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Oryza sativa
cluster # 10254 cluster # 10254       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10254#0 length = 1887 sequences # 4  
consensus_10254#1 length = 1401 sequences # 2  
consensus_10254#2 length = 776 sequences # 1  

consensusID : consensus_10254#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1887
fasta sequence
                              [GCTCTCCAGTCTCCACCTCCTCTCGACGCTCGACAGGAAGACGCGCCGCCGCCGCCGCCCATCCGACGCCGCGACGCCGACGTGCCGTGCGTCCGTGACGCCGCCGCCGCCAATCCCTCCCGCCTTCGCGTCGTGCCGCCGCGCCGTCGGTGGTCGCCCGTCACCCGTCGCCGGCTCGCCGCGTCTTTTGGGTGGCGCCGTCGCGCCTCGTATCCAATCCACCCCGCGCCGCGCCGCGCCGTGCCGCCGCCCCCAAGAGGCCGAGACGCCCAAGTCCCAACTCCCAACGGCCAAAGTAATCGTTGAAGGTGACAGGTCAACATCCCACGTCATGCCTCTCCTCCGCCGGCCGCCGGCTGCTCCCCACCGCACCCCGATCCACCATGACAAGCGCCTTCACCTCTTCAGTACACACAACACCCGTCATAGAGCTACCGTCTCATCTCTCCCTGTCACCTGCCTTCGCATCCGATACAGCAGCAGCAACCCGGTTCGACACCTTTGTGGCATTCCGTCGAGCAGGTGCCATGCGGCTGCTGATCCGGCGCCCTCCAAGATACCAGGAGGTGGCAGCGGTGCATTGGAGGCTGGAGTTGTAGGTTGGCGGGATCTGCTTTTGCAGGTTGGCGAGGTGCTGTCGCTTGGGTTCCCAGTGTGGGTGGCGTCCGCTTGCGCCGTTGCGCTTTGGCGGCCACCGGCCTTCCTCTGGGTCAGTCCCATGGCCCAGATTGTCGGCATTTCCTTTACCATGCTGGGAATGGGAATGACATTGACATTAGATGACCTGAAAACTGCACTATTGATGCCCAAGGAGTTAGCATCTGGGTTTTTACTTCAATACTCGGTGATGCCACTGTCAGGATTTCTCATCAGCAAGCTATTAAACTTACCATCCTATTATGCTGCTGGATTGATATTGGTGTCCTGTTGCCCTGGAGGCACAGCAAGCAACATTGTTACATATTTAGCAAGGGGAAATGTTGCTCTTTCGGTACTGATGACAGCAGCAAGCACTTTTGCTGCAGCGTTCTTAACTCCTCTTCTGACATCCAAACTGGCGGGACAATATGTTGCAGTAGATCCAATGGGATTGTTTGTGTCAACATCTCAGGTTGTCCTAGCACCTGTGCTACTTGGTGCTCTACTTAATCAGTACTGCAACGGTTTAGTTCAGTTAGTTTCTCCCTTGATGCCATTCATTGCTGTGGCAACTGTAGCTGTTCTTTGTGGCAATGCTATCGCACAGAATGCTTCAGCCATTCTATCATCCGGTCTACAAGTGGTTATGTCTGTTTGTTGGTTGCATGCATCTGGCTTTTTCTTTGGTTATGTTCTTTCTAGAACGATTGGCATCGATATCTCTTCATCACGAACAATCTCTATTGAGGTTGGCATGCAGAAT-TCGGTGCTGGGTGTAGTTCTT-GCGAGCAAGCATT-TTGGAAATCCTCTCACAGC-AGTT-CCCTGT-GCTGTTTCTAGCGT-CTGCCATTC-GGTGTATGGT-AGCCT-TTTAGCT-GGAATCT-GGAGGTCTTTGCCCCCAAATGACAAGGGCC-AGTAATGCGTCCTT-GACCATGAGATGT-CAAGCT-GTT-AT-GCCACCAGCAGAAGCCCTCTTAGTCTGCCATCTGCTGCAATAAACACCATGCTTTCATGATTAGCGTCCAGCTTGAACCAGATAGGTGTTGTATTTATTTTTCAATCTGCTTCAGTAAGCACCATGTCTTCATGTTTAGCGTCCAGCTTGAACCAGATAGGTCTTCATTTATCTCGATCATTTTGCATTCAAATCTTGAACTTGGGCATATTCCTGCGCATGGTTGCCTTAAACAGAACTAGCAATAAACGCGCGCTATACTGTGCGCAGACCATGAATGCATGAAATGAAAAGAAAAAGAA]

