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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1299 fasta sequence
[GGTGGCACGCGTGAGAGTGAGGAGCTCGCGAACTCCAAAACCCTAACCCTCTCGGAGCTTCACATCGGCGGCGGCGGCGGCGATGGCGGAGGGTGGCGGCGGAGGAGGAGGGTCGGCGGCGTCGGCGGCGCTGAAGGATCAGGGGAACGAGCAGTTCAAGGCGGGGAACTACCTCAAGGCCGCCGCGCTCTACACCCAGGCCATCAAGCTCGACCCCGACAACCCCACCCTCTATAGCAATCGGGCTGCTGCATTTCTCCATCTAGTTAAGCTTAATAAGGCACTCGCTGATGCTGATACGACAATAAAACTCAAGCCACAATGGGAAAAGGGTCATTTCAGGAAAGGGTGTGTTTTAGAGTCGATGGAACACTATGAGGAGGCAATATCTTCTTTTCAGATAGCTTTGCAACACAATCCACAAAATACAGAAGTTTCAAGAAAAATTAAGAGGCTTACTCAGTTGGCAAGGGAAAAGAAGCGGGCTCTTGATGTGGAGAACATGCGTTCTAATGTTGATGTTGCAAAGAACTTGGATTCACTGAAAACCGAGCTGGCTGGAAAATATGGAGATGCCGAACTGGGGCAAAGTATCTTCACTTTTGTTGTTAATGTGATTGAATCAGCTATAAAGGTCTGGCATGACACCGGAAAAGTAGATGCAAGAGTTAATTTTCTTCTTGATGACCAGAAGACTGATACTGAAAAACATGCCCCAGTGGTTAACATTGACAAGGCCTTTGACTCACCCCA-CACTCACAGCAGTTGCTTCACATTTTTGCGGCAATATTCCGAGGAGTCTTTCTCAAAGGCTGCTTGTATGGTAGCACCTAAGAGCGCCATCTCGTACCCTCAGGTCTGGAAAGGACAGGGATCAAGAAAATGGAAGCTTGACCAGAGTGATGGTTTCTTTGTGCAATTTGAGTCA-CCAATTCTGC-GGAAGATAT-GGTTTGTCCCTAGCACAACTGAAAAGGGACGAGTATTATG-CAGGAGTCCTGAGCTCCTGGACATTAGCATCCACGAAGTGCTTCCCCGTATATTCAAAGAAACGGCTTGAATAAACAACAAATGGACAGTGAATGGCTCCCAAATTCTTCCCCTGTTGTGGTCATATTCTTTCCTAGCTTACAGTTGCAAAGGGGATATTTTTCATAGCGTGGTGAGAGCTTAGATTTGCATGCCAGATTTTGTAAGCTGTTGATCTGTATTGTACACCGAGGCACACAAATTTTGCTGATCTGGTTTTTTAATTATATATGCCTTAAGTGGTGCAATTTCCATTGTAAAAAAAAAAAAAAA]
[+] EMBL AK073324 [GGTGGCACGCGTGAGAGTGAGGAGCTCGCGAACTCCAAAACCCTAACCCTCTCGGAGCTTCACATCGGCGGCGGCGGCGGCGATGGCGGAGGGTGGCGGCGGAGGAGGAGGGTCGGCGGCGTCGGCGGCGCTGAAGGATCAGGGGAACGAGCAGTTCAAGGCGGGGAACTACCTCAAGGCCGCCGCGCTCTACACCCAGGCCATCAAGCTCGACCCCGACAACCCCACCCTCTATAGCAATCGGGCTGCTGCATTTCTCCATCTAGTTAAGCTTAATAAGGCACTCGCTGATGCTGATACGACAATAAAACTCAAGCCACAATGGGAAAAGGGTCATTTCAGGAAAGGGTGTGTTTTAGAGTCGATGGAACACTATGAGGAGGCAATATCTTCTTTTCAGATAGCTTTGCAACACAATCCACAAAATACAGAAGTTTCAAGAAAAATTAAGAGGCTTACTCAGTTGGCAAGGGAAAAGAAGCGGGCTCTTGATGTGGAGAACATGCGTTCTAATGTTGATGTTGCAAAGAACTTGGATTCACTGAAAACCGAGCTGGCTGGAAAATATGGAGATGCCGAACTGGGGCAAAGTATCTTCACTTTTGTTGTTAATGTGATTGAATCAGCTATAAAGGTCTGGCATGACACCGGAAAAGTAGATGCAAGAGTTAATTTTCTTCTTGATGACCAGAAGACTGATACTGAAAAACATGCCCCAGTGGTTAACATTGACAAGGCCTTTGACTCACCCCA