cluster # 10253

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Oryza sativa
cluster # 10253 cluster # 10253 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10253#0 length = 387 sequences # 6

consensus_10253#1 length = 243 sequences # 1

consensusID : consensus_10253#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 387
fasta sequence

                              [CCGCCCACGCGTCCGCTTCTTCTCTCCTCCTTTCCTCCCATCCTTCTCTTCCTTCTTCTCTCACCCCATCTCCTCCTCCCCTCTCCTCCCCTCCAGC-GGGGC-GGCGGGATGGAGGCCGGCCACGGC-GGCCCC-GGACAGGGCGACGGGATGGAGGCCTCCGCGGCGGCCCGACGCGAGGCGACGAGATGGAGGCGGCGGCGGGCTGCATCGAGGGCGGC-GGCGACCGGCGCCGGTCGAGAGGGGCGGTGGCCGGCTGCATCGGGCGCGGGG-C-GGCGAGATGGGGGCGACTGGCGCCGGTCGAGGTGGCGGTGGCCGGCGCCGGTCGAGAGGGCGGCAGCCGGCTGCGTCGGGGACAGCCGGCGCCGGTCGGGAGGGCGGCGGCGGCAG]

[+] EMBL AU069176             [CCGCCCACGCGTCCGCTTCTTCTCTCCTCCTTTCCTCCCATCCTTCTCTTCCTTCTTCTCTCACCCCATCTCCTCCTCCCCTCTCCTCCCCTCCAGC GGGGC GGCGGGATGGAGGCCGGCCACGGG NGCCCC GGACAGGGCGACGGG                                                                                                                                                                                                                                                   ]
[+] EMBL CB655215             [                                              TCTTCCTTCTTCTCTCACCCCATCTCCTCCTCCCCTCTCCTCCCCTCCAGC GGGGC GGCGGGATGGAGGCCGGCCACGGC GGCCCC GGACAGGGCGACGGGATGGAGGCCTCCGCGGCGGCCCGACGCGAGGCGACGAGATGGAGGCGGCGGCGGGCTGCATCGAGGGCGGC GGCGACCGGCGCCGGTCGAGAGGGGCGGTGGCCGGCTGCATCGGGCGCGGGG C GGCGAGATGGGGGCGACTGGCGCCGGTCGAGGTGGCGGTGGCCGGTTTCTGTCGAGAGGGCGGCAGCCGGCTGCGTCCGGGACAGCCGGCGCCGGTCGGGAGGGCGGCGGCGGCA ]
[-] EMBL BP432977             [                                                               CCCCATCTCCTCCTCCCCTCTCCTCCCCTCCAGC GGGGC GGCGGGATGGAGGCCGGCCACGGC GGCCCC GGACAGGGCGACGGGATGGAGGCCTCCGCGGCGGCCCGACGCGAGGCGACGAGATGGAGGCGGCGGCGGGCTGCATCMAGGGCGYC GGCGACCGGCMCCGGTCSAGAGGGSCGGTGGCCGGCTGCATCGGGCGCGGGGTC GGCGAGATGGGGGCGACTGGCGCCGGTCGAGGTGYCGGTGGCCGGCGCCGGTCGAGAGGGCGGCAGCCGGCTGCGTCGGGGACAGCCGGCGCCGGTCGGGAGGGCGGCGGCGGCAG]
[+] EMBL AU164059             [                                                               CCCCATCTCCTCCTCCCCTCTCCTCCCCTCCAGC GGGGC GGCGGGATGGAGGCCGGCCAC GC GGCCCC GGACAGGGCGACGGGATGGAGGCCTCCGCGGCGGCCCGACG GAGGCGACGAGATGGAGGCGGCGGCGGGCTGCATCGAGGGCGGC GGCGACCGGCGCCGGTCGGGA GGGCGGCGG CGGCa                                                                                                                                      ]
[+] EMBL AU182566             [                                                                    TCTCCTCCTCCCCTCTCCTCCCCTCCAGCTGGGGCNGGCGGGATGGAGGCCGGCCACGGCAGGCCCCAGGACAGGGCGACGGNATGGAGGCCTCCGCGGCGGCCCGACGCGAGGCGACGAGATGGAGGCGGNGGCGGGCTGCATCGAGGGCGGCTGGCGACCGGCGCCGGTCGAGAGGGGCGGTGGCCGGCTGCATNGGNCGCGGNG CNGGCGAGATGGGGGCGACTGGCGCCGNTCGAGGTG                                                                                  ]
[+] EMBL AU182567             [                                                                                                                                                              CCTCCGCGGCGGCCCGACGCGAGGCGACGAGATGGAGGCGGCGGCGGGCTGCATCGAGGGCGGC GGCGACCGGCGCCGGTCGAGAGGGGCGGTGGCCGGCTGCATCGGGCGCGGGG C GGCGAGATGGGGGCGACTGGCGCCGGTCNAGGTGGCGGTGGCCGGCGCCGGTCGAGAGGGCGGCAGCCGGCTGCGTCGGGGACAGCCGGCGCCGGTCGGGAGGGCGGCGGCGGCA ]




>consensus_10253#0
CCGCCCACGCGTCCGCTTCTTCTCTCCTCCTTTCCTCCCATCCTTCTCTTCCTTCTTCTC
TCACCCCATCTCCTCCTCCCCTCTCCTCCCCTCCAGCGGGGCGGCGGGATGGAGGCCGGC
CACGGCGGCCCCGGACAGGGCGACGGGATGGAGGCCTCCGCGGCGGCCCGACGCGAGGCG
ACGAGATGGAGGCGGCGGCGGGCTGCATCGAGGGCGGCGGCGACCGGCGCCGGTCGAGAG
GGGCGGTGGCCGGCTGCATCGGGCGCGGGGCGGCGAGATGGGGGCGACTGGCGCCGGTCG
AGGTGGCGGTGGCCGGCGCCGGTCGAGAGGGCGGCAGCCGGCTGCGTCGGGGACAGCCGG
CGCCGGTCGGGAGGGCGGCGGCGGCAG

consensusID : consensus_10253#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 243
fasta sequence

                              [CGAGCTCGTSCCCTTCACCCCATCTCCTCCTCCCCTCTMCTVCCCTCCAGCGGGGCGGCGGGATGGAGGCCGGCCACGSGGCCCCGGACAGGGCGACGGGATGGAGGCCTCCGMGGCGGCCCGACGSGAGGCGACGAGATGGAGGCGCCGGCGGGCTGCATCGAGGGCGGCGGCGACCGCGCGCCGGTCGAGAGGRGCGGTGGCCGCTGCATCGGGCGCRGGGCGGCGAGATTGGGVMMCTAG]

[+] EMBL BE230749             [CGAGCTCGTSCCCTTCACCCCATCTCCTCCTCCCCTCTMCTVCCCTCCAGCGGGGCGGCGGGATGGAGGCCGGCCACGSGGCCCCGGACAGGGCGACGGGATGGAGGCCTCCGMGGCGGCCCGACGSGAGGCGACGAGATGGAGGCGCCGGCGGGCTGCATCGAGGGCGGCGGCGACCGCGCGCCGGTCGAGAGGRGCGGTGGCCGCTGCATCGGGCGCRGGGCGGCGAGATTGGGVMMCTAG]




>consensus_10253#1
CGAGCTCGTSCCCTTCACCCCATCTCCTCCTCCCCTCTMCTVCCCTCCAGCGGGGCGGCG
GGATGGAGGCCGGCCACGSGGCCCCGGACAGGGCGACGGGATGGAGGCCTCCGMGGCGGC
CCGACGSGAGGCGACGAGATGGAGGCGCCGGCGGGCTGCATCGAGGGCGGCGGCGACCGC
GCGCCGGTCGAGAGGRGCGGTGGCCGCTGCATCGGGCGCRGGGCGGCGAGATTGGGVMMC
TAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10253#0      CCGCCCACGCGTCCGCTTCTTCTCTCCTCCTTTCCTCCCATCCTTCTCTTCCTTCTTCTC 60
consensus_10253#1      ---------------------------------------------CGAGCTCGTSCCCT- 14
                                                                    *     * *   ** 

consensus_10253#0      TCACCCCATCTCCTCCTCCCCTCTCCTCCCCTCCAGCGGGGCGGCGGGATGGAGGCCGGC 120
consensus_10253#1      TCACCCCATCTCCTCCTCCCCTCTMCTVCCCTCCAGCGGGGCGGCGGGATGGAGGCCGGC 74
                       ************************ ** ********************************

consensus_10253#0      CACGGCGGCCCCGGACAGGGCGACGGGATGGAGGCCTCCGCGGCGGCCCGACGCGAGGCG 180
consensus_10253#1      CACGS-GGCCCCGGACAGGGCGACGGGATGGAGGCCTCCGMGGCGGCCCGACGSGAGGCG 133
                       ****  ********************************** ************ ******

consensus_10253#0      ACGAGATGGAGGCGGCGGCGGGCTGCATCGAGGGCGGCGGCGACCG-GCGCCGGTCGAGA 239
consensus_10253#1      ACGAGATGGAGGCGCCGGCGGGCTGCATCGAGGGCGGCGGCGACCGCGCGCCGGTCGAGA 193
                       ************** ******************************* *************

consensus_10253#0      GGGGCGGTGGCCGGCTGCATCGGGCGCGGGGCGGCGAGATGGGGGCGACTGGCGCCGGTC 299
consensus_10253#1      GGRGCGGTGGCCG-CTGCATCGGGCGCRGGGCGGCGAGATTGGGVM-MCTAG-------- 243
                       ** ********** ************* ************ ***    ** *        

consensus_10253#0      GAGGTGGCGGTGGCCGGCGCCGGTCGAGAGGGCGGCAGCCGGCTGCGTCGGGGACAGCCG 359
consensus_10253#1      ------------------------------------------------------------
                                                                                   

consensus_10253#0      GCGCCGGTCGGGAGGGCGGCGGCGGCAG 387
consensus_10253#1      ----------------------------