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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10242#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1961 fasta sequence
[AGAAACAGAGAGATCTCCCGTCTCGTCGTCTCCTCCGCTCCTTCCGCCTCCCCAACACGAGTCGCGCCGCCGATCTCAGCAGGGGAGGGGAGGGGAGGGGATCCTGGTGAGCAAATATGGATGGACTGGTAGAGAATTTTGACGCAGATGATCTCGGCGAAATGCCTCAGAATCATTATAATGAAGAACAACTGATCCCCTACAGCGATGTGTCACATCCTTACAACGAAGAACCCGATAACATGGACAACGTAGAAGAGGGGAACCCATACATTCAGCAAGTGAGTTTGTACAGTGAAGAACCAGAGAATCAGTACAATGAGGAGCCATCAAACCCTTATCAGGAAGAGTCGGATAATGCATACAATGGGGAAGTGAAGCAACAGGATAGCTTGCCGGTAGAGGCTGATAAGAAATGGCCTGGTTGGCCAGGAGAGAGTGTTTTTCGTATACTGATCCCAGCCCAGAAGGTAGGTGCTATCATTGGCCGCAAAGGGGAGTTTATCAAAAAGATGTGTGAGGAGTCTAAAGCTCGCATAAAAATACTTGATGGCCCGCCTGGTGTACCAGAAAGAACAGTAATGATTTCAGCAAAGGATGAGCCAGATGCACCTATATCTCCAGCTATGGACGGGTTATTTAGAGTCTATAAACGAATAACTGATGGTTCAGATGGTGATTCTGGTCAACCTGAAAGAAATATTAGTAATGTAGGACCAACACGACTGCTAGTACCAGCTTCCCAAGCTGGCAGCCTTATTGGGAAACAGGGAGCAACCATTAAATCCATTCAAGATTCTTCAAAGTCCATTGTTCGTATTGTTGAGACTTTGCCTCTTGTTGCACTAAATGATGATAGAGTTGTGGAGATACAAGGTGAGCCTGTTGGTGTCCAGAAAGCACTGGAATCGATAGCCAGTCACTTAAGAAAATTTCTTGTTGACCGCAGTGTTCTTCCTCTTTTTGAAGGGCAAATGAAAATGCACAATGCACAGAGGGAACAAGCAATGGCAGCTCCTCAGCCTTGGGGCCCACCTCAACCTTGGGGCCCTCCTCCAAGCCACCTCCCTCCTGGTGGTCCAGGTTATGGTGGACATCCACAGTTCATGCCCCCAAGGCCGCAAGACAATTATTATCCTCCCCCTGATGTCCCCTCTATGGAAAAGCAGCCACACTACGGTATTTCTGCCTATGGACGAGAAGCACCAACTGGTGTTTCTGCTTCTGGGAATCAACCACCATCACATGTGGCTTCTCAGGTTACACACAACATGCAAATTCCTCTCTCCTATGCTGATGCTGTGATTGGAGCAGCTGGTGCTAGTATTAGCTATATTCGTAGGCACAGTGGTGCAACAGTAAC-TATTCAGGAAAG-CAGAGG-TGCACCTGGGGAGATGACAGTTGAGATAATTGGTAGTGCATCCCAAGTCCAAACTGCCCAGCAACTAGTCCAGAATTTCATGGCAGAAGCTCCTCAGGGCCCTCCTCCGCCAGCTTCTAACCCTCCGGCTCCAGCAGTTGATCTGAGCTACGGTTCATACCCACCACCATATGGCGCATCCTACGGATCGGCTGCTTCAGGAGCAGGGCCTGCACCTCACAATGGAGGCAGCTACGGTGGCACCACCTACCCAAGCTATGGATACTAAGTATCAGCAACGCTCAGCTTAGCTTT-GTGTCGGTTGATGAACAGTAGTACATTTTTGCTGCCGAATAATGACAATCCTGGATTCCTCAGCTGCGACTACCTTAAGCTCTTAGTTTACTTTTTCTACTCTTTTTGCCGTGTGTATGCCCAACCAGTTTACTTTTGGAATATGTTTATTCTCGTGGTCTGGATTAGTTATATAGTAATCCGATGCTGCCCTTTGTCGTCGGAAACAAGTGGTTGACTGTCTTTAAACTCGATTTTGGGGTGGAAAGTGCTGNNNTTTNCCAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK067707 [AGAAACAGAGAGATCTCCCGTCTCGTCGTCTCCTCCGCTCCTTCCGCCTCCCCAACACGAGTCGCGCCGCCGATCTCAGCAGGGGAGGGGAGGGGAGGGGATCCTGGTGAGCAAATATGGATGGACTGGTAGAGAATTTTGACGCAGATGATCTCGGCGAAATGCCTCAGAATCATTATAATGAAGAACAACTGATCCCCTACAGCGATGTGTCACATCCTTACAACGAAGAACCCGATAACATGGACAACGTAGAAGAGGGGAACCCATACATTCAGCAAGTGAGTTTGTACAGTGAAGAACCAGAGAATCAGTACAATGAGGAGCCATCAAACCCTTATCAGGAAGAGTCGGATAATGCATACAATGGGGAAGTGAAGCAACAGGATAGCTTGCCGGTAGAGGCTGATAAGAAATGGCCTGGTTGGCCAGGAGAGAGTGTTTTTCGTATACTGATCCCAGCCCAGAAGGTAGGTGCTATCATTGGCCGCAAAGGGGAGTTTATCAAAAAGATGTGTGAGGAGTCTAAAGCTCGCATAAAAATACTTGATGGCCCGCCTGGTGTACCAGAAAGAACAGTAATGATTTCAGCAAAGGATGAGCCAGATGCACCTATATCTCCAGCTATGGACGGGTTATTTAGAGTCTATAAACGAATAACTGATGGTTCAGATGGTGATTCTGGTCAACCTGAAAGAAATATTAGTAATGTAGGACCAACACGACTGCTAGTACCAGCTTCCCAAGCTGGCAGCCTTATTGGGAAACAGGGAGCAACCATTAAATCCATTCAAGATTCTTCAAAGTCCATTGTTCGTATTGTTGAGACTTTGCCTCTTGTTGCACTAAATGATGATAGAGTTGTGGAGATACAAGGTGAGCCTGTTGGTGTCCAGAAAGCACTGGAATCGATAGCCAGTCACTTAAGAAAATTTCTTGTTGACCGCAGTGTTCTTCCTCTTTTTGAAGGGCAAATGAAAATGCACAATGCACAGAGGGAACAAGCAATGGCAGCTCCTCAGCCTTGGGGCCCACCTCAACCTTGGGGCCCTCCTCCAAGCCACCTCCCTCCTGGTGGTCCAGGTTATGGTGGACATCCACAGTTCATGCCCCCAAGGCCGCAAGACAATTATTATCCTCCCCCTGATGTCCCCTCTATGGAAAAGCAGCCACACTACGGTATTTCTGCCTATGGACGAGAAGCACCAACTGGTGTTTCTGCTTCTGGGAATCAACCACCATCACATGTGGCTTCTCAGGTTACACACAACATGCAAATTCCTCTCTCCTATGCTGATGCTGTGATTGGAGCAGCTGGTGCTAGTATTAGCTATATTCGTAGGCACAGTGGTGCAACAGTAAC TATTCAGGAAAG CAGAGG TGCACCTGGGGAGATGACAGTTGAGATAATTGGTAGTGCATCCCAAGTCCAAACTGCCCAGCAACTAGTCCAGAATTTCATGGCAGAAGCTCCTCAGGGCCCTCCTCCGCCAGCTTCTAACCCTCCGGCTCCAGCAGTTGATCTGAGCTACGGTTCATACCCACCACCATATGGCGCATCCTACGGATCGGCTGCTTCAGGAGCAGGGCCTGCACCTCACAATGGAGGCAGCTACGGTGGCACCACCTACCCAAGCTATGGATACTAAGTATCAGCAACGCTCAGCTTAGCTTT GTGTCGGTTGATGAACAGTAGTACATTTTTGCTGCCGAATAATGACAATCCTGGATTCCTCAGCTGCGACTACCTTAAGCTCTTAGTTTACTTTTTCTACTCTTTTTGCCGTGTGTATGCCCAACCAGTTTACTTTTGGAATATGTTTATTCTCGTGATCTGGATTAGTTATATAGTAATCCGATGCTGCCCTTTGTCGTCGGAAACAAGTGGTTGACTGTCTTTAAACTCGATTTTGGGGTGGAAAGTGCT ]
[+] EMBL AA753812 [ ACAGTTCATGCCCCCAAGGCCGCAAGACAATTATTATCCTCCCCCTGATGTCCCCTCTATGGAAAAGCAGCCACACTACGGTATTTCTGCCTATGGACGAGAAGCACCAACTGGTGTTTCTGCTTCTGGGAATCAACCACCATCACATGTGGTTTCTCAGGTTACACACAACATGCAAATTCCTCTATCCTATGCTGATGCTGTGATTGGAGCAGCTGGTGCTAGTATTAGCNATATTCGTAGGCACAGTG ]