CACTCACAGCAGTTGCTTCACATTTTTGCGGCAATATTCCGAGGAGTCTTTCTCAAAGGCTGCTTGTATGGTAGCACCTAAGAGCGCCATCTCGTACCCTCAGGTCTGGAAAGGACAGGGATCAAGAAAATGGAAGCTTGACCAGAGTGATGGTTTCTTTGTGCAATTTGAGTCA CCAATTCTGC GGAAGATAT GGTTTGTCCCTAGCACAACTGAAAAGGGACGAGTATTATG CAGGAGTCCTGAGCTCCTGGACATTAGCATCCACGAAGTGCTTCCCCGTATATTCAAAGAAACGGCTTGAATAAACAACAAATGGACAGTGAATGGCTCCCAAATTCTTCCCCTGTTGTGGTCATATTCTTTCCTAGCTTACAGTTGCAAAGGGGATATTTTTCATAGCGTGGTGAGAGCTTAGATTTGCATGCCAGATTTTGTAAGCTGTTGATCTGTATTGTACACCGAGGCACACAAATTTTGCTGATCTGGTTTTTTAATTATATATGCCTTAAGTGGTGCAA ]
[+] EMBL AU069013 [ AGCTTCACATCGGCGGCGGCGGCGGCGATNGCNGAGGGTGGCGGCGGAGGAGGAGGGTCGGCGGCGTCGGCGGCGCTGAAGGATCAGGGGAACGAGCAGTTCAAGGCGGGGAACTACCTCAAGGCCGCCGCGCTCTACACCCAGGCCATCAAGCTCGACCCCGACAACCCCACCCTCTATAGCAATCGGGCTGCTGCATTTCTCCATCTAGTTAAGCTTAATAAGGCACTCGCTGATGCTGATACGACAATAAAACTCAAGCCACAATGGGAAAAGGGTCATTTCAGGAAAGGGTGTGTTTTAGAGTCGATGGAACACTATGAGGAGGCAATATCTTCTTTTCAGATAGCTTTGCAACACAATCCACAAAATACAGAAGTTTCAAGAAAAATTAAGAGGCTTACT ]
[+] EMBL C74850 [ CGAACTGGGGCAAAGTATCTTCACTTTTGTTGTTAATGTGATTGAATCAGCTATAAAGGTCTGGCATGACACCGGAAAAGTAGATGCAAGAGTTAATTTTCTTCTTGATGACCAGAAGACTGATACTGAAAAACATGCCCCAGTGGTTAACATTGACAAGGCCTTTGACTCACCCCA CACTCACAGCAGTTGCTTCACATTTTTGCGGCAATATTCCGAGGAGTCTTTCTCAAAGGCTGCTTGTATGGTAGCACCTAAGAGCGCCATCTCGTACCCTCAGGTCTGGAAAGGACAGGGATCAAGAAAATGGNAGCTTGACCAGAGTGATGGTTTCTTTGTGCAATTTGAGTCACCCAATTCTGCGGGAAGATATGGGTTTGTCCCTAGCACAACTGAAAAGGGACGAGTATTANGCCAGGAGTCCTGAGCT ]
[-] EMBL CA762006 [ AAGGTCTGGCATGACACCGGAAAAGTAGATGCAAGAGTTAATNTTCTTCTTGATGACCAGAAGACTGATACTGAAAAACATGCCCCAGTGGTTAACATTGACAAGGCCTTTGACTCACCCCANCACTCACAGCAGTTGCTTCACATTTTTGCGGCAATATTCCGAGGAGTCTTTCTCAAAGGCTGCTTGTATGGTAGCACCTAAGAGCGCCATCTCGTACCCTCAGGTCTGGAAAGGACAGGGATCAAGAAAGTGGAAGCTTGACCAGAGTGATGGTTTCTTTGTGCAATTTGAGTCA CCAATTTTGC GGAAGATAT GGTTTGTCCCTAGCACAACTGAAAAGGGACGAGTATTATG CAGGAGTCCTGAGCTCCTGGACATTAGCATCCACGAAGTGCTTCCCCGTATATTCAAAGAAACGGCTTGAATAAACAACAAATGGACAGTGAATGGCTCCCAAATTCTTCCCCTGTTGTGGTCATATTCTTTCCTAGCTTACAGTTGCAAAGGGGATATTTTTCATAGCGTGGTGAGAGCTTAGATTTGCATGCCAGATTTTGTAAGCTGTTGATCTGTATTGTACACCGAGGCACACAAATTTTGCTGATCTGGTTTTTTAATTATATATGCCTTAAGTGGTGCAATTTCCATTGTAAAAAAAAAAAAAAA]
