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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10257#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1236 fasta sequence
[AGCAGGAATCCAATCCGAATCCACCATCAGCTCTCCTATCACATTCCCTGCATCCGTCTTCGAGCGAGCTATGCGGCAGGAGGCCACCTGCAGCCTTGTGCTGACCCAGGACGCCCAACACCGGAAGAACCAGCCACCGCTGGCTGAGGAGGACGACGATAGGGATCATACCGACGATGCCATGCCGCCGCCCTGCTCGATCTTGCTCCGCCAGGAGG-AGGGCGAGGCGACGGCGGCGGCGGCGGGGGAANGGCTGCTGGTGCCGCCGCTCAACTTCGCCATGGTGGATCATGGCGTATACCGCTCCGGCTTCCCCGACATCTCCAACCTGCCGTTCGTCGAGTCCCTTCGCCTCCGCTCCGTCCTGTGCCTCTGCCCGGAGCCGTACCCGGAGGCGAACCAGGAGTTCCTCCGCGCCCACGGGATCAGGCTGTTCCAGTTCGGAATCGACGGTTCCAAGGAGCCCTTTGTGAACATACCTGAAGATAGAATCCGTGAGGCTCTAAAAGTTGTGCTAGATGTGGCAAATCACCCGGTGCTTATTCACTGCAAGCGTGGAAAGCATCGAACTGGCTGTGTGGTTGGTTGCTTGAGGAAATTGCAACGCTGGTGCCTAACTTCAATATTTGATGAATATCAGCGCTTTGCTGCTGCCAAAG-CAAGAGTATCTGACCT-AAGGTTTATGGAACTATTTGATATCTCTAGTTTAAAGCATTTACCAGCATCATTCTCATGTTGAGAAAGCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTGGCAATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGTAAGAAAACTATCAGTGATACCTTTTAATTGTGTTTTCATCATTATACTACTTCCCAGTACATGTAGTCGCAAGTTTAACCTTATCATTTTTGGAGAATAGGTCCCGAGTTGTAGTTGATGTTAAAGGGCATAGAAACCGGATCGGTTGCCAATGCAGTTCACTGTATTAGTTCAGTGTTTTTCAAGCGAATAAGAGGGATGCATCGGGAGCTATACCATTGTTGTTTCTGCGTTAGCAGTACCAGTATGTATTTTTTTGGCAGTGCATAATTTTTTATATGTTGTAATTATGCTCAATCTGTATATCGAATAGAATCTCAAATTGCAAGGAAAAACCATCATGGCCCTTCAAGCCCTTGACTGAATGTGTGTAATTGTTCAGTGTTTTAAAGAAGATTA]
[+] EMBL AU078023 [AGCAGGAATCCAATCCGAATCCACCATCAGCTCTCCTATCACATTCCCTGCATCCGTCTTCGAGCGAGCTATGCGGCAGGAGGCCACCTGCAGCCTTGTGCTGACCCAGGACGCCCAACACCGGAAGAACCAGCCACCGCTGGCTGAGGAGGACGACGATAGGGATCATACCGACGATGCCATGCCGCCGCCCTGCTCGATCTTGCTCCGCCAGGAGG AGGGCGAGGCGACGGCGGCGGCGGCGGGGGAANGGCTGCTGGTGCCGCCGCTCAACTTCGCCATGGTGGATCATNGCGTATACCGCTCCGGCTTCCCCGACATCTCCAACCTGCCGTTCGTCGAGTCCCTTCGCCTCCGCTC ]
[+] EMBL OSS13304A [ GTCTTCGAGCGAGCTATGCGGCAGGAGGCCACCTGCAGCCTTGTGCTGACCCAGGACGCCCAACACCGGAAGAACCAGCCACCGCTGGCTGAGGAGGACGACGATAGGGATCATACCGACGATGCCATGCCGCCGCCCTGCTCGATCTTGCTCCGCCAGGAGGAAGGGCGAGGCGACGGAGGCGGCGGCGGGGNAGGGGCTGCTGGTGCCGCCGNTCAACTTCGCCATGGTGGATCATGG ]
[+] EMBL AK121831 [ GCCGCCGCTCAACTTCGCCATGGTGGATCATGGCGTATACCGCTCCGGCTTCCCCGACATCTCCAACCTGCCGTTCGTCGAGTCCCTTCGCCTCCGCTCCGTCCTGTGCCTCTGCCCGGAGCCGTACCCGGAGGCGAACCAGGAGTTCCTCCGCGCCCACGGGATCAGGCTGTTCCAGTTCGGAATCGACGGTTCCAAGGAGCCCTTTGTGAACATACCTGAAGATAGAATCCGTGAGGCTCTAAAAGTTGTGCTAGATGTGGCAAATCACCCGGTGCTTATTCACTGCAAGCGTGGAAAGCATCGAACTGGCTGTGTGGTTGGTTGCTTGAGGAAATTGCAACGCTGGTGCCTAACTTCAATATTTGATGAATATCAGCGCTTTGCTGCTGCCAAAG CAAGAGTATCTGACCT