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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10245#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 965 fasta sequence
[TTTTTTTAATAGCATACACACAATTAATTAATTGAAGTCTATAAGGTAATTATGCATCCTTTTTCCTGGAAGCTGAGCCAGGGTGTTCGATCCAGCACTTTTTCTAGTGGTAGATCAGCGTCTGTATGTATGTATGTATCTACATGACTACGAAGCAATAAAATAAAAGATATTTCTGCAATTGAACTGCCTCCCATCACGCGGTGAGGTCGGACAGCTTGAAGGAGTCGGCGACGACTTTGAGCCTGTTCCTCAGCCTACTCCATCGCCGCTCGTTCGCCGTCACGATCAGTGTGTAGTACCGACCGTTTCCAATGACAACCGTCGCAAATGCGGACACGCCGTAGCCCGGGGCCTCAAGATCGTACTCAAATGTCCAGTAGTTCTTGCCATCCACGGTGCGCTCTTGCATGTCATAGACAGTTGGTATTTGATTTGGAGCAGCATAAACATTGTTCACCAAATTGAAGATCGCCTCATCCATTGGACCAAGGTCACGGATATCTGTTTTTGTAGTAGGAATGAAGCCCACAC-GCACGCACTGCAGCGCTACATTACGATCTTTGAACGCTGAATCATGCCCCAGGAAGTCGA-AAT-CCCTCCAATCAGCTGGATACAGGTATGAATATCCATCTTTTGAATCCACATAAGACTTGTAATTCTTTGGCACTTCTT-CAGCATATGCAGAGCTGCTCTTTAGCAGACCAGTGGCTAATGCTCCAGCA-CCAAGCAGAGCTAATCTCCTCCTTGTCACATTCTTTTCATCCGAGGATGCTTCACTCGAGCTAGCGTTGACGACTGACAGAGGAGACGCATTCAGCTTGCTGGTAACAGCACAATTTGGAGCAACCAACTGCTTGGAAACGGAGCAGATCAAATTCTGCAGGCTTGCCATTTCACCTGCAGGAGTAGCTATGAACCTGAAGAAAATACGTGTTCTTGCCTTCCTCCAGTCAAGTTATCCT]
[+] EMBL CF298237 [TTTTTTTAATAGCATACACACAATTAATTAATTGAAGTCTATAAGGTAATTATGCATCCTTTTTCCTGGAAGCTGAGCCAGGGTGTTCGATCCAGCACTTTTTCTAGTGGTAGATCAGCGTCTGTATGTATGTATGTATCTACATGACTACGAAGCAATAAAATAAAAGATATTTCTGCAATTGAACTGCCTCCCATCACGCGGTGAGGTCGGACAGCTTGAAGGAGTCGGCGACGACTTTGAGCCTGTTCCTCAGCCTACTCCATCGCCGCTCGTTCGCCGTCACGATCAGTGTGTAGTACCGACCGTTTCCAATGACAACCGTCGCAAATGCGGACACGCCGTAGCCCGGGGCCTCAAGATCGTACTCAAATGTCCAGTAGTTCTTGCCATCCACGGTGCGCTCTTGCATGTCATAGACAGTTGGTATTTGATTTGGAGCAGCATAAACATTGTTCACCAAATTGAAGATCGCCTCATCCATTGGACCAAGGTCACGGATATCTGTTTTTGTAGTAGGAATGAAGCCCACAC GCACGCACTGCAGCGCTACATTACGATCTTTGAACGCT ]
[-] EMBL AA754400 [ CCTCCCATCACGCGGTGAGGTCGGACAGCTTGAAGGAGTCGGCGACGACTTTGAGKCTGTTCCTCAGKCTWCTCCATCGCCGCTCGTTCGCCGTCACGATCAGTGTGTAGTACCGACCGTTTCCAATGGCAACCGTCGCAAATGCGGACACGCCGTAGCCCGGGGCCTCAAGATCGTACTCAAATGTCCAGTAGTTCTTGCCATCCACGGTGCGCTCTTGCATGTCATAGACAGTTGGTATTTGATTTGGAGCAGCATAAACATTGTTCACCAAATTGAAGATCGCCTCATCCATTGGACCAAGGTCACGGATATCTGTTTTTGTAGTAGGAATGAAGCCCACAC GCACGCACTGCAGCGCTACATTACGATCTTTGAACGCTGAATCATGCCCCAGGAAGTCGA AAT CCCTCCAATCAGGTGGActcg ]
[-] EMBL CF298238 [ CCTCATCCATTGGACCAAGGTCACGGATATCTGTTTTTGTAGTAGGAATGAAGCCCACAC GCACGCACTGCAGCGCTACATTACGATCTTTGAACGCTGAATCATGCCCCAGGAAGTCGA AAT CCCTCCAATCAGCTGGATACAGGTATGAATATCCATCTTTTGAATCCACATAAGACTTGTAATTCTTTGGCACTTCTT CAGCATATGCAGAGCTGCTCTTTAGCAGACCAGTGGCTAATGCTCCAGCA CCAAGCAGAGCTAATCTCCTCCTTGTCACATTCTAAACATCCGAGGATGCTTCACTCGAGCTAGCGTTGACGACTGACAGAGGAGACGCATTCAGCTTGCTGGTAACAGCACAATTTGGAGCAACCAACTGC TGGAAACGGAGCAGATCAAATTCTGCAGGCTTGCCATTTCA ]