[+] EMBL AU030947 [ TTGGA CAACTGGTGCTAGTATTAGCTATATTCNTAGGCACAGTGGTGCAACNGTAAC TTTTCAGGAAAG CAGAGG TGCACCTGGGNAGATGACAGTTGAGATAATTGGTAGTGCATCCCAAGTCCAAACTGCCCAGCAACTAGTCCAGAATTTCATGGCAGAAGCTCCTCAGGGCCCTCCTCCGCCAGCTTCTAACCCTCCGGCTCCAGCAGTTGATCTGAGCTACGGTTCATACCCACCACCATATGGCGCATCCTACGGATCGGCTGCTTCAGGAGCAGGGCCTGCNCCTCACAATGGAGGCAGCTACGGTGGCACCACCTACCCAAGCTATGGATACTAAGTATCAGCAACGCTCAGCTTAGCTTT GTGTCGGTTGATGAACAGTAGTACATTTTTGCTGCCGAATAATGACAATCCTGGATTCCTCAGCTGCGACTACCTTAAGCTCTTAGTTTACTTTTTCTACTCTTTTTGCCGTGTGTATGCCCAACCAGTTTACTTTTGGAATATGTTTATTCTCGTGGTCTGGATTAGTTATATAGTAATCCGATGCTGCCCTTTGTCGTCGGAAACAAGTGGTTGACTGTCTTTAAACTCGATTTTGGNGTGGNAAGTGCNGNNNTTTNCCAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI797441 [ CTATATTCGTAGGCACAGTGGTGCAACAGTAACGTATTCAGGAAAGTCAGAGGTTGCACCTGGGGAGATGACAGTTGAGATAATT GTAGTGCATCCCAAGTCCAAACTGCCCAGCAACTAGTCCAGAATTTCATGGCAGAAGCTCCTCAGGGCCCTCCTCCGCCAGCTTCTAACCCTCCGGCTCCAGCAGTTGATCCGAGCTACGGTTCATACCCACCACCATATGGCGCATCCTATGGATC GCTGCTTCAGGAGCAGGGCCTGCACCTCACAATGGA GCAGCTACGGTGGCACCACCTACCCAAGCTATGGATACTAAGTATCAGCAACGCTCAGCTTAGCTTTCGTGTCGGTTGATGAACAGTAGCACATTTTTGCTGCCGAATAATGACAATCCTGGATTCCTCAGCTGCGACTACCTTAAGCTCTTAGTATACTTTTTCTACTCTTTTTGCCGTGTGTATGCCCAACCAGTTTACTTTTGGAATATGTTTATTCTCGTGGTCTGGATTAGT TATAGTAAaaa ]
[+] EMBL AU173031 [ ACGGATCGGNTGCTTCAGGAGCAGGGCCTGCCCCTCNCAATGGAGGCAGNTACGGTGGCCCCCCCTACCCAAGCTATGGATATTAAGTATCAGCAACGCTCAGCTTAGCTTT GTGTCGGTTGATGAACAGTAGTACATTTTTGCTGCCGAATAATGACAATCCTGGATTCCTCAGCTGNGACTNCCTTAAGCTNTTAGTTTACTTTTTNTACTCTTTTTGCCGNGNGTATGCCCAACCAGTTTACTTTTGGAATATGTTTATTTTCGTGGTCTGGATTAGTTATATAGTAATCCGATGCTGCCCTTTGTNGTCGGAAACAAGTGGTTGACTGTCTTTAAACTCGATTTTGGGGTGGAAAGTGCTGAAATTTNCCNAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10242#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 459 fasta sequence
[AAATGCACAATGCACAGAGGGAACAAGCAATGGCAGCTCCTCAGCCTTGGGGCCCACCTCAACCTTGGGGCCCTCCTCCAAGCCACCTCCCTCCTGGTGGTCCAGGTTATGGTGGACATCCACAGTTCATGCCCCCAAGGCCGCAAGACAATTATTATCCTCCCCCTGATGTCCCCTCTATGGAAAAGCAGCCACACTACGGTATTTCTGCCTATGGACGAGAAGCACCAACTGGTGTTTCTGCTTCTGGGAATCAACCACCATCACATGTGGGCTTCTCANGTCAGTTTTTTGTTGCACNTTTGAGCTAAACACGATAGTACTTTTATCTTTAAAATGCTAATTCANGAGGCAGCTACTGATATGTGCATCCGTCAAAAGGTTACACACAACATGCAAATTCCTCTCTCCTATGCTGATGCTGTGATTGGAGCAGCTGGTGCTANTATTAGCTANATT]
