These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10253#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 387 fasta sequence [CCGCCCACGCGTCCGCTTCTTCTCTCCTCCTTTCCTCCCATCCTTCTCTTCCTTCTTCTCTCACCCCATCTCCTCCTCCCCTCTCCTCCCCTCCAGC-GGGGC-GGCGGGATGGAGGCCGGCCACGGC-GGCCCC-GGACAGGGCGACGGGATGGAGGCCTCCGCGGCGGCCCGACGCGAGGCGACGAGATGGAGGCGGCGGCGGGCTGCATCGAGGGCGGC-GGCGACCGGCGCCGGTCGAGAGGGGCGGTGGCCGGCTGCATCGGGCGCGGGG-C-GGCGAGATGGGGGCGACTGGCGCCGGTCGAGGTGGCGGTGGCCGGCGCCGGTCGAGAGGGCGGCAGCCGGCTGCGTCGGGGACAGCCGGCGCCGGTCGGGAGGGCGGCGGCGGCAG] [+] EMBL AU069176 [CCGCCCACGCGTCCGCTTCTTCTCTCCTCCTTTCCTCCCATCCTTCTCTTCCTTCTTCTCTCACCCCATCTCCTCCTCCCCTCTCCTCCCCTCCAGC GGGGC GGCGGGATGGAGGCCGGCCACGGG NGCCCC GGACAGGGCGACGGG ] [+] EMBL CB655215 [ TCTTCCTTCTTCTCTCACCCCATCTCCTCCTCCCCTCTCCTCCCCTCCAGC GGGGC GGCGGGATGGAGGCCGGCCACGGC GGCCCC GGACAGGGCGACGGGATGGAGGCCTCCGCGGCGGCCCGACGCGAGGCGACGAGATGGAGGCGGCGGCGGGCTGCATCGAGGGCGGC GGCGACCGGCGCCGGTCGAGAGGGGCGGTGGCCGGCTGCATCGGGCGCGGGG C GGCGAGATGGGGGCGACTGGCGCCGGTCGAGGTGGCGGTGGCCGGTTTCTGTCGAGAGGGCGGCAGCCGGCTGCGTCCGGGACAGCCGGCGCCGGTCGGGAGGGCGGCGGCGGCA ] [-] EMBL BP432977 [ CCCCATCTCCTCCTCCCCTCTCCTCCCCTCCAGC GGGGC GGCGGGATGGAGGCCGGCCACGGC GGCCCC GGACAGGGCGACGGGATGGAGGCCTCCGCGGCGGCCCGACGCGAGGCGACGAGATGGAGGCGGCGGCGGGCTGCATCMAGGGCGYC GGCGACCGGCMCCGGTCSAGAGGGSCGGTGGCCGGCTGCATCGGGCGCGGGGTC GGCGAGATGGGGGCGACTGGCGCCGGTCGAGGTGYCGGTGGCCGGCGCCGGTCGAGAGGGCGGCAGCCGGCTGCGTCGGGGACAGCCGGCGCCGGTCGGGAGGGCGGCGGCGGCAG] [+] EMBL AU164059 [ CCCCATCTCCTCCTCCCCTCTCCTCCCCTCCAGC GGGGC GGCGGGATGGAGGCCGGCCAC GC GGCCCC GGACAGGGCGACGGGATGGAGGCCTCCGCGGCGGCCCGACG GAGGCGACGAGATGGAGGCGGCGGCGGGCTGCATCGAGGGCGGC GGCGACCGGCGCCGGTCGGGA GGGCGGCGG CGGCa ] [+] EMBL AU182566 [ TCTCCTCCTCCCCTCTCCTCCCCTCCAGCTGGGGCNGGCGGGATGGAGGCCGGCCACGGCAGGCCCCAGGACAGGGCGACGGNATGGAGGCCTCCGCGGCGGCCCGACGCGAGGCGACGAGATGGAGGCGGNGGCGGGCTGCATCGAGGGCGGCTGGCGACCGGCGCCGGTCGAGAGGGGCGGTGGCCGGCTGCATNGGNCGCGGNG CNGGCGAGATGGGGGCGACTGGCGCCGNTCGAGGTG ] [+] EMBL AU182567 [ CCTCCGCGGCGGCCCGACGCGAGGCGACGAGATGGAGGCGGCGGCGGGCTGCATCGAGGGCGGC GGCGACCGGCGCCGGTCGAGAGGGGCGGTGGCCGGCTGCATCGGGCGCGGGG C GGCGAGATGGGGGCGACTGGCGCCGGTCNAGGTGGCGGTGGCCGGCGCCGGTCGAGAGGGCGGCAGCCGGCTGCGTCGGGGACAGCCGGCGCCGGTCGGGAGGGCGGCGGCGGCA ] consensusID : consensus_10253#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 243 fasta sequence [CGAGCTCGTSCCCTTCACCCCATCTCCTCCTCCCCTCTMCTVCCCTCCAGCGGGGCGGCGGGATGGAGGCCGGCCACGSGGCCCCGGACAGGGCGACGGGATGGAGGCCTCCGMGGCGGCCCGACGSGAGGCGACGAGATGGAGGCGCCGGCGGGCTGCATCGAGGGCGGCGGCGACCGCGCGCCGGTCGAGAGGRGCGGTGGCCGCTGCATCGGGCGCRGGGCGGCGAGATTGGGVMMCTAG] [+] EMBL BE230749 [CGAGCTCGTSCCCTTCACCCCATCTCCTCCTCCCCTCTMCTVCCCTCCAGCGGGGCGGCGGGATGGAGGCCGGCCACGSGGCCCCGGACAGGGCGACGGGATGGAGGCCTCCGMGGCGGCCCGACGSGAGGCGACGAGATGGAGGCGCCGGCGGGCTGCATCGAGGGCGGCGGCGACCGCGCGCCGGTCGAGAGGRGCGGTGGCCGCTGCATCGGGCGCRGGGCGGCGAGATTGGGVMMCTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10253#0 CCGCCCACGCGTCCGCTTCTTCTCTCCTCCTTTCCTCCCATCCTTCTCTTCCTTCTTCTC 60 consensus_10253#1 ---------------------------------------------CGAGCTCGTSCCCT- 14 * * * ** consensus_10253#0 TCACCCCATCTCCTCCTCCCCTCTCCTCCCCTCCAGCGGGGCGGCGGGATGGAGGCCGGC 120 consensus_10253#1 TCACCCCATCTCCTCCTCCCCTCTMCTVCCCTCCAGCGGGGCGGCGGGATGGAGGCCGGC 74 ************************ ** ******************************** consensus_10253#0 CACGGCGGCCCCGGACAGGGCGACGGGATGGAGGCCTCCGCGGCGGCCCGACGCGAGGCG 180 consensus_10253#1 CACGS-GGCCCCGGACAGGGCGACGGGATGGAGGCCTCCGMGGCGGCCCGACGSGAGGCG 133 **** ********************************** ************ ****** consensus_10253#0 ACGAGATGGAGGCGGCGGCGGGCTGCATCGAGGGCGGCGGCGACCG-GCGCCGGTCGAGA 239 consensus_10253#1 ACGAGATGGAGGCGCCGGCGGGCTGCATCGAGGGCGGCGGCGACCGCGCGCCGGTCGAGA 193 ************** ******************************* ************* consensus_10253#0 GGGGCGGTGGCCGGCTGCATCGGGCGCGGGGCGGCGAGATGGGGGCGACTGGCGCCGGTC 299 consensus_10253#1 GGRGCGGTGGCCG-CTGCATCGGGCGCRGGGCGGCGAGATTGGGVM-MCTAG-------- 243 ** ********** ************* ************ *** ** * consensus_10253#0 GAGGTGGCGGTGGCCGGCGCCGGTCGAGAGGGCGGCAGCCGGCTGCGTCGGGGACAGCCG 359 consensus_10253#1 ------------------------------------------------------------ consensus_10253#0 GCGCCGGTCGGGAGGGCGGCGGCGGCAG 387 consensus_10253#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||