTTTGTTAACTCTTCTGCTCATGTGTATAAAATTCATATATGGGACCCTTCTGTCTTCTGAACCTTGTCAATAACATGAAGACCCAGAGTGATTGAGAGAGAGAGAGAGTGAGAGGGAGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10231#0 CCGCACCATCTCTCCAGTCTCCATCCTTGATGGTCTCCTTGCTCCCCCGCGCGCCCTGCC 60
consensus_10231#1 ------------------------------------------------------------
consensus_10231#0 TCGCCTCCTCCATCCCCAAGCCCACCGCCCTTCGGCCGCCGTGCATGGCGTCCACATCCG 120
consensus_10231#1 ------------------------------------------------------------
consensus_10231#0 CCGCGGCCCCTGCCGCTGCAGCGGCGACGGCGGAGGCGTCCGCGTCCCGGCCGCCGAGGA 180
consensus_10231#1 ------------------------------------------------------------
consensus_10231#0 AGCTGCCGGTGCTGCTGTTCGACGTCATGGACACCGTCGTCCGCGACCCCTTCTACCACC 240
consensus_10231#1 ---------TGCTGCTGTTCGACGTCATGGACACCGTCGTCCGCGACCCCTTCTACCACC 51
***************************************************
consensus_10231#0 ACATACCGGCCTTCTTCCAAATGTCAATGAAGGAACTCCTCGAAAACAAGCATCCAACAG 300
consensus_10231#1 ACATACCGGCCTTCTTCCAAATGTCAATGAAGGAACTCCTCGAAAACAAGCATCCAACAG 111
************************************************************
consensus_10231#0 CATGGTCTGAATTTGAGATGGGTCTAATTGATGAGAATGAACTGGCCAAAAAGTTCTTCA 360
consensus_10231#1 CATGGTCTGAATTTGAGATGGGTCTAATTGATGAGAATGAACTGGCCAAAAAGTTCTTCA 171
************************************************************
consensus_10231#0 ATGATGGCAGGTCTTTTGATTTGGAAGGTTTGAAAGCATGCATGGTGAGGGCATATGAGT 420
consensus_10231#1 ATGATGGCAGGTCTTTTGATTTGGAAGGTTTGAAAGCATGCATGGTGAGGGCATATGAGT 231
************************************************************
consensus_10231#0 ACATCGATGGTGTTGAAGACATTCTTTACAGTTTGAAGCAAAATAACTATGAAGTGCATG 480
consensus_10231#1 ACATCGATGGTGTTGAAGACATTCTTTACAGTTTGAAGCAAAATAACTATGAAGTGCATG 291
************************************************************
consensus_10231#0 CATTTACAAATTATCCAGTGTGGTACCAGTTAGTTGAGGAGAAGTTAAAGCTCTCAAAGT 540
consensus_10231#1 CATTTACAAATTATCCAGTGTGGTACCAGTTAGTTGAGGAGAAGTTAAAGCTCTCAAAGT 351
************************************************************
consensus_10231#0 ATTTGTCCTGGACATTCTGTTCATGCACAGTTGGTAAGCGCAAACCTTCGCCTGATTTTT 600
consensus_10231#1 ATTTGTCCTGGACATTCTGTTCATGCACAGTTGGTAAGCGCAAACCTTCGCCTGATTTTT 411
************************************************************
consensus_10231#0 ATCTACATGCTGTGGACCACCTAAACGTTGATCCAGCAAGCTGCATATTCATTGATGACA 660
consensus_10231#1 ATCTACATGCTGTGGACCACCTAAACGTTGATCCAGCAAGCTGCATATTCATTGATGACA 471
************************************************************
consensus_10231#0 GGATGACAAACATTGAAGCAGCCCTTAGTGTAGGAATGGTTGGTTTGCAATTTAAAAATG 720
consensus_10231#1 GGATGACAAACATTGAAGCAGCCCTTAGTGTAGGAATGGTTGGTTTGCAATTTAAAAATG 531
************************************************************
consensus_10231#0 CTGAGGTGCTCAAGAAGGATTTATGCTCGCTTGGAGTTGAATTTGCACCTGTGCATGAAG 780
consensus_10231#1 CTGAGGTGCTCAAGAAGGATTTATGCTCGCTTGGAGTTGAATTTGCACCTGTGCATGAAG 591
************************************************************
consensus_10231#0 GTGAAATACAAGTCCAATAAGGTTGCACTTTGTTAACTCTTCTGCTCATGTGTATAAAAT 840
consensus_10231#1 GTGAAATACAAGTCCAATAAGGTTGCACTTTGTTAACTCTTCTGCTCATGTGTATAAAAT 651
************************************************************
consensus_10231#0 TCATATATCTGACCCTTCTGTCTTCTGAACCTTGTCAATAACATGAAGACCCCTGATTGT 900
consensus_10231#1 TCATATATGGGACCCTTCTGTCTTCTGAACCTTGTCAATAACATGAAGACCCAGAGTGAT 711
******** ****************************************** * *
consensus_10231#0 TGCAGATATAAACTACTAATATATTTTGTTTATTCAAGTGTGCGAATTCTCAAAGCATTC 960
consensus_10231#1 TGAGAGAGAGAGAGAGTGAGAGGGAGAGA------------------------------- 740
** * * * * * *
consensus_10231#0 ATTAGCTTCCATGTTTCCAACAAGTAAAGGTGAACAAAATACCAATGGCTTGGAATACAT 1020
consensus_10231#1 ------------------------------------------------------------
consensus_10231#0 GCCAGTGCTTAATCAATAGAACTTTACCACAATCTCTGTTCAGGATAAAGATAAATCATC 1080
consensus_10231#1 ------------------------------------------------------------
consensus_10231#0 TTGAACTAACTTTAGGTTAAATTATTTATCTATCTAATACTAGACTAATCCAGACAAACT 1140
consensus_10231#1 ------------------------------------------------------------
consensus_10231#0 TGTGCTTGGATCAGGTGTAGCTCATGCACACGTTGTTAGCGCTTAAAAAATGGAAACATG 1200
consensus_10231#1 ------------------------------------------------------------
consensus_10231#0 GTTAGCGCTTAAAAAATCCAGAGTTAATTAAATGAGCCCCAGATTCAAGCATAGTAATTT 1260
consensus_10231#1 ------------------------------------------------------------
consensus_10231#0 GCTTAAAGCTAGGTAAAGAACAGCCTGAGCTAGCTGGCTTGAGCCAAAAAAGGATAGTTT 1320
consensus_10231#1 ------------------------------------------------------------
consensus_10231#0 TGAGGAACAAGAACAAACAGGCTCAATCATGTGTTAACTGTTAACTCAAAGCTTGATCAA 1380
consensus_10231#1 ------------------------------------------------------------
consensus_10231#0 TAATCCATCAACTCAAAGCTGTGACTGCATTTTATTGGTTCAATAATCAAGATCCTAAGT 1440
consensus_10231#1 ------------------------------------------------------------
consensus_10231#0 AACTATGTTTTGTCAGAGTGATCGCCAATTAATATTCAAGGTCTTGCATTAAATTATAAT 1500
consensus_10231#1 ------------------------------------------------------------
consensus_10231#0 GGATGATCATATGTATCTGTTATGCTTTCATAATTAAGAGTATCTCTGAAACTCCATGTT 1560
consensus_10231#1 ------------------------------------------------------------
consensus_10231#0 CCTCTCAAAAAAAAAAAA 1578
consensus_10231#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||