[+] EMBL CA305755 [ TCTGGAAAGGACAGGGATCAAGAAAATGGAAGCTTGACCAGAGTGATGGTTTCTTTGTGCAATTTGAGTCA CCAATTCTGC GGAAGATAT GGTTTGTCCCTAGCACAACTGAAAAGGGACGAGTATTATG CAGGAGTCCTGAGCTCCTGGACATTAGCATCCACGAAGTGCTTCCCCGTATATTCAAAGAAACGGCTTGAATAAACAACAAATGGACAGTGAATGGCTCCCAAATTCTTCCCCTGTTGTGGTCATATTCTTTCCTAGCTTACAGTTGCAAAGGGGATATTTTTCATAGCGTGGTGAGAGCTTAGATTTGCATGCCAGATTTTGTAAGCTGTTGATCTGTATTGTA ]
consensusID : consensus_10263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 773 fasta sequence
[ATCTAGTTAAGCTTAATAAGGCACTCGCTGATCCTGATACGACAATAAAACTCAAGCCACAATGGGAAAAGGGTCATTTCAGGAAAGGGTGTGTTTTAGAGTCGATGGAACACTATGAGGAGGTGAGAGTAAAGGACAATTCCTTGCTTTTTCTCAACAGGGAGAAGGATAATTATCTCTTTTTTATTTTCTGTTATGTAAGCTTTAGCCAAGCCTTCCGTATTTGGCAAGCTGAGAAAATTGTGGTAAGAAATACCCTAGTTTGGAAGTGCACATATCACTTGCAATTATCAAAAGTAAAGTTCTGAAATCAGTTGATGCTGAATACATTATAGTGCAATTGCATTAAGGGAAACCTTAAATCTGTAAGATAAATTTGAATTTTATTCATTTTACCATGTTATATCATAACATTGGTCTTTACAATTGAACAAAGTTTTTCCTTCAATCATGTTAACATGTGTTCATGTCTATTCGGGGGTTTTATTTTTGTGCTTGAGCAGTGGCCCTCTTGCTGCTATTTTCATATGGCCACATGCAAAGATTGGATGTTTGGCTGAAGTACTTAAACTATTCATCAACTTCTCTTTCATGAGATCAAACTCTTAAAATATCAGTAGCATTGATTGTACATTATCAAGCTATTCAAAATATTAGCATTGATTCTGTATTAGCTATTTTCTGGTGCAGGCAATATCTTCTTTTCAGATAGCTTTGCAACACAATCCACAAAATACAGAAGTTTCAAGAAAAATTAAGAGGCTTACTCAGTT]
[+] EMBL CB000357 [ATCTAGTTAAGCTTAATAAGGCACTCGCTGATCCTGATACGACAATAAAACTCAAGCCACAATGGGAAAAGGGTCATTTCAGGAAAGGGTGTGTTTTAGAGTCGATGGAACACTATGAGGAGGTGAGAGTAAAGGACAATTCCTTGCTTTTTCTCAACAGGGAGAAGGATAATTATCTCTTTTTTATTTTCTGTTATGTAAGCTTTAGCCAAGCCTTCCGTATTTGGCAAGCTGAGAAAATTGTGGTAAGAAATACCCTAGTTTGGAAGTGCACATATCACTTGCAATTATCAAAAGTAAAGTTCTGAAATCAGTTGATGCTGAATACATTATAGTGCAATTGCATTAAGGGAAACCTTAAATCTGTAAGATAAATTTGAATTTTATTCATTTTACCATGTTATATCATAACATTGGTCTTTACAATTGAACAAAGTTTTTCCTTCAATCATGTTAACATGTGTTCATGTCTATTCGGGGGTTTTATTTTTGTGCTTGAGCAGTGGCCCTCTTGCTGCTATTTTCATATGGCCACATGCAAAGATTGGATGTTTGGCTGAAGTACTTAAACTATTCATCAACTTCTCTTTCATGAGATCAAACTCTTAAAATATCAGTAGCATTGATTGTACATTATCAAGCTATTCAAAATATTAGCATTGATTCTGTATTAGCTATTTTCTGGTGCAