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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10235#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2011 fasta sequence
[CAAAACAGAGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGAGGAGGAGGAGGAGCACGCGTTCTTCGCCTCGCCTCTCTCGCCTCACGGGAGGAGAGGAGGAGGGCGATTCGGAGGAGGGCGGTTGCCTTTGATCCCATTCCCCTCCCCCATCTTCTCCCCCGGGTTCGGATTCGGTCGGTCGGTTGGTTGATCCGCAACCGATCGATCGAGGGGGGGTGGCACTCGCGGATCCTCTCGTGTTCTTCCTCCAGTGCGCTGATCTGGACACGGCGCGATTTATAGTCTATCGGCCAGATCACAAAGTTTTTCCTCGCCGTACATTCAAAAGCTTTCTCTGAAGACTTTCTACATTCTGAAGATTATATTGGGAATAACATTTTAACATGAAGGCCGATCGGTTAATGTTGTCCAATCTCGACCATGATTTGGGATACCTACACAAGTTTCCCTCAGATTTTCCAATGTCTCATGATCTTGGGTTGAGCTTGTTTACGCATGCCGGTACAATGGTGGGAAGTTCTTTGCGACAGCACAGGCAGATCTGTTCTTCAGGAAATTTGATTGTTCAGGAAGCATTTGATCGCCTCAACAAGTTTGCCAGAGCTTTCTGCTACTGGCTTTCTAGAGTGTCTAATCCCAAGAATTTACGTAGGCTAATGAGTATGGAAGGCCCTAGCTCTGGAGCTTGCCAGTCACATATCAATCATTTGAGCTCCCGTATGCAAAATTTGGCTGTATTGCAGTTTGGTTATCTAGTAAGAGAAGAGCATGCTGTACAACTGCTTTTAGCTAACTTCGCAAGCACAACACTTGGGCGACTCTGGAATGATTTTCAGCAGCAACATGCCTGCAATGTTCTTACTCTGGCTGGTGCCATGGCTATTGTACCCCCTCTTGAAAATATATCACTGAAGACGCTCGCAGAGTCAATGGCACTGGGAAATATCAAGGACTATGTCAGCAGACCTATGGATAAGCCTTATCTGGAGGACAAATGCATAAAAAGTAGATCTGTTGCAGTGCCAAGCACAATATTTCAGGGAGATGCAATTGAACCAAAAACTGGAATCAAGTTTCCTGCATTTCTCGAAGATGACTCCAGTCCATCTACAACGGTCCTTGTTGGGATGGGTTTCAAAGGTGTGAAAGTAATGAGGGTCAAAAATTTGGATCTGTACGCTTTTGGTTTATATCTGCAACCGAATACTATTTCTGAGAAGCTGGGACCTAAGTATGCTTCTGTTCCAACCATCAACTTGAAGGACAACCCAGATTTCTATGATGATCTTTTGAGGGAAAACCTTCCTATGAGAGTTAGATTGGTACTTCACTACAACGGCCTTAGCATTGGTGCAGTGCGAGATGTATTTGAGAAGTCACTTGGCCTGCGCCTCCAGAAGATGAATCCCAACACTGATTATCATTGCTTGAAAACTTTTGGTTCTTACTTCAATGAAGACATTCCTATTCCTGCGGGTACAAAGATCGACTTCTGCCAAACTTCTGATGGCCAGCTAATAACAGAAATTGATGGCAGACAAATTGGTGCTGTTAAGAGCAAAGACCTCTGCAGGGCTCTGTTCGGTATGTACATTGGCGATTCACCGGTCTCATTGCAGGCCAAAAAAGATATTGCCCAAAACGTAGCCGGGCTCATAGGTAAATGCTGAAGAAACTGGAAACCAAACGCAGCTAGTCGGCCAATTATT--ATTCTTCTATACAGTAAGAAGAGGAAGCACACATTGAAGAGATTAGGCGAGGATCATAGTATGTATATACATCGAGAGATCTGTAACTTGTAAAGTGAAAAAAGAAAAAGCAAAATCGTAATGTACATATGGAAGATTAGCATCTGTTTACGGCGCAAGGGCACCCATTCCTTTTTCTATGTGGATGGATGGACCCTCTGCCATTTCATACACAGGAGTGACAGGTTGTATAGTACATGAGAAATTCAGATGCCTCTTCCATGAGTATAATACAAGTTCTCAAATCTTTTTTGCCC]
[+] EMBL AK121461 [CAAAACAGAGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGAGGAGGAGGAGGAGCACGCGTTCTTCGCCTCGCCTCTCTCGCCTCACGGGAGGAGAGGAGGAGGGCGATTCGGAGGAGGGCGGTTGCCTTTGATCCCATTCCCCTCCCCCATCTTCTCCCCCGGGTTCGGATTCGGTCGGTCGGTTGGTTGATCCGCAACCGATCGATCGAGGGGGGGTGGCACTCGCGGATCCTCTCGTGTTCTTCCTCCAGTGCGCTGATCTGGACACGGCGCGATTTATAGTCTATCGGCCAGATCACAAAGTTTTTCCTCGCCGTACATTCAAAAGCTTTCTCTGAAGACTTTCTACATTCTGAAGATTATATTGGGAATAACATTTTAACATGAAGGCCGATCGGTTAATGTTGTCCAATCTCGACCATGATTTGGGATACCTACACAAGTTTCCCTCAGATTTTCCAATGTCTCATGATCTTGGGTTGAGCTTGTTTACGCATGCCGGTACAATGGTGGGAAGTTCTTTGCGACAGCACAGGCAGATCTGTTCTTCAGGAAATTTGATTGTTCAGGAAGCATTTGATCGCCTCAACAAGTTTGCCAGAGCTTTCTGCTACTGGCTTTCTAGAGTGTCTAATCCCAAGAATTTACGTAGGCTAATGAGTATGGAAGGCCCTAGCTCTGGAGCTTGCCAGTCACATATCAATCATTTGAGCTCCCGTATGCAAAATTTGGCTGTATTGCAGTTTGGTTATCTAGTAAGAGAAGAGCATGCTGTACAACTGCTTTTAGCTAACTTCGCAAGCACAACACTTGGGCGACTCTGGAATGATTTTCAGCAGCAACATGCCTGCAATGTTCTTACTCTGGCTGGTGCCATGGCTATTGTACCCCCTCTTGAAAATATATCACTGAAGACGCTCGCAGAGTCAATGGCACTGGGAAATATCAAGGACTATGTCAGCAGACCTATGGATAAGCCTTATCTGGAGGACAAATGCATAAAAAGTAGATCTGTTGCAGTGCCAAGCACAATATTTCAGGGAGATGCAATTGAACCAAAAACTGGAATCAAGTTTCCTGCATTTCTCGAAGATGACTCCAGTCCATCTACAACGGTCCTTGTTGGGATGGGTTTCAAAGGTGTGAAAGTAATGAGGGTCAAAAATTTGGATCTGTACGCTTTTGGTTTATATCTGCAACCGAATACTATTTCTGAGAAGCTGGGACCTAAGTATGCTTCTGTTCCAACCATCAACTTGAAGGACAACCCAGATTTCTATGATGATCTTTTGAGGGAAAACCTTCCTATGAGAGTTAGATTGGTACTTCACTACAACGGCCTTAGCATTGGTGCAGTGCGAGATGTATTTGAGAAGTCACTTGGCCTGCGCCTCCAGAAGATGAATCCCAACACTGATTATCATTGCTTGAAAACTTTTGGTTCTTACTTCAATGAAGACATTCCTATTCCTGCGGGTACAAAGATCGACTTCTGCCAAACTTCTGATGGCCAGCTAATAACAGAAATTGATGGCAGACAAATTGGTGCTGTTAAGAGCAAAGACCTCTGCAGGGCTCTGTTCGGTATGTACATTGGCGATTCACCGGTCTCATTGCAGGCCAAAAAAGATATTGCCCAAAACGTAGCCGGGCTCATAGGTAAATGCTGAAGAAACTGGAAACCAAACGCAGCTAGTCGGCCAATTATT ATTCTTCTATACAGTAAGAAGAGGAAGCACACATTGAAGAGATTAGGCGAGGATCATAGTATGTATATACATCGAGAGATCTGTAACTTGTAAAGTGAAAAAAGAAAAAGCAAAATCGTAATGTACATATGGAAGATTAGCATCTGTTTACGGCGCAAGGGCACCCATTCCTTTTTCTATGTGGATGGATGGACCCTCTGCCATTTCATACACAGGAGTGACAGGTTGTATAGTACATGAGAAATTCAGATGCCTCTTCCATGAGTATAATACAAGTTCTCAAAT ]
[+] EMBL CF304921 [ TTTGCGACAGCACAGGCAGATCTGTTCTTCAGGAAATTTGATTGTTCAGGAAGCATTTGATCGCCTCAACAAGTTTGCCAGAGCTTTCTGCTACTGGCTTTCTAGAGTGTCTAATCCCAAGAATTTACGTAGGCTAATGAGTATGGAAGGCCCTAGCTCTGGAGCTTGCCAGTCACATATCAATCATTTGAGCTCCCGTATGCAAAATTTGGCTGTATTGCAGTTTGGTTATCTAGTAAGAGAAGAGCATGCTGTACAACTGCTTTTAGCTAACTTCGCAAGCACAACACTTGGGCGACTCTGGAATGATTTTCAGCAGCAACATGCCTGCAATGTTCTTACTCTGGCTGGTGCCATGGCTATTGTACCCCCTCTTGAAAATATATCACTGAAGACGCTCGCAGAGTCAATGGCACTGGGAAATATCAAGGACTATGTCAGCAGACCTATGGATAAGCCTTATCTGGAGGACAAAT ]
[+] EMBL CF589250 [ AAGAATTTACGTAGGCTAATGAGTATGGAAGGCCCTAGCTCTGGAGCTTGCCAGTCACATATCAATCATTTGAGCTCCCGTATGCAAAATTTGGCTGTATTGCAGTTTGGTTATCTAGTAAGAGAAGAGCATGCTGTACAACTGCTTTTAGCTAACTTCGCAAGCACAACACTTGGGCGACTCTGGAATGATTTTCAGCAGCAACATGCCTGCAATGTTCTTACTCTGGCTGGTGCCATGGCTAT ]
[+] EMBL BF889469 [ TCGACTTCTGCCAAACTTCTGATGGCCAGCTAATAACAGAAATTGATGGCAGACAAATTGGTGCTGTTAAGAGCAAAGACCTCTGCAGGGCTCTGTT ]
[+] EMBL AU165612 [ AAAAGATATTGCCCAAAACGTAGCCGGGCTCATAGGTAAATGCTGAAGAAACTGGAAACCAAACGCAGCTAGTCGGCCAATTATTTCATTCTTCTATACAGTAAGAAGAGGAAGCACACATTGAAGAGATTAGGCGAGGNTCATAGTATGTATATACATCGAGAGATCTGTAACTTGTAAAGTGAAAAAAGAAAAAGCAAAATCGTAATGTACATATGGAAGATTAGCATCTGTTTACGGCGCAAGGGCACCCATTCCTTTTTCTATGTGGATGGATGGACCCTCTGCCATTTCATACACAGGAGTGACAGGTTGTATAGTACATGAGGAATTCAGATGCCTCTTCCATGAGTATAATACAAGTNCTCAAATCTTTTTTGCCC]
[+] EMBL AU165767 [ AACTTGTAAAGTGAAAAAAGAAAAAGCAAAATCGTAATGTACATATGGAAGATTAGCATCTGTTTACGGCGCAAGGGCACCCATTCCTTTTTCTATGTGGATGGATGGACCCTCTGCCATTTCATACACAGGAGTGACAGGTTGTATAGTACATGAGAAATTCAGATGCCTCTTCCATGAGTATAATACAAGTTCTCAAAaa ]
consensusID : consensus_10235#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence
[ATTGGTACTTCACTACAACGGCCTTAGCATTGGTGCAGTGCGAGATGTATTTGAGAAGTCACTTGGCCTGCGCCTCCAGAAGATGAATCCCAACACTGATTATCATTGCTTGAAAACTTTTGGTTCTTACTTCAATGAAGACATTCCTATTCCTGCGGGTACAAAGATCGACTTTTGCCAAACTTTTGATGGCCAGCTAATAACAGAAATTGATGGCAGACAAATTGGTGCTGTTAAGAGCAAAGACCTTTGCAGGGCTCTGTTCGGTATGTACATTGGCGATTCACCGGTCTCATTGCAGGCCAAAAAAAGATATTGCCCAAAACGTAGCCGGGCTCATAGGTAAATGCTGAAGAAACTGGAAACCGAACGCAGCTAGTCGGCCAATTATTTCATTTTTCTATCCAGTAAGAAGAGGAAGCCCCCATTGAAGAGATTAGGCGAGGATCATAGTATGTATATACATCGAGAGATCTGTAACTTGTAAAGTGAAAAAAGAAAAAGCAAAATCGTAATGTACATATGGAAGATTAGCATCTGTTTACGGCGCAAGGGCACCCATTCCTTTTCCTATGTGGATGGATGGACCCTTTGCCATTTCATACACAGGAGTGACAGGTTGTATAGTACATGAGAAATTCAGATGCCTCTTCCATGAGTATAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA762154 [ATTGGTACTTCACTACAACGGCCTTAGCATTGGTGCAGTGCGAGATGTATTTGAGAAGTCACTTGGCCTGCGCCTCCAGAAGATGAATCCCAACACTGATTATCATTGCTTGAAAACTTTTGGTTCTTACTTCAATGAAGACATTCCTATTCCTGCGGGTACAAAGATCGACTTTTGCCAAACTTTTGATGGCCAGCTAATAACAGAAATTGATGGCAGACAAATTGGTGCTGTTAAGAGCAAAGACCTTTGCAGGGCTCTGTTCGGTATGTACATTGGCGATTCACCGGTCTCATTGCAGGCCAAAAAAAGATATTGCCCAAAACGTAGCCGGGCTCATAGGTAAATGCTGAAGAAACTGGAAACCGAACGCAGCTAGTCGGCCAATTATTTCATTTTTCTATCCAGTAAGAAGAGGAAGCCCCCATTGAAGAGATTAGGCGAGGATCATAGTATGTATATACATCGAGAGATCTGTAACTTGTAAAGTGAAAAAAGAAAAAGCAAAATCGTAATGTACATATGGAAGATTAGCATCTGTTTACGGCGCAAGGGCACCCATTCCTTTTCCTATGTGGATGGATGGACCCTTTGCCATTTCATACACAGGAGTGACAGGTTGTATAGTACATGAGAAATTCAGATGCCTCTTCCATGAGTATAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10235#0 CAAAACAGAGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGAGGAGGAGGAGGAGCA 60
consensus_10235#1 ------------------------------------------------------------
consensus_10235#0 CGCGTTCTTCGCCTCGCCTCTCTCGCCTCACGGGAGGAGAGGAGGAGGGCGATTCGGAGG 120
consensus_10235#1 ------------------------------------------------------------
consensus_10235#0 AGGGCGGTTGCCTTTGATCCCATTCCCCTCCCCCATCTTCTCCCCCGGGTTCGGATTCGG 180
consensus_10235#1 ------------------------------------------------------------
consensus_10235#0 TCGGTCGGTTGGTTGATCCGCAACCGATCGATCGAGGGGGGGTGGCACTCGCGGATCCTC 240
consensus_10235#1 ------------------------------------------------------------
consensus_10235#0 TCGTGTTCTTCCTCCAGTGCGCTGATCTGGACACGGCGCGATTTATAGTCTATCGGCCAG 300
consensus_10235#1 ------------------------------------------------------------
consensus_10235#0 ATCACAAAGTTTTTCCTCGCCGTACATTCAAAAGCTTTCTCTGAAGACTTTCTACATTCT 360
consensus_10235#1 ------------------------------------------------------------
consensus_10235#0 GAAGATTATATTGGGAATAACATTTTAACATGAAGGCCGATCGGTTAATGTTGTCCAATC 420
consensus_10235#1 ------------------------------------------------------------
consensus_10235#0 TCGACCATGATTTGGGATACCTACACAAGTTTCCCTCAGATTTTCCAATGTCTCATGATC 480
consensus_10235#1 ------------------------------------------------------------
consensus_10235#0 TTGGGTTGAGCTTGTTTACGCATGCCGGTACAATGGTGGGAAGTTCTTTGCGACAGCACA 540
consensus_10235#1 ------------------------------------------------------------
consensus_10235#0 GGCAGATCTGTTCTTCAGGAAATTTGATTGTTCAGGAAGCATTTGATCGCCTCAACAAGT 600
consensus_10235#1 ------------------------------------------------------------
consensus_10235#0 TTGCCAGAGCTTTCTGCTACTGGCTTTCTAGAGTGTCTAATCCCAAGAATTTACGTAGGC 660
consensus_10235#1 ------------------------------------------------------------
consensus_10235#0 TAATGAGTATGGAAGGCCCTAGCTCTGGAGCTTGCCAGTCACATATCAATCATTTGAGCT 720
consensus_10235#1 ------------------------------------------------------------
consensus_10235#0 CCCGTATGCAAAATTTGGCTGTATTGCAGTTTGGTTATCTAGTAAGAGAAGAGCATGCTG 780
consensus_10235#1 ------------------------------------------------------------
consensus_10235#0 TACAACTGCTTTTAGCTAACTTCGCAAGCACAACACTTGGGCGACTCTGGAATGATTTTC 840
consensus_10235#1 ------------------------------------------------------------
consensus_10235#0 AGCAGCAACATGCCTGCAATGTTCTTACTCTGGCTGGTGCCATGGCTATTGTACCCCCTC 900
consensus_10235#1 ------------------------------------------------------------
consensus_10235#0 TTGAAAATATATCACTGAAGACGCTCGCAGAGTCAATGGCACTGGGAAATATCAAGGACT 960
consensus_10235#1 ------------------------------------------------------------
consensus_10235#0 ATGTCAGCAGACCTATGGATAAGCCTTATCTGGAGGACAAATGCATAAAAAGTAGATCTG 1020
consensus_10235#1 ------------------------------------------------------------
consensus_10235#0 TTGCAGTGCCAAGCACAATATTTCAGGGAGATGCAATTGAACCAAAAACTGGAATCAAGT 1080
consensus_10235#1 ------------------------------------------------------------
consensus_10235#0 TTCCTGCATTTCTCGAAGATGACTCCAGTCCATCTACAACGGTCCTTGTTGGGATGGGTT 1140
consensus_10235#1 ------------------------------------------------------------
consensus_10235#0 TCAAAGGTGTGAAAGTAATGAGGGTCAAAAATTTGGATCTGTACGCTTTTGGTTTATATC 1200
consensus_10235#1 ------------------------------------------------------------
consensus_10235#0 TGCAACCGAATACTATTTCTGAGAAGCTGGGACCTAAGTATGCTTCTGTTCCAACCATCA 1260
consensus_10235#1 ------------------------------------------------------------
consensus_10235#0 ACTTGAAGGACAACCCAGATTTCTATGATGATCTTTTGAGGGAAAACCTTCCTATGAGAG 1320
consensus_10235#1 ------------------------------------------------------------
consensus_10235#0 TTAGATTGGTACTTCACTACAACGGCCTTAGCATTGGTGCAGTGCGAGATGTATTTGAGA 1380
consensus_10235#1 ----ATTGGTACTTCACTACAACGGCCTTAGCATTGGTGCAGTGCGAGATGTATTTGAGA 56
********************************************************
consensus_10235#0 AGTCACTTGGCCTGCGCCTCCAGAAGATGAATCCCAACACTGATTATCATTGCTTGAAAA 1440
consensus_10235#1 AGTCACTTGGCCTGCGCCTCCAGAAGATGAATCCCAACACTGATTATCATTGCTTGAAAA 116