[+] EMBL AU030948 [AAATGCACAATGCACAGAGGGAACAAGCAATGGCAGCTCCTCAGCCTTGGGGCCCACCTCAACCTTGGGGCCCTCCTCCAAGCCACCTCCCTCCTGGTGGTCCAGGTTATGGTGGACATCCACAGTTCATGCCCCCAAGGCCGCAAGACAATTATTATCCTCCCCCTGATGTCCCCTCTATGGAAAAGCAGCCACACTACGGTATTTCTGCCTATGGACGAGAAGCACCAACTGGTGTTTCTGCTTCTGGGAATCAACCACCATCACATGTGGGCTTCTCANGTCAGTTTTTTGTTGCACNTTTGA ]
[+] EMBL C74920 [ AATGCACAATGCACAGAGGGAACAAGCAATGGCAGCTCCTCAGCCTTGGGGCCCACCTCAACCTTGGGGCCCTCCTCCAAGCCACCTCCCTCCTGGTGGTCCAGGTTATGGTGGACATCCACAGTTCATNCCCCCAAGGCCGCAAGACAATTATTATCCTCCCCCTGATGTCCCCTCTATGGAAAAGCAGCCACACTACGGTATTTCTGCCTATGGACGAGAAGCACCAACTGGTGTTTCTGCTTCTGGGAATCAACCACCATCACATGT GGCTTCTCAGGTCAG TTTTTGTTGCAC TTTGAGCTAAACACGATAGTACTTTTATCTTTAAAATGCTAATTCANGAGGCAGCTACTGATATGTGCATCCGTCAAAAGGTTACACACAACATGCAAATTCCTCTCTCCTATGCTGATGCTGTGATTGGAGCAGCTGGTGCTANTATTAGCTANATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10242#0 AGAAACAGAGAGATCTCCCGTCTCGTCGTCTCCTCCGCTCCTTCCGCCTCCCCAACACGA 60
consensus_10242#1 ------------------------------------------------------------
consensus_10242#0 GTCGCGCCGCCGATCTCAGCAGGGGAGGGGAGGGGAGGGGATCCTGGTGAGCAAATATGG 120
consensus_10242#1 ------------------------------------------------------------
consensus_10242#0 ATGGACTGGTAGAGAATTTTGACGCAGATGATCTCGGCGAAATGCCTCAGAATCATTATA 180
consensus_10242#1 ------------------------------------------------------------
consensus_10242#0 ATGAAGAACAACTGATCCCCTACAGCGATGTGTCACATCCTTACAACGAAGAACCCGATA 240
consensus_10242#1 ------------------------------------------------------------
consensus_10242#0 ACATGGACAACGTAGAAGAGGGGAACCCATACATTCAGCAAGTGAGTTTGTACAGTGAAG 300
consensus_10242#1 ------------------------------------------------------------
consensus_10242#0 AACCAGAGAATCAGTACAATGAGGAGCCATCAAACCCTTATCAGGAAGAGTCGGATAATG 360
consensus_10242#1 ------------------------------------------------------------
consensus_10242#0 CATACAATGGGGAAGTGAAGCAACAGGATAGCTTGCCGGTAGAGGCTGATAAGAAATGGC 420
consensus_10242#1 ------------------------------------------------------------
consensus_10242#0 CTGGTTGGCCAGGAGAGAGTGTTTTTCGTATACTGATCCCAGCCCAGAAGGTAGGTGCTA 480
consensus_10242#1 ------------------------------------------------------------
consensus_10242#0 TCATTGGCCGCAAAGGGGAGTTTATCAAAAAGATGTGTGAGGAGTCTAAAGCTCGCATAA 540