[+] EMBL AK121764             [GCTCTCCAGTCTCCACCTCCTCTCGACGCTCGACAGGAAGACGCGCCGCCGCCGCCGCCCATCCGACGCCGCGACGCCGACGTGCCGTGCGTCCGTGACGCCGCCGCCGCCAATCCCTCCCGCCTTCGCGTCGTGCCGCCGCGCCGTCGGTGGTCGCCCGTCACCCGTCGCCGGCTCGCCGCGTCTTTTGGGTGGCGCCGTCGCGCCTCGTATCCAATCCACCCCGCGCCGCGCCGCGCCGTGCCGCCGCCCCCAAGAGGCCGAGACGCCCAAGTCCCAACTCCCAACGGCCAAAGTAATCGTTGAAGGTGACAGGTCAACATCCCACGTCATGCCTCTCCTCCGCCGGCCGCCGGCTGCTCCCCACCGCACCCCGATCCACCATGACAAGCGCCTTCACCTCTTCAGTACACACAACACCCGTCATAGAGCTACCGTCTCATCTCTCCCTGTCACCTGCCTTCGCATCCGATACAGCAGCAGCAACCCGGTTCGACACCTTTGTGGCATTCCGTCGAGCAGGTGCCATGCGGCTGCTGATCCGGCGCCCTCCAAGATACCAGGAGGTGGCAGCGGTGCATTGGAGGCTGGAGTTGTAGGTTGGCGGGATCTGCTTTTGCAGGTTGGCGAGGTGCTGTCGCTTGGGTTCCCAGTGTGGGTGGCGTCCGCTTGCGCCGTTGCGCTTTGGCGGCCACCGGCCTTCCTCTGGGTCAGTCCCATGGCCCAGATTGTCGGCATTTCCTTTACCATGCTGGGAATGGGAATGACATTGACATTAGATGACCTGAAAACTGCACTATTGATGCCCAAGGAGTTAGCATCTGGGTTTTTACTTCAATACTCGGTGATGCCACTGTCAGGATTTCTCATCAGCAAGCTATTAAACTTACCATCCTATTATGCTGCTGGATTGATATTGGTGTCCTGTTGCCCTGGAGGCACAGCAAGCAACATTGTTACATATTTAGCAAGGGGAAATGTTGCTCTTTCGGTACTGATGACAGCAGCAAGCACTTTTGCTGCAGCGTTCTTAACTCCTCTTCTGACATCCAAACTGGCGGGACAATATGTTGCAGTAGATCCAATGGGATTGTTTGTGTCAACATCTCAGGTTGTCCTAGCACCTGTGCTACTTGGTGCTCTACTTAATCAGTACTGCAACGGTTTAGTTCAGTTAGTTTCTCCCTTGATGCCATTCATTGCTGTGGCAACTGTAGCTGTTCTTTGTGGCAATGCTATCGCACAGAATGCTTCAGCCATTCTATCATCCGGTCTACAAGTGGTTATGTCTGTTTGTTGGTTGCATGCATCTGGCTTTTTCTTTGGTTATGTTCTTTCTAGAACGATTGGCATCGATATCTCTTCATCACGAACAATCTCTATTGAGGTTGGCATGCAGAAT TCGGTGCTGGGTGTAGTTCTT GCGAGCAAGCATT TTGGAAATCCTCTCACAGC AGTT CCCTGT GCTGTTTCTAGCGT CTGCCATTC GGTGTATGGT AGCCT TTTAGCT GGAATCT GGAGGTCTTTGCCCCCAAATGACAAGGGCC AGTAATGCGTCCTT GACCATGAGATGT CAAGCT GTT AT GCCACCAGCAGAAGCCCTCTTAGTCTGCCATCTGCTGCAATAAACACCATGCTTTCATGATTAGCGTCCAGCTTGAACCAGATAGGTGTTGTATTTATTTTTCAATCTGCTTCAGTAAGCACCATGTCTTCATGTTTAGCGTCCAGCTTGAACCAGATAGGTCTTCATTTATCTCGATCATTTTGCATTCAAATCTTGAACTTGGGCATATTCCTGCGCATGGTTGCCTTAAACAGAACTAGCAATAAACGCGCGCTATACTGTGCGCAGACCATGAATGCATGAAATGAAAAGAAAAAGAA]
[-] EMBL CB658411             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ACTCCTCTTCTGACATCCAAACTGGCGGGACAATATGTTGCAGTAGATCCAATGGGATTGTTTGTGTCAACATCTCAGGTTGTCCTAGCACCTGTGCTACTTGGTGCTCTACTTAATCAGTACTGCAACGGTTTAGTTCAGTTAGTTTCTCCCTTGATGCCATTCATTGCTGTGGCAACTGTAGCTGTTCTTTGTGGCAATGCTATCGCACAGAATGCTTCAGCCATTCTATCATCCGGTTTACAAGTGGTTATGTCTGTTTGTTGGTTGCATGCATCTGGCTTTTTCTTTGGTTATGTTCTTTCTAGAACGATTGGCATCGATATCTTTTCATCACGAACAATCTCTATTGAGGTTGGCATGCAGAAT TCGGTGCTGGGTGTAGTTCTT GCGAGCAAGCATT TTGGAAATCCTCTCACAGC AGTT CCCTGT GCTGTTTCTAGCGT CTGCCATTC GGTGTATGGT AGCCT TTTAGCT GGAATCT GGAGGTCTTTGCCCCCAAATGACAAGGGCC AGTAATGCGTCCTT GACCATGAGATGT CAAGCT GTT AT GCCACCAGCAGAAGCCCTCTTAGTTTGCCATTTGCTGCAATAAACACCATGCTTTCATGATTAGCGTCCAGCTTGAACCAGATAGGTGTTGTATTTATTTTTCAATCTGCTTCAGTAAGCACCATGTCTTCATGTTTAGCGTCCAGCTTGAACCAGATAGGTCTTCATTTATCTCGATCAT                                                                                                                         ]
[+] EMBL AU172499             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GATTGGCATCGATATCTCTTCATCACGAACAATCTCTATTGAGGTTGGCATGCAGAAT TCGGTGCTGGGTGTAGTTCTT GCGAGCAAGCATT TTGGAAATCCTCTCACAGC AGTT CCCTGT GCTGTTTCTAGCGT CTGCCATTC GGTGTATGGT AGCCT TTTAGCT GGAATCT GGAGGTCTTTGCCCCCAAATGACAAGGGCC AGTAATGCGTCCTT GACCATGAGATGT CAAGCT GTT AT GCCACCAGCAGAAGCCCTCTTAGTCTGCCATCTGCTGCAATAAACACCATGCTTTCATGATTAGCGTCCAGCTTGAACCAGATAGGTGTTGTATTTATTTTTCAATCTGCTTCAGTAAGCACCATGTCTTCATGTTTAGCGTCCAGCTTGAACCAGATAGGTCTTCATTTATCTCGATCATTTTGCATTCAAATCTTGAAaaa                                                                                                   ]
[+] EMBL BI806134             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCAGAATGTCGGTGCTGGGTGTAGTTCTTGGCGAGCAAGCATTGTTGGAAATCCTCTCACAGCAAGTTGCCCTGTGGCTGTTTCTAGCGTGCTGCCATTCAGGTGTATGGTGAGCCTGTTTAGCTGGGAATCTGGGAGGTCTTTGCCCCCAAATGACAAGGGCCAAGTAATGCGTCCTTGGACCATGAGATGTGCAAGCTGGTTGATGGCCACCAGCAGAAGCCCTCTTAGTCTGCCATCTGCTGCAATAAACACCATGCTTTCATGATTAGCGTCCAGCTTGAACCAGATAGGTGTTGTATTTATTTTTCAANCTGCTTCAGTAAGCACCATGTCTTCATGTTTAaaaaaa                                                                                                                                                              ]


>consensus_10254#0 GCTCTCCAGTCTCCACCTCCTCTCGACGCTCGACAGGAAGACGCGCCGCCGCCGCCGCCC ATCCGACGCCGCGACGCCGACGTGCCGTGCGTCCGTGACGCCGCCGCCGCCAATCCCTCC CGCCTTCGCGTCGTGCCGCCGCGCCGTCGGTGGTCGCCCGTCACCCGTCGCCGGCTCGCC GCGTCTTTTGGGTGGCGCCGTCGCGCCTCGTATCCAATCCACCCCGCGCCGCGCCGCGCC GTGCCGCCGCCCCCAAGAGGCCGAGACGCCCAAGTCCCAACTCCCAACGGCCAAAGTAAT CGTTGAAGGTGACAGGTCAACATCCCACGTCATGCCTCTCCTCCGCCGGCCGCCGGCTGC TCCCCACCGCACCCCGATCCACCATGACAAGCGCCTTCACCTCTTCAGTACACACAACAC CCGTCATAGAGCTACCGTCTCATCTCTCCCTGTCACCTGCCTTCGCATCCGATACAGCAG CAGCAACCCGGTTCGACACCTTTGTGGCATTCCGTCGAGCAGGTGCCATGCGGCTGCTGA TCCGGCGCCCTCCAAGATACCAGGAGGTGGCAGCGGTGCATTGGAGGCTGGAGTTGTAGG TTGGCGGGATCTGCTTTTGCAGGTTGGCGAGGTGCTGTCGCTTGGGTTCCCAGTGTGGGT GGCGTCCGCTTGCGCCGTTGCGCTTTGGCGGCCACCGGCCTTCCTCTGGGTCAGTCCCAT GGCCCAGATTGTCGGCATTTCCTTTACCATGCTGGGAATGGGAATGACATTGACATTAGA TGACCTGAAAACTGCACTATTGATGCCCAAGGAGTTAGCATCTGGGTTTTTACTTCAATA CTCGGTGATGCCACTGTCAGGATTTCTCATCAGCAAGCTATTAAACTTACCATCCTATTA TGCTGCTGGATTGATATTGGTGTCCTGTTGCCCTGGAGGCACAGCAAGCAACATTGTTAC ATATTTAGCAAGGGGAAATGTTGCTCTTTCGGTACTGATGACAGCAGCAAGCACTTTTGC TGCAGCGTTCTTAACTCCTCTTCTGACATCCAAACTGGCGGGACAATATGTTGCAGTAGA TCCAATGGGATTGTTTGTGTCAACATCTCAGGTTGTCCTAGCACCTGTGCTACTTGGTGC TCTACTTAATCAGTACTGCAACGGTTTAGTTCAGTTAGTTTCTCCCTTGATGCCATTCAT TGCTGTGGCAACTGTAGCTGTTCTTTGTGGCAATGCTATCGCACAGAATGCTTCAGCCAT TCTATCATCCGGTCTACAAGTGGTTATGTCTGTTTGTTGGTTGCATGCATCTGGCTTTTT CTTTGGTTATGTTCTTTCTAGAACGATTGGCATCGATATCTCTTCATCACGAACAATCTC TATTGAGGTTGGCATGCAGAATTCGGTGCTGGGTGTAGTTCTTGCGAGCAAGCATTTTGG AAATCCTCTCACAGCAGTTCCCTGTGCTGTTTCTAGCGTCTGCCATTCGGTGTATGGTAG CCTTTTAGCTGGAATCTGGAGGTCTTTGCCCCCAAATGACAAGGGCCAGTAATGCGTCCT TGACCATGAGATGTCAAGCTGTTATGCCACCAGCAGAAGCCCTCTTAGTCTGCCATCTGC TGCAATAAACACCATGCTTTCATGATTAGCGTCCAGCTTGAACCAGATAGGTGTTGTATT TATTTTTCAATCTGCTTCAGTAAGCACCATGTCTTCATGTTTAGCGTCCAGCTTGAACCA GATAGGTCTTCATTTATCTCGATCATTTTGCATTCAAATCTTGAACTTGGGCATATTCCT GCGCATGGTTGCCTTAAACAGAACTAGCAATAAACGCGCGCTATACTGTGCGCAGACCAT GAATGCATGAAATGAAAAGAAAAAGAA



consensusID : consensus_10254#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1401
fasta sequence
                              [CCAACTCCTCCCCATTCCCAGATCCCCGGTCGCTCACTCGCTCTCCAGTCTCCACCTCCTCTCGACGCTCGACAGGAAGACGCGCCGCCGCCGCCGCCCATCCGACGCCGCGACGCCGACGTGCCGTGCGTCCGTGACGCCGCCGCCGCCAATCCCTCCCGCCTTCGCGTCGTGCCGCCGCGCCGTCGGTGGTCGCCCGTCACCCGTCGCCGGCTCGCCGCGTCTTTTGGGTGGCGCCGTCGCGCCTCGTATCCAATCCACCCCGCGCCGCGCCGCGCCGTGCCGCCGCCCCCAAGAGGCCGAGACGCCCAAGTCCCAACTCCCAACGGCCAAAGTAATCG-TTGAAGGTGACAGGTCAACATCCCACGTCATGC-CTCTCCTCCGCCGGCCGCCGGCTGCTCCCCACCGCACCCCGATCCACCATGACAAGCGCCTTCACCTCTTCAGTACACACAACACCCGTCATAGAGCTACCGTCTCATCTCTCCCTGTCACCTGCCTTCGCATCCGATACAGCAGCAGCAACCCGGTTCGACACCTTTGTGGCATTCCGTCGAGCAGGTGCCATGCGGCTGCTGATCCGGCGCCCTCCAAGATACCAGGAGGTGGCAGCGGTGCATTGGAGGCTGGAGTTGTAGGTTGGCGGGATCTGCTTTTGCAGGTTGGCGAGGTGCTGTCGCTTGGGTTCCCAGTGTGGGTGGCGTCCGCTTGCGCCGTTGCGCTTTGGCGGCCACCGGCCTTCCTCTGGGTCAGTCCCATGGCCCAGATTGTCGGCATTTCCTTTACCATGCTGGGAATGGGAATGACATTGACATTAGATGACCTGAAAACTGCACTATTGATGCCCAAGGAGTTAGCATCTGGGTTTTTACTTCAATACTCGGTGATGCCACTGTCAGGATTTCTCATCAGCAAGCTATTAAACTTACCATCCTATTATGCTGCTGGATTGATATTGGTGTCCTGTTGCCCTGGAGGCACAGCAAGCAACATTGTTACATATTTAGCAAGGGGAAATGTTGCTCTTTCGGTACTGATGACAGCAGCAAGCACTTTTGCTGCAGCGTTCTTAACTCCTCTTCTGACATCCAAACTGGCGGGACAATATGTTGCAGTAGATCCAATGGGATTGTTTGTGTCAACATCTCAGGTGCTGGAAATCAATCTGATGTTATACTGCTGAATTTCCTTACTCCTAGCTAAGTTGGATATACATGAACGCAGGTTGTCCTAGCACCTGTGCTACTTGGTGCTCTACTTAATCAGTACTGCAACGGTTTAGTTCAGTTAGTTTCTCCCTTGATGCCATTCATTGCTGTGGCAACTGTAGCTGTTCTTTGTGGCAATGCTATCGCACAGAATGCTTCAGCCATTCTATCATCCGGTCTACAAGTGGTTATG]

[+] EMBL AK060452             [CCAACTCCTCCCCATTCCCAGATCCCCGGTCGCTCACTCGCTCTCCAGTCTCCACCTCCTCTCGACGCTCGACAGGAAGACGCGCCGCCGCCGCCGCCCATCCGACGCCGCGACGCCGACGTGCCGTGCGTCCGTGACGCCGCCGCCGCCAATCCCTCCCGCCTTCGCGTCGTGCCGCCGCGCCGTCGGTGGTCGCCCGTCACCCGTCGCCGGCTCGCCGCGTCTTTTGGGTGGCGCCGTCGCGCCTCGTATCCAATCCACCCCGCGCCGCGCCGCGCCGTGCCGCCGCCCCCAAGAGGCCGAGACGCCCAAGTCCCAACTCCCAACGGCCAAAGTAATCG TTGAAGGTGACAGGTCAACATCCCACGTCATGC CTCTCCTCCGCCGGCCGCCGGCTGCTCCCCACCGCACCCCGATCCACCATGACAAGCGCCTTCACCTCTTCAGTACACACAACACCCGTCATAGAGCTACCGTCTCATCTCTCCCTGTCACCTGCCTTCGCATCCGATACAGCAGCAGCAACCCGGTTCGACACCTTTGTGGCATTCCGTCGAGCAGGTGCCATGCGGCTGCTGATCCGGCGCCCTCCAAGATACCAGGAGGTGGCAGCGGTGCATTGGAGGCTGGAGTTGTAGGTTGGCGGGATCTGCTTTTGCAGGTTGGCGAGGTGCTGTCGCTTGGGTTCCCAGTGTGGGTGGCGTCCGCTTGCGCCGTTGCGCTTTGGCGGCCACCGGCCTTCCTCTGGGTCAGTCCCATGGCCCAGATTGTCGGCATTTCCTTTACCATGCTGGGAATGGGAATGACATTGACATTAGATGACCTGAAAACTGCACTATTGATGCCCAAGGAGTTAGCATCTGGGTTTTTACTTCAATACTCGGTGATGCCACTGTCAGGATTTCTCATCAGCAAGCTATTAAACTTACCATCCTATTATGCTGCTGGATTGATATTGGTGTCCTGTTGCCCTGGAGGCACAGCAAGCAACATTGTTACATATTTAGCAAGGGGAAATGTTGCTCTTTCGGTACTGATGACAGCAGCAAGCACTTTTGCTGCAGCGTTCTTAACTCCTCTTCTGACATCCAAACTGGCGGGACAATATGTTGCAGTAGATCCAATGGGATTGTTTGTGTCAACATCTCAGGTGCTGGAAATCAATCTGATGTTATACTGCTGAATTTCCTTACTCCTAGCTAAGTTGGATATACATGAACGCAGGTTGTCCTAGCACCTGTGCTACTTGGTGCTCTACTTAATCAGTACTGCAACGGTTTAGTTCAGTTAGTTTCTCCCTTGATGCCATTCATTGCTGTGGCAACTGTAGCTGTTCTTTGTGGCAATGCTATCGCACAGAATGCTTCAGCCATTCTATCATCCGGTCTACAAGTGGTTATG]
[+] EMBL C72429               [                                           TCCAGTCTCCACCTCCTCTCGACGCTCGACAGGAAGACGCGCCGACGCCGCCGCCCATCCGACGCCGCGACGCCGACGTGCCGTGCGTCCGTGACGACGCCGCCGCCAATCCCTCCCGCCTTCGCGTCGTGCCGCCGCGCCGTCGGTGGTCGCCCGTCACCCGTCGCCGGCTCGCCGCGTCTTTTGGGTGGCGCCGTCGCGCTTCGTATCCAATCCACCCCGCGCCG GCCG GCCGTGCCGCCGCCCCCAAGAGGCCGAGACGGCCAAGTNCCAACTTCCAACGGCCAAAGTAATCGTTTGAAGGTGACAGGTCAACATTCCACGTCATGCTCT TCTTCGGCCGGCCGCCGCTTGTTTCCCACCG AACCCGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]


>consensus_10254#1 CCAACTCCTCCCCATTCCCAGATCCCCGGTCGCTCACTCGCTCTCCAGTCTCCACCTCCT CTCGACGCTCGACAGGAAGACGCGCCGCCGCCGCCGCCCATCCGACGCCGCGACGCCGAC GTGCCGTGCGTCCGTGACGCCGCCGCCGCCAATCCCTCCCGCCTTCGCGTCGTGCCGCCG CGCCGTCGGTGGTCGCCCGTCACCCGTCGCCGGCTCGCCGCGTCTTTTGGGTGGCGCCGT CGCGCCTCGTATCCAATCCACCCCGCGCCGCGCCGCGCCGTGCCGCCGCCCCCAAGAGGC CGAGACGCCCAAGTCCCAACTCCCAACGGCCAAAGTAATCGTTGAAGGTGACAGGTCAAC ATCCCACGTCATGCCTCTCCTCCGCCGGCCGCCGGCTGCTCCCCACCGCACCCCGATCCA CCATGACAAGCGCCTTCACCTCTTCAGTACACACAACACCCGTCATAGAGCTACCGTCTC ATCTCTCCCTGTCACCTGCCTTCGCATCCGATACAGCAGCAGCAACCCGGTTCGACACCT TTGTGGCATTCCGTCGAGCAGGTGCCATGCGGCTGCTGATCCGGCGCCCTCCAAGATACC AGGAGGTGGCAGCGGTGCATTGGAGGCTGGAGTTGTAGGTTGGCGGGATCTGCTTTTGCA GGTTGGCGAGGTGCTGTCGCTTGGGTTCCCAGTGTGGGTGGCGTCCGCTTGCGCCGTTGC GCTTTGGCGGCCACCGGCCTTCCTCTGGGTCAGTCCCATGGCCCAGATTGTCGGCATTTC CTTTACCATGCTGGGAATGGGAATGACATTGACATTAGATGACCTGAAAACTGCACTATT GATGCCCAAGGAGTTAGCATCTGGGTTTTTACTTCAATACTCGGTGATGCCACTGTCAGG ATTTCTCATCAGCAAGCTATTAAACTTACCATCCTATTATGCTGCTGGATTGATATTGGT GTCCTGTTGCCCTGGAGGCACAGCAAGCAACATTGTTACATATTTAGCAAGGGGAAATGT TGCTCTTTCGGTACTGATGACAGCAGCAAGCACTTTTGCTGCAGCGTTCTTAACTCCTCT TCTGACATCCAAACTGGCGGGACAATATGTTGCAGTAGATCCAATGGGATTGTTTGTGTC AACATCTCAGGTGCTGGAAATCAATCTGATGTTATACTGCTGAATTTCCTTACTCCTAGC TAAGTTGGATATACATGAACGCAGGTTGTCCTAGCACCTGTGCTACTTGGTGCTCTACTT AATCAGTACTGCAACGGTTTAGTTCAGTTAGTTTCTCCCTTGATGCCATTCATTGCTGTG GCAACTGTAGCTGTTCTTTGTGGCAATGCTATCGCACAGAATGCTTCAGCCATTCTATCA TCCGGTCTACAAGTGGTTATG



consensusID : consensus_10254#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 776
fasta sequence
                              [CCAAGTCCCAACTCCCAACGGCCAAAGGTCAACATCCCACGTCATGCCTCTCCTCCGCCGGCCGCCGGCTGCTCCCCACCGCACCCCGATCCACCATGACAAGCGCCTTCACCTCTTCAGTACACACAACACCCGTCATAGAGCTACCGTCTCATCTCTCCCTGTCACCTGCCTTCGCATCCGATACAGCAGCAGCAACCCGGTTCGACACCTTTGTGGCATTCCGTCGAGCAGGTGCCATGCGGCTGCTGATCCGGCGCCCTCCAAGATACCAGGAGGTGGCAGCGGTGCATTGGAGGCTGGAGTTGTAGGTTGGCGGGATCTGCTTTTGCAGGTTGGCGAGGTGCTGTCGCTTGGGTTCCCAGTGTGGGTGGCGTCCGCTTGCGCCGTTGCGCTTTGGCGGCCACCGGCCTTCCTCTGGGTCAGTCCCATGGCCCAGATTGTCGGCATTTCCTTTACCATGCTGGGAATGGGAATGACATTGACATTAGATGACCTGAAAACTGCACTATTGATGCCCAAGGAGTTAGCATCTGGGTTTTTACTTCAATACTCGGTGATGCCACTGTCAGGATTTCTCATCAGCAAGCTATTAAACTTACCATCCTATTATGCTGCTGGATTGATATTGGTGTCCTGTTGCCCTGGAGGCACAGCAAGCAACATTGTTACATATTTAGCAAGGGGAAATGTTGCTCTTTCGGTACTGATGACAGCAGCAAGCACTTTTGCTGCAGCGTTCTTAACTCCTCTTCTGACATCCAAACTGGCGGGAC]

[+] EMBL CB658410             [CCAAGTCCCAACTCCCAACGGCCAAAGGTCAACATCCCACGTCATGCCTCTCCTCCGCCGGCCGCCGGCTGCTCCCCACCGCACCCCGATCCACCATGACAAGCGCCTTCACCTCTTCAGTACACACAACACCCGTCATAGAGCTACCGTCTCATCTCTCCCTGTCACCTGCCTTCGCATCCGATACAGCAGCAGCAACCCGGTTCGACACCTTTGTGGCATTCCGTCGAGCAGGTGCCATGCGGCTGCTGATCCGGCGCCCTCCAAGATACCAGGAGGTGGCAGCGGTGCATTGGAGGCTGGAGTTGTAGGTTGGCGGGATCTGCTTTTGCAGGTTGGCGAGGTGCTGTCGCTTGGGTTCCCAGTGTGGGTGGCGTCCGCTTGCGCCGTTGCGCTTTGGCGGCCACCGGCCTTCCTCTGGGTCAGTCCCATGGCCCAGATTGTCGGCATTTCCTTTACCATGCTGGGAATGGGAATGACATTGACATTAGATGACCTGAAAACTGCACTATTGATGCCCAAGGAGTTAGCATCTGGGTTTTTACTTCAATACTCGGTGATGCCACTGTCAGGATTTCTCATCAGCAAGCTATTAAACTTACCATCCTATTATGCTGCTGGATTGATATTGGTGTCCTGTTGCCCTGGAGGCACAGCAAGCAACATTGTTACATATTTAGCAAGGGGAAATGTTGCTCTTTCGGTACTGATGACAGCAGCAAGCACTTTTGCTGCAGCGTTCTTAACTCCTCTTCTGACATCCAAACTGGCGGGAC]


>consensus_10254#2 CCAAGTCCCAACTCCCAACGGCCAAAGGTCAACATCCCACGTCATGCCTCTCCTCCGCCG GCCGCCGGCTGCTCCCCACCGCACCCCGATCCACCATGACAAGCGCCTTCACCTCTTCAG TACACACAACACCCGTCATAGAGCTACCGTCTCATCTCTCCCTGTCACCTGCCTTCGCAT CCGATACAGCAGCAGCAACCCGGTTCGACACCTTTGTGGCATTCCGTCGAGCAGGTGCCA TGCGGCTGCTGATCCGGCGCCCTCCAAGATACCAGGAGGTGGCAGCGGTGCATTGGAGGC TGGAGTTGTAGGTTGGCGGGATCTGCTTTTGCAGGTTGGCGAGGTGCTGTCGCTTGGGTT CCCAGTGTGGGTGGCGTCCGCTTGCGCCGTTGCGCTTTGGCGGCCACCGGCCTTCCTCTG GGTCAGTCCCATGGCCCAGATTGTCGGCATTTCCTTTACCATGCTGGGAATGGGAATGAC ATTGACATTAGATGACCTGAAAACTGCACTATTGATGCCCAAGGAGTTAGCATCTGGGTT TTTACTTCAATACTCGGTGATGCCACTGTCAGGATTTCTCATCAGCAAGCTATTAAACTT ACCATCCTATTATGCTGCTGGATTGATATTGGTGTCCTGTTGCCCTGGAGGCACAGCAAG CAACATTGTTACATATTTAGCAAGGGGAAATGTTGCTCTTTCGGTACTGATGACAGCAGC AAGCACTTTTGCTGCAGCGTTCTTAACTCCTCTTCTGACATCCAAACTGGCGGGAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10254#1      CCAACTCCTCCCCATTCCCAGATCCCCGGTCGCTCACTCGCTCTCCAGTCTCCACCTCCT 60
consensus_10254#2      ------------------------------------------------------------
consensus_10254#0      ---------------------------------------GCTCTCCAGTCTCCACCTCCT 21
                                                                                   

consensus_10254#1      CTCGACGCTCGACAGGAAGACGCGCCGCCGCCGCCGCCCATCCGACGCCGCGACGCCGAC 120
consensus_10254#2      ------------------------------------------------------------
consensus_10254#0      CTCGACGCTCGACAGGAAGACGCGCCGCCGCCGCCGCCCATCCGACGCCGCGACGCCGAC 81
                                                                                   

consensus_10254#1      GTGCCGTGCGTCCGTGACGCCGCCGCCGCCAATCCCTCCCGCCTTCGCGTCGTGCCGCCG 180
consensus_10254#2      ------------------------------------------------------------
consensus_10254#0      GTGCCGTGCGTCCGTGACGCCGCCGCCGCCAATCCCTCCCGCCTTCGCGTCGTGCCGCCG 141
                                                                                   

consensus_10254#1      CGCCGTCGGTGGTCGCCCGTCACCCGTCGCCGGCTCGCCGCGTCTTTTGGGTGGCGCCGT 240
consensus_10254#2      ------------------------------------------------------------
consensus_10254#0      CGCCGTCGGTGGTCGCCCGTCACCCGTCGCCGGCTCGCCGCGTCTTTTGGGTGGCGCCGT 201
                                                                                   

consensus_10254#1      CGCGCCTCGTATCCAATCCACCCCGCGCCGCGCCGCGCCGTGCCGCCGCCCCCAAGAGGC 300
consensus_10254#2      ------------------------------------------------------------
consensus_10254#0      CGCGCCTCGTATCCAATCCACCCCGCGCCGCGCCGCGCCGTGCCGCCGCCCCCAAGAGGC 261
                                                                                   