************************************************************
consensus_10235#0 CTTTTGGTTCTTACTTCAATGAAGACATTCCTATTCCTGCGGGTACAAAGATCGACTTCT 1500
consensus_10235#1 CTTTTGGTTCTTACTTCAATGAAGACATTCCTATTCCTGCGGGTACAAAGATCGACTTTT 176
********************************************************** *
consensus_10235#0 GCCAAACTTCTGATGGCCAGCTAATAACAGAAATTGATGGCAGACAAATTGGTGCTGTTA 1560
consensus_10235#1 GCCAAACTTTTGATGGCCAGCTAATAACAGAAATTGATGGCAGACAAATTGGTGCTGTTA 236
********* **************************************************
consensus_10235#0 AGAGCAAAGACCTCTGCAGGGCTCTGTTCGGTATGTACATTGGCGATTCACCGGTCTCAT 1620
consensus_10235#1 AGAGCAAAGACCTTTGCAGGGCTCTGTTCGGTATGTACATTGGCGATTCACCGGTCTCAT 296
************* **********************************************
consensus_10235#0 TGCAGGCCAAAAAA-GATATTGCCCAAAACGTAGCCGGGCTCATAGGTAAATGCTGAAGA 1679
consensus_10235#1 TGCAGGCCAAAAAAAGATATTGCCCAAAACGTAGCCGGGCTCATAGGTAAATGCTGAAGA 356
************** *********************************************
consensus_10235#0 AACTGGAAACCAAACGCAGCTAGTCGGCCAATTATT--ATTCTTCTATACAGTAAGAAGA 1737
consensus_10235#1 AACTGGAAACCGAACGCAGCTAGTCGGCCAATTATTTCATTTTTCTATCCAGTAAGAAGA 416
*********** ************************ *** ****** ***********
consensus_10235#0 GGAAGCACACATTGAAGAGATTAGGCGAGGATCATAGTATGTATATACATCGAGAGATCT 1797
consensus_10235#1 GGAAGCCCCCATTGAAGAGATTAGGCGAGGATCATAGTATGTATATACATCGAGAGATCT 476
****** * ***************************************************
consensus_10235#0 GTAACTTGTAAAGTGAAAAAAGAAAAAGCAAAATCGTAATGTACATATGGAAGATTAGCA 1857
consensus_10235#1 GTAACTTGTAAAGTGAAAAAAGAAAAAGCAAAATCGTAATGTACATATGGAAGATTAGCA 536
************************************************************
consensus_10235#0 TCTGTTTACGGCGCAAGGGCACCCATTCCTTTTTCTATGTGGATGGATGGACCCTCTGCC 1917
consensus_10235#1 TCTGTTTACGGCGCAAGGGCACCCATTCCTTTTCCTATGTGGATGGATGGACCCTTTGCC 596
********************************* ********************* ****
consensus_10235#0 ATTTCATACACAGGAGTGACAGGTTGTATAGTACATGAGAAATTCAGATGCCTCTTCCAT 1977
consensus_10235#1 ATTTCATACACAGGAGTGACAGGTTGTATAGTACATGAGAAATTCAGATGCCTCTTCCAT 656
************************************************************
consensus_10235#0 GAGTATAATACAAGTTCTCAAATCTTTTTTGCCC 2011
consensus_10235#1 GAGTATAAAAAAAAAAAAAAAAAAAAAA------ 684
******** * ** ***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||