consensus_10242#1 ------------------------------------------------------------
consensus_10242#0 AAATACTTGATGGCCCGCCTGGTGTACCAGAAAGAACAGTAATGATTTCAGCAAAGGATG 600
consensus_10242#1 ------------------------------------------------------------
consensus_10242#0 AGCCAGATGCACCTATATCTCCAGCTATGGACGGGTTATTTAGAGTCTATAAACGAATAA 660
consensus_10242#1 ------------------------------------------------------------
consensus_10242#0 CTGATGGTTCAGATGGTGATTCTGGTCAACCTGAAAGAAATATTAGTAATGTAGGACCAA 720
consensus_10242#1 ------------------------------------------------------------
consensus_10242#0 CACGACTGCTAGTACCAGCTTCCCAAGCTGGCAGCCTTATTGGGAAACAGGGAGCAACCA 780
consensus_10242#1 ------------------------------------------------------------
consensus_10242#0 TTAAATCCATTCAAGATTCTTCAAAGTCCATTGTTCGTATTGTTGAGACTTTGCCTCTTG 840
consensus_10242#1 ------------------------------------------------------------
consensus_10242#0 TTGCACTAAATGATGATAGAGTTGTGGAGATACAAGGTGAGCCTGTTGGTGTCCAGAAAG 900
consensus_10242#1 ------------------------------------------------------------
consensus_10242#0 CACTGGAATCGATAGCCAGTCACTTAAGAAAATTTCTTGTTGACCGCAGTGTTCTTCCTC 960
consensus_10242#1 ------------------------------------------------------------
consensus_10242#0 TTTTTGAAGGGCAAATGAAAATGCACAATGCACAGAGGGAACAAGCAATGGCAGCTCCTC 1020
consensus_10242#1 ------------------AAATGCACAATGCACAGAGGGAACAAGCAATGGCAGCTCCTC 42
******************************************
consensus_10242#0 AGCCTTGGGGCCCACCTCAACCTTGGGGCCCTCCTCCAAGCCACCTCCCTCCTGGTGGTC 1080
consensus_10242#1 AGCCTTGGGGCCCACCTCAACCTTGGGGCCCTCCTCCAAGCCACCTCCCTCCTGGTGGTC 102
************************************************************
consensus_10242#0 CAGGTTATGGTGGACATCCACAGTTCATGCCCCCAAGGCCGCAAGACAATTATTATCCTC 1140
consensus_10242#1 CAGGTTATGGTGGACATCCACAGTTCATGCCCCCAAGGCCGCAAGACAATTATTATCCTC 162
************************************************************
consensus_10242#0 CCCCTGATGTCCCCTCTATGGAAAAGCAGCCACACTACGGTATTTCTGCCTATGGACGAG 1200
consensus_10242#1 CCCCTGATGTCCCCTCTATGGAAAAGCAGCCACACTACGGTATTTCTGCCTATGGACGAG 222
************************************************************
consensus_10242#0 AAGCACCAACTGGTGTTTCTGCTTCTGGGAATCAACCACCATCACATGTGG-CTTCTCAG 1259
consensus_10242#1 AAGCACCAACTGGTGTTTCTGCTTCTGGGAATCAACCACCATCACATGTGGGCTTCTCAN 282
*************************************************** *******
consensus_10242#0 GTTACACACAACATGCAAATTCCTCTCTCCTATGCTGATGCTGTGAT--TGGAGCAGCTG 1317
consensus_10242#1 GTCAGTTTTTTGTTGCACNTTTGAGCTAAACACGATAGTACTTTTATCTTTAAAATGCTA 342
** * **** ** * * * * ** * ** * * ***
consensus_10242#0 GTGCTAGTATTAGCTATATTCGTAGGCACAGTGGTGCAACAGTAACTATTCAGGAAAGCA 1377
consensus_10242#1 ATTCANGAGGCAGCTA--CTGATATGTGCATCCGTCAAAAGGTTAC-ACACAACAT-GCA 398
* * * ***** * ** * ** ** ** ** ** * ** * ***
consensus_10242#0 GAGGTGCACCTGGGGAGATGACAGTTGAGAT---AATTGGTAGTGCATCCCAAGTCCAAA 1434
consensus_10242#1 AATTCCTCTCTCCTATGCTGAT-GCTGTGATTGGAGCAGCTGGTGCTANTATTAGCTANA 457
* ** * *** * ** *** * * * **** * * *
consensus_10242#0 CTGCCCAGCAACTAGTCCAGAATTTCATGGCAGAAGCTCCTCAGGGCCCTCCTCCGCCAG 1494
consensus_10242#1 TT---------------------------------------------------------- 459
*
consensus_10242#0 CTTCTAACCCTCCGGCTCCAGCAGTTGATCTGAGCTACGGTTCATACCCACCACCATATG 1554
consensus_10242#1 ------------------------------------------------------------
consensus_10242#0 GCGCATCCTACGGATCGGCTGCTTCAGGAGCAGGGCCTGCACCTCACAATGGAGGCAGCT 1614
consensus_10242#1 ------------------------------------------------------------
consensus_10242#0 ACGGTGGCACCACCTACCCAAGCTATGGATACTAAGTATCAGCAACGCTCAGCTTAGCTT 1674
consensus_10242#1 ------------------------------------------------------------
consensus_10242#0 TGTGTCGGTTGATGAACAGTAGTACATTTTTGCTGCCGAATAATGACAATCCTGGATTCC 1734
consensus_10242#1 ------------------------------------------------------------
consensus_10242#0 TCAGCTGCGACTACCTTAAGCTCTTAGTTTACTTTTTCTACTCTTTTTGCCGTGTGTATG 1794
consensus_10242#1 ------------------------------------------------------------
consensus_10242#0 CCCAACCAGTTTACTTTTGGAATATGTTTATTCTCGTGGTCTGGATTAGTTATATAGTAA 1854
consensus_10242#1 ------------------------------------------------------------
consensus_10242#0 TCCGATGCTGCCCTTTGTCGTCGGAAACAAGTGGTTGACTGTCTTTAAACTCGATTTTGG 1914
consensus_10242#1 ------------------------------------------------------------
consensus_10242#0 GGTGGAAAGTGCTGNNNTTTNCCAAAAAAAAAAAAAAAAAAAAAAAA 1961
consensus_10242#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||