AAGGTTTATGGAACTATTTGATATCTCTAGTTTAAAGCATTTACCAGCATCATTCTCATGTTGAGAAAGCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTGGCAATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGTAAGAAAACTATCAGTGATACCTTTTAATTGTGTTTTCATCATTATACTACTTCCCAGTACATGTAGTCGCAAGTTTAACCTTATCATTTTTGGAGAATAGGTCCCGAGTTGTAGTTGATGTTAAAGGGCATAGAAACCGG TCGGTTGCCAATGCAGTTCACTGTATTAGTTCAGTGTTTTTCAAGCGAATAAGAGGGATGCATCGGGAGCTATACCATTGTTGTTTCTGCGTTAGCAGTACCAGTATGTATTTTTTTGGCAGTGCATAATTTTTTATATGTTGTAATTATGCTCAATCTGTATATCGAATAGAATCTCAAATTGCAAGGAAAAACCATCATGGCCCTTCAAGCCCTTGACTGAATGTGTGTAATTGTTCAGTGTTTTAAAGAA ]
[+] EMBL BP184694 [ GCCGCCGCTCAACTTCGCCATGGTGGATCATGGCGTATACCGCTCCGGCTTCCCCGACATCTCCAACCTGCCGTTCGTCGAGTCCCTTCGCCTCCGCTCCGTCCTGTGCCTCTGCCCGGAGCCGTACCCGGAGGCGAACCAGGAGTTCCTCCGCGCCCACGGGATCAGGCTGTTCCAGTTCGGAATCGACGGTTCCAAGGAGCCCTTTGTGAACATACCTGAAGATAGAATCCGTGAGGCTCTAAAAGTTGTGCTAGATGTGGCAAATCACCCGGTGCTTATTCACTGCAAGCGTGGAAAGCATCGAACTGGCTGTGTGGTTGGTTGCTTGAGGAAATTGCAACGCTGGTGCCTAACTTC ATATTTGATGAATATCAGCGCTTTGCT ]
[+] EMBL CA767345 [ CTAACTTCAATATTTGATGAATATAAGCGCTTTGCTGCTGCCAAAG CAAGAGTATCTGACCT AAGGTTTATGGAACTATTTGATATCTCTAGTTTAAAGCATTTACCAGCATCATTCTCATGTTGAGAAAGCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTGGCAATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGTAAGAAAACTATCAGTGATACCTTTTAATTGTGTTTTCATCATTATACTACTTCCCAGTACATGTAGTCGCAAGTTTAACCTTACCATTTTTGGAGAATAGGTCCCGAGTTGTAGTTGATGTTAAAGGGCATAGAAACCGGATCGGTTGCCAATGCAGTTCACTGTATGAGTCCAGTGTTTTTCAAGCGAATAAGAGGGATGCATCGGGAGCTATACCATTGTTGTTTCTGCGTTAGCAGTACCAGTATGTATTTTTTTGGCAGTGCATAATTTTTTATATGTTGTAATCATGCTCAATCTGTATATCGAATAGAATCTCAAATTGCAAGGAAAAACCATCATGGCCCTTCAAGCCCTTGACTGAATGTGTGTAATTGGTCAGTGNTTTAAAGAAGATTA]
[+] EMBL AU078024 [ CAANATTTGATGAATATCAGCGCTTTGNTGCTGCCAAAGCCAAGNGTATCTGACCTAAAGGTTTATGGANCTATTTGATATCTCTAGTTTAAAGCATTTACCAGCATCATTCTCATGTTGAGAAANCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTGGCAATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGTAAGAAAACTATCAGTGATACCTTTTAATTGTGTTTTCATCATTATACTACTTCCCAGTACATGTAGTCGCAAGTTTAACCTTATCATTTTTGGAGAATAGGTCCCGAGTTGTAGTTGATGTTAAAGGGCATAGAAACCGGATCGGTTGCCAATGCAGTTCACTGTATTAGTTCAGTGTTTTTCAANCGAATAAGAGGGATGCATCGGGAGCTATACCATTGTTGTTTCTGCGTTAGCAGTACCAGTATGTATTTTTTTGGCAGTGCATAATTTTTTATATGTTGTAATTATGCTCAATCTGTATATCGAATAGAATCTCAAATTGCAAGG ]
consensusID : consensus_10257#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence
[AGTTTGTGCTAGATGTGCAATCACCCGGTGCTTATTCACATGCAAGCGTGGAAAGCATCGAACTGGCTGTGTGTTGGTTGCTTGAGGAAATTGCAACGCTGGTGCCTAACTTCAATATTTGATGAATATCAGCGCTTTGCTGCTGCCAAAGCAAGAGTATCTGACCTAAGGTTTATGGAACTATTTGATATCTCTGAGTTTAAAGCATTTACCAGCATCATTCTCATGTTGAGAAAGCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTGGCNATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGTCCCGAGTTGTAGTTGATGTTAAAGGGCATAGAAACCGGATCGGTTGCCAATGCAGTTCACTGTATGAGTTCAGTGTTTTTCAAGCGAATAAGAGGGATGCATCGGGAGCTATACCACTTGTTGTTTCTGCGTTACAGTACCAGTATGTATTTTTTTGCAGTGCATAATTTTTTATATGTTGTAATTATGCTCAATCTGTATATCGAATAGAATCTCAAATTGCAAGGAAAAACCATCATGGCCCTTCAAGCCCTTGACTGAAA]
[+] EMBL BQ907652 [AGTTTGTGCTAGATGTGCAATCACCCGGTGCTTATTCACATGCAAGCGTGGAAAGCATCGAACTGGCTGTGTGTTGGTTGCTTGAGGAAATTGCAACGCTGGTGCCTAACTTCAATATTTGATGAATATCAGCGCTTTGCTGCTGCCAAAGCAAGAGTATCTGACCTAAGGTTTATGGAACTATTTGATATCTCTGAGTTTAAAGCATTTACCAGCATCATTCTCATGTTGAGAAAGCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTGGCNATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGTCCCGAGTTGTAGTTGATGTTAAAGGGCATAGAAACCGGATCGGTTGCCAATGCAGTTCACTGTATGAGTTCAGTGTTTTTCAAGCGAATAAGAGGGATGCATCGGGAGCTATACCACTTGTTGTTTCTGCGTTACAGTACCAGTATGTATTTTTTTGCAGTGCATAATTTTTTATATGTTGTAATTATGCTCAATCTGTATATCGAATAGAATCTCAAATTGCAAGGAAAAACCATCATGGCCCTTCAAGCCCTTGACTGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10257#0 AGCAGGAATCCAATCCGAATCCACCATCAGCTCTCCTATCACATTCCCTGCATCCGTCTT 60
consensus_10257#1 ------------------------------------------------------------
consensus_10257#0 CGAGCGAGCTATGCGGCAGGAGGCCACCTGCAGCCTTGTGCTGACCCAGGACGCCCAACA 120
consensus_10257#1 ------------------------------------------------------------
consensus_10257#0 CCGGAAGAACCAGCCACCGCTGGCTGAGGAGGACGACGATAGGGATCATACCGACGATGC 180
consensus_10257#1 ------------------------------------------------------------
consensus_10257#0 CATGCCGCCGCCCTGCTCGATCTTGCTCCGCCAGGAGGAGGGCGAGGCGACGGCGGCGGC 240
consensus_10257#1 ------------------------------------------------------------
consensus_10257#0 GGCGGGGGAANGGCTGCTGGTGCCGCCGCTCAACTTCGCCATGGTGGATCATGGCGTATA 300
consensus_10257#1 ------------------------------------------------------------
consensus_10257#0 CCGCTCCGGCTTCCCCGACATCTCCAACCTGCCGTTCGTCGAGTCCCTTCGCCTCCGCTC 360
consensus_10257#1 ------------------------------------------------------------
consensus_10257#0 CGTCCTGTGCCTCTGCCCGGAGCCGTACCCGGAGGCGAACCAGGAGTTCCTCCGCGCCCA 420
consensus_10257#1 ------------------------------------------------------------
consensus_10257#0 CGGGATCAGGCTGTTCCAGTTCGGAATCGACGGTTCCAAGGAGCCCTTTGTGAACATACC 480
consensus_10257#1 ------------------------------------------------------------
consensus_10257#0 TGAAGATAGAATCCGTGAGGCTCTAAAAGTTGTGCTAGATGTGGCAAATCACCCGGTGCT 540
consensus_10257#1 --------------------------AGTTTGTGCTAGATGTG--CAATCACCCGGTGCT 32
* ************** **************
consensus_10257#0 TATTCAC-TGCAAGCGTGGAAAGCATCGAACTGGCTGTGTGGTTGGTTGCTTGAGGAAAT 599