[-] EMBL CF308597 [ CCAAGGTCACGGATATCTGTTTTTGTAGTAGGAATGAAGCCCACAC GCACGCACTGCAGCGNTACATTACGATCTTTGAACGCTGAATCATGCCNCAGGAAGTCGA AATCCCCTCCAATCAGCTGGATACAGGTATGAATATCCATCTTTTGAATCCACATAAGACTTGTAATTCTTTGGCACTTCTTNCAGCATATGCAGAGCTGCTCTTTAGCAGACCAGTGGCTAATGCTCCAGCA CCAAGCAGAGCTAATCTCCTCCTTGTCACATTCTTTTCATCCGAGGATGCTTCACTCGAGCTAGCGTTGACGACTGACAGAGGAGACGCATTCAGCTTGCTGGTAACAGCACAATTTGGAGCAACCAACTGCTTGGAAACGGAGCAGATCAAATTCTGCAGGCTTGCCATTTCACCTGCAGGAGTAGCTATGAACCTGAAGAAAATACGTGTTCTTGCCTTCCTCCAGTCAA ]
[-] EMBL CF308134 [ AGGTCACGGATATCTGTTTTTGTAGTAGGAATGAAGCCCACACGGCACGCANTGCAGCGCTACATTACGATCTTTGAACGCTGAATCATGCCCCAGGAAGTCGANAATCCCCTCCAATCAGCTGGATACAGGTATGAATATCCATCTTTTGAATCCACATAAGACTTGTAATTCTTTGGCACTTCTTCCAGCATATGCAGAGCTGCTCTTTAGCAGACCAGTGGCTAATGCTCCAGCA CCAAGCAGAGCTAATCTCCTCCTTGTCACATTCTTTTCATCCGAGGATGCTTCACTCGAGCTAGCGTTGACGACTGACAGAGGAGACGCATTCAGCTTGCTGGTAACAGCACAATTTGGAGCAACCAACTGCTTGGAAACGGAGCAGATCAAATTCTGCAGGCTCGCCATTTCACCTGCAGGAGTAGCTATGAACCTGAAGAAAATACGTGTTCTTGCCTTCCTCCAGTCAAGTTATCCT]
[-] EMBL OSS10335A [ GCATATGCAGAGCTGCTCTTTAGCAGACCAGTGGCTAATGCTCCAGCACCCAAGCAGAGCTAATCTCCTCCTTGTNACATTCTTTTCATCCGAGGATGCTTAACTCGAGCTAGCGTTGACGACTGACAGAGGAGACGCATTCAGCTTGCTGGTAACAGCACAATTTGGAGCAACCAACTGCTTGGAAACGGAGCAGATCAAATTCTGCAGGCTTGCCATTTCACCTGCAGGAGTAGCTATGAACCTGAAGAAAATACGTGTTCTTGCCTT ]
consensusID : consensus_10245#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence
[ATTTGCAAGTCTATAAGGTAATTATGCATCTTTTTCCTGGAAGCTGAGCCAGGGTGTTCGATCCAGCACCTTTTCTAGTGGTAGTTCAGCGTCTGTATGTATGTATGTATGTATCTACATGACTACGGAGCAATAAAATAAAAGATATTTCTGCAATTGAACTGCCTCCCATCACGCGGTGAGGTCGGACAGCTTGAAGGAGTCGGCGACGACTTTTGAGCCTGTTCCTCAGCCTACTCCATCGCCGCTCGTCGCCGTCACGATCAGTGTGTAGTACCGCCGTTCATGGCACCGTCGAAATCTGCACGCGTAGCCCGTGCTCAAGATCGYACTCWMATGTC]
[+] EMBL OS37964 [ATTTGCAAGTCTATAAGGTAATTATGCATCTTTTTCCTGGAAGCTGAGCCAGGGTGTTCGATCCAGCACCTTTTCTAGTGGTAGTTCAGCGTCTGTATGTATGTATGTATGTATCTACATGACTACGGAGCAATAAAATAAAAGATATTTCTGCAATTGAACTGCCTCCCATCACGCGGTGAGGTCGGACAGCTTGAAGGAGTCGGCGACGACTTTTGAGCCTGTTCCTCAGCCTACTCCATCGCCGCTCGTCGCCGTCACGATCAGTGTGTAGTACCGCCGTTCATGGCACCGTCGAAATCTGCACGCGTAGCCCGTGCTCAAGATCGYACTCWMATGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10245#0 TTTTTTTAATAGCATACACACAATTAATTAATTG-AAGTCTATAAGGTAATTATGCATCC 59
consensus_10245#1 -----------------------------ATTTGCAAGTCTATAAGGTAATTATGCATC- 30
* *** ************************
consensus_10245#0 TTTTTCCTGGAAGCTGAGCCAGGGTGTTCGATCCAGCACTTTTTCTAGTGGTAGATCAGC 119
consensus_10245#1 TTTTTCCTGGAAGCTGAGCCAGGGTGTTCGATCCAGCACCTTTTCTAGTGGTAGTTCAGC 90
*************************************** ************** *****
consensus_10245#0 GTCTGTATGTATGTATGTAT----CTACATGACTACGAAGCAATAAAATAAAAGATATTT 175