consensus_10254#1      CGAGACGCCCAAGTCCCAACTCCCAACGGCCAAAGTAATCGTTGAAGGTGACAGGTCAAC 360
consensus_10254#2      --------CCAAGTCCCAACTCCCAACGGCCAAAG-------------------GTCAAC 33
consensus_10254#0      CGAGACGCCCAAGTCCCAACTCCCAACGGCCAAAGTAATCGTTGAAGGTGACAGGTCAAC 321
                               ***************************                   ******

consensus_10254#1      ATCCCACGTCATGCCTCTCCTCCGCCGGCCGCCGGCTGCTCCCCACCGCACCCCGATCCA 420
consensus_10254#2      ATCCCACGTCATGCCTCTCCTCCGCCGGCCGCCGGCTGCTCCCCACCGCACCCCGATCCA 93
consensus_10254#0      ATCCCACGTCATGCCTCTCCTCCGCCGGCCGCCGGCTGCTCCCCACCGCACCCCGATCCA 381
                       ************************************************************

consensus_10254#1      CCATGACAAGCGCCTTCACCTCTTCAGTACACACAACACCCGTCATAGAGCTACCGTCTC 480
consensus_10254#2      CCATGACAAGCGCCTTCACCTCTTCAGTACACACAACACCCGTCATAGAGCTACCGTCTC 153
consensus_10254#0      CCATGACAAGCGCCTTCACCTCTTCAGTACACACAACACCCGTCATAGAGCTACCGTCTC 441
                       ************************************************************

consensus_10254#1      ATCTCTCCCTGTCACCTGCCTTCGCATCCGATACAGCAGCAGCAACCCGGTTCGACACCT 540
consensus_10254#2      ATCTCTCCCTGTCACCTGCCTTCGCATCCGATACAGCAGCAGCAACCCGGTTCGACACCT 213
consensus_10254#0      ATCTCTCCCTGTCACCTGCCTTCGCATCCGATACAGCAGCAGCAACCCGGTTCGACACCT 501
                       ************************************************************

consensus_10254#1      TTGTGGCATTCCGTCGAGCAGGTGCCATGCGGCTGCTGATCCGGCGCCCTCCAAGATACC 600
consensus_10254#2      TTGTGGCATTCCGTCGAGCAGGTGCCATGCGGCTGCTGATCCGGCGCCCTCCAAGATACC 273
consensus_10254#0      TTGTGGCATTCCGTCGAGCAGGTGCCATGCGGCTGCTGATCCGGCGCCCTCCAAGATACC 561
                       ************************************************************

consensus_10254#1      AGGAGGTGGCAGCGGTGCATTGGAGGCTGGAGTTGTAGGTTGGCGGGATCTGCTTTTGCA 660
consensus_10254#2      AGGAGGTGGCAGCGGTGCATTGGAGGCTGGAGTTGTAGGTTGGCGGGATCTGCTTTTGCA 333
consensus_10254#0      AGGAGGTGGCAGCGGTGCATTGGAGGCTGGAGTTGTAGGTTGGCGGGATCTGCTTTTGCA 621
                       ************************************************************

consensus_10254#1      GGTTGGCGAGGTGCTGTCGCTTGGGTTCCCAGTGTGGGTGGCGTCCGCTTGCGCCGTTGC 720
consensus_10254#2      GGTTGGCGAGGTGCTGTCGCTTGGGTTCCCAGTGTGGGTGGCGTCCGCTTGCGCCGTTGC 393
consensus_10254#0      GGTTGGCGAGGTGCTGTCGCTTGGGTTCCCAGTGTGGGTGGCGTCCGCTTGCGCCGTTGC 681
                       ************************************************************

consensus_10254#1      GCTTTGGCGGCCACCGGCCTTCCTCTGGGTCAGTCCCATGGCCCAGATTGTCGGCATTTC 780
consensus_10254#2      GCTTTGGCGGCCACCGGCCTTCCTCTGGGTCAGTCCCATGGCCCAGATTGTCGGCATTTC 453
consensus_10254#0      GCTTTGGCGGCCACCGGCCTTCCTCTGGGTCAGTCCCATGGCCCAGATTGTCGGCATTTC 741
                       ************************************************************

consensus_10254#1      CTTTACCATGCTGGGAATGGGAATGACATTGACATTAGATGACCTGAAAACTGCACTATT 840
consensus_10254#2      CTTTACCATGCTGGGAATGGGAATGACATTGACATTAGATGACCTGAAAACTGCACTATT 513
consensus_10254#0      CTTTACCATGCTGGGAATGGGAATGACATTGACATTAGATGACCTGAAAACTGCACTATT 801
                       ************************************************************

consensus_10254#1      GATGCCCAAGGAGTTAGCATCTGGGTTTTTACTTCAATACTCGGTGATGCCACTGTCAGG 900
consensus_10254#2      GATGCCCAAGGAGTTAGCATCTGGGTTTTTACTTCAATACTCGGTGATGCCACTGTCAGG 573
consensus_10254#0      GATGCCCAAGGAGTTAGCATCTGGGTTTTTACTTCAATACTCGGTGATGCCACTGTCAGG 861
                       ************************************************************

consensus_10254#1      ATTTCTCATCAGCAAGCTATTAAACTTACCATCCTATTATGCTGCTGGATTGATATTGGT 960
consensus_10254#2      ATTTCTCATCAGCAAGCTATTAAACTTACCATCCTATTATGCTGCTGGATTGATATTGGT 633
consensus_10254#0      ATTTCTCATCAGCAAGCTATTAAACTTACCATCCTATTATGCTGCTGGATTGATATTGGT 921
                       ************************************************************

consensus_10254#1      GTCCTGTTGCCCTGGAGGCACAGCAAGCAACATTGTTACATATTTAGCAAGGGGAAATGT 1020
consensus_10254#2      GTCCTGTTGCCCTGGAGGCACAGCAAGCAACATTGTTACATATTTAGCAAGGGGAAATGT 693
consensus_10254#0      GTCCTGTTGCCCTGGAGGCACAGCAAGCAACATTGTTACATATTTAGCAAGGGGAAATGT 981
                       ************************************************************