consensus_10257#1 TATTCACATGCAAGCGTGGAAAGCATCGAACTGGCTGTGTG-TTGGTTGCTTGAGGAAAT 91
******* ********************************* ******************
consensus_10257#0 TGCAACGCTGGTGCCTAACTTCAATATTTGATGAATATCAGCGCTTTGCTGCTGCCAAAG 659
consensus_10257#1 TGCAACGCTGGTGCCTAACTTCAATATTTGATGAATATCAGCGCTTTGCTGCTGCCAAAG 151
************************************************************
consensus_10257#0 CAAGAGTATCTGACCTAAGGTTTATGGAACTATTTGATATCTCT-AGTTTAAAGCATTTA 718
consensus_10257#1 CAAGAGTATCTGACCTAAGGTTTATGGAACTATTTGATATCTCTGAGTTTAAAGCATTTA 211
******************************************** ***************
consensus_10257#0 CCAGCATCATTCTCATGTTGAGAAAGCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTG 778
consensus_10257#1 CCAGCATCATTCTCATGTTGAGAAAGCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTG 271
************************************************************
consensus_10257#0 GCAATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGTA 838
consensus_10257#1 GCNATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGT- 330
** ********************************************************
consensus_10257#0 AGAAAACTATCAGTGATACCTTTTAATTGTGTTTTCATCATTATACTACTTCCCAGTACA 898
consensus_10257#1 ------------------------------------------------------------
consensus_10257#0 TGTAGTCGCAAGTTTAACCTTATCATTTTTGGAGAATAGGTCCCGAGTTGTAGTTGATGT 958
consensus_10257#1 -----------------------------------------CCCGAGTTGTAGTTGATGT 349
*******************
consensus_10257#0 TAAAGGGCATAGAAACCGGATCGGTTGCCAATGCAGTTCACTGTATTAGTTCAGTGTTTT 1018
consensus_10257#1 TAAAGGGCATAGAAACCGGATCGGTTGCCAATGCAGTTCACTGTATGAGTTCAGTGTTTT 409
********************************************** *************
consensus_10257#0 TCAAGCGAATAAGAGGGATGCATCGGGAGCTATACCA-TTGTTGTTTCTGCGTTAGCAGT 1077
consensus_10257#1 TCAAGCGAATAAGAGGGATGCATCGGGAGCTATACCACTTGTTGTTTCTGCGTTA-CAGT 468
************************************* ***************** ****
consensus_10257#0 ACCAGTATGTATTTTTTTGGCAGTGCATAATTTTTTATATGTTGTAATTATGCTCAATCT 1137
consensus_10257#1 ACCAGTATGTATTTTTTTG-CAGTGCATAATTTTTTATATGTTGTAATTATGCTCAATCT 527
******************* ****************************************
consensus_10257#0 GTATATCGAATAGAATCTCAAATTGCAAGGAAAAACCATCATGGCCCTTCAAGCCCTTGA 1197
consensus_10257#1 GTATATCGAATAGAATCTCAAATTGCAAGGAAAAACCATCATGGCCCTTCAAGCCCTTGA 587
************************************************************
consensus_10257#0 CTGAATGTGTGTAATTGTTCAGTGTTTTAAAGAAGATTA 1236
consensus_10257#1 CTGAAA--------------------------------- 593
*****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||