consensus_10245#1 GTCTGTATGTATGTATGTATGTATCTACATGACTACGGAGCAATAAAATAAAAGATATTT 150
******************** ************* **********************
consensus_10245#0 CTGCAATTGAACTGCCTCCCATCACGCGGTGAGGTCGGACAGCTTGAAGGAGTCGGCGAC 235
consensus_10245#1 CTGCAATTGAACTGCCTCCCATCACGCGGTGAGGTCGGACAGCTTGAAGGAGTCGGCGAC 210
************************************************************
consensus_10245#0 GACTTT-GAGCCTGTTCCTCAGCCTACTCCATCGCCGCTCGTTCGCCGTCACGATCAGTG 294
consensus_10245#1 GACTTTTGAGCCTGTTCCTCAGCCTACTCCATCGCCGCTCGT-CGCCGTCACGATCAGTG 269
****** *********************************** *****************
consensus_10245#0 TGTAGTACCGACCGTTTCCAATGACAACCGTCGCAAATGCGGACACGCCGTAGCCCGGGG 354
consensus_10245#1 TGTAGTACCG-CCGTTC---ATGGCA-CCGTCG-AAATCTGCACG---CGTAGCCCGTG- 319
********** ***** *** ** ****** **** * ** ********* *
consensus_10245#0 CCTCAAGATCGTACTCAAATGTCCAGTAGTTCTTGCCATCCACGGTGCGCTCTTGCATGT 414
consensus_10245#1 -CTCAAGATCGYACTCWMATGTC------------------------------------- 341
********** **** *****
consensus_10245#0 CATAGACAGTTGGTATTTGATTTGGAGCAGCATAAACATTGTTCACCAAATTGAAGATCG 474
consensus_10245#1 ------------------------------------------------------------
consensus_10245#0 CCTCATCCATTGGACCAAGGTCACGGATATCTGTTTTTGTAGTAGGAATGAAGCCCACAC 534
consensus_10245#1 ------------------------------------------------------------
consensus_10245#0 GCACGCACTGCAGCGCTACATTACGATCTTTGAACGCTGAATCATGCCCCAGGAAGTCGA 594
consensus_10245#1 ------------------------------------------------------------
consensus_10245#0 AATCCCTCCAATCAGCTGGATACAGGTATGAATATCCATCTTTTGAATCCACATAAGACT 654
consensus_10245#1 ------------------------------------------------------------
consensus_10245#0 TGTAATTCTTTGGCACTTCTTCAGCATATGCAGAGCTGCTCTTTAGCAGACCAGTGGCTA 714
consensus_10245#1 ------------------------------------------------------------
consensus_10245#0 ATGCTCCAGCACCAAGCAGAGCTAATCTCCTCCTTGTCACATTCTTTTCATCCGAGGATG 774
consensus_10245#1 ------------------------------------------------------------
consensus_10245#0 CTTCACTCGAGCTAGCGTTGACGACTGACAGAGGAGACGCATTCAGCTTGCTGGTAACAG 834
consensus_10245#1 ------------------------------------------------------------
consensus_10245#0 CACAATTTGGAGCAACCAACTGCTTGGAAACGGAGCAGATCAAATTCTGCAGGCTTGCCA 894
consensus_10245#1 ------------------------------------------------------------
consensus_10245#0 TTTCACCTGCAGGAGTAGCTATGAACCTGAAGAAAATACGTGTTCTTGCCTTCCTCCAGT 954
consensus_10245#1 ------------------------------------------------------------
consensus_10245#0 CAAGTTATCCT 965
consensus_10245#1 -----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||