consensus_10254#1      TGCTCTTTCGGTACTGATGACAGCAGCAAGCACTTTTGCTGCAGCGTTCTTAACTCCTCT 1080
consensus_10254#2      TGCTCTTTCGGTACTGATGACAGCAGCAAGCACTTTTGCTGCAGCGTTCTTAACTCCTCT 753
consensus_10254#0      TGCTCTTTCGGTACTGATGACAGCAGCAAGCACTTTTGCTGCAGCGTTCTTAACTCCTCT 1041
                       ************************************************************

consensus_10254#1      TCTGACATCCAAACTGGCGGGACAATATGTTGCAGTAGATCCAATGGGATTGTTTGTGTC 1140
consensus_10254#2      TCTGACATCCAAACTGGCGGGAC------------------------------------- 776
consensus_10254#0      TCTGACATCCAAACTGGCGGGACAATATGTTGCAGTAGATCCAATGGGATTGTTTGTGTC 1101
                       ***********************                                     

consensus_10254#1      AACATCTCAGGTGCTGGAAATCAATCTGATGTTATACTGCTGAATTTCCTTACTCCTAGC 1200
consensus_10254#2      ------------------------------------------------------------
consensus_10254#0      AACATCTCAGG------------------------------------------------- 1112
                                                                                   

consensus_10254#1      TAAGTTGGATATACATGAACGCAGGTTGTCCTAGCACCTGTGCTACTTGGTGCTCTACTT 1260
consensus_10254#2      ------------------------------------------------------------
consensus_10254#0      -------------------------TTGTCCTAGCACCTGTGCTACTTGGTGCTCTACTT 1147
                                                                                   

consensus_10254#1      AATCAGTACTGCAACGGTTTAGTTCAGTTAGTTTCTCCCTTGATGCCATTCATTGCTGTG 1320
consensus_10254#2      ------------------------------------------------------------
consensus_10254#0      AATCAGTACTGCAACGGTTTAGTTCAGTTAGTTTCTCCCTTGATGCCATTCATTGCTGTG 1207
                                                                                   

consensus_10254#1      GCAACTGTAGCTGTTCTTTGTGGCAATGCTATCGCACAGAATGCTTCAGCCATTCTATCA 1380
consensus_10254#2      ------------------------------------------------------------
consensus_10254#0      GCAACTGTAGCTGTTCTTTGTGGCAATGCTATCGCACAGAATGCTTCAGCCATTCTATCA 1267
                                                                                   

consensus_10254#1      TCCGGTCTACAAGTGGTTATG--------------------------------------- 1401
consensus_10254#2      ------------------------------------------------------------
consensus_10254#0      TCCGGTCTACAAGTGGTTATGTCTGTTTGTTGGTTGCATGCATCTGGCTTTTTCTTTGGT 1327
                                                                                   

consensus_10254#1      ------------------------------------------------------------
consensus_10254#2      ------------------------------------------------------------
consensus_10254#0      TATGTTCTTTCTAGAACGATTGGCATCGATATCTCTTCATCACGAACAATCTCTATTGAG 1387
                                                                                   

consensus_10254#1      ------------------------------------------------------------
consensus_10254#2      ------------------------------------------------------------
consensus_10254#0      GTTGGCATGCAGAATTCGGTGCTGGGTGTAGTTCTTGCGAGCAAGCATTTTGGAAATCCT 1447
                                                                                   

consensus_10254#1      ------------------------------------------------------------
consensus_10254#2      ------------------------------------------------------------
consensus_10254#0      CTCACAGCAGTTCCCTGTGCTGTTTCTAGCGTCTGCCATTCGGTGTATGGTAGCCTTTTA 1507
                                                                                   

consensus_10254#1      ------------------------------------------------------------
consensus_10254#2      ------------------------------------------------------------
consensus_10254#0      GCTGGAATCTGGAGGTCTTTGCCCCCAAATGACAAGGGCCAGTAATGCGTCCTTGACCAT 1567
                                                                                   

consensus_10254#1      ------------------------------------------------------------
consensus_10254#2      ------------------------------------------------------------
consensus_10254#0      GAGATGTCAAGCTGTTATGCCACCAGCAGAAGCCCTCTTAGTCTGCCATCTGCTGCAATA 1627
                                                                                   

consensus_10254#1      ------------------------------------------------------------
consensus_10254#2      ------------------------------------------------------------
consensus_10254#0      AACACCATGCTTTCATGATTAGCGTCCAGCTTGAACCAGATAGGTGTTGTATTTATTTTT 1687
                                                                                   

consensus_10254#1      ------------------------------------------------------------
consensus_10254#2      ------------------------------------------------------------
consensus_10254#0      CAATCTGCTTCAGTAAGCACCATGTCTTCATGTTTAGCGTCCAGCTTGAACCAGATAGGT 1747
                                                                                   

consensus_10254#1      ------------------------------------------------------------
consensus_10254#2      ------------------------------------------------------------
consensus_10254#0      CTTCATTTATCTCGATCATTTTGCATTCAAATCTTGAACTTGGGCATATTCCTGCGCATG 1807
                                                                                   

consensus_10254#1      ------------------------------------------------------------
consensus_10254#2      ------------------------------------------------------------
consensus_10254#0      GTTGCCTTAAACAGAACTAGCAATAAACGCGCGCTATACTGTGCGCAGACCATGAATGCA 1867
                                                                                   

consensus_10254#1      --------------------
consensus_10254#2      --------------------
consensus_10254#0      TGAAATGAAAAGAAAAAGAA 1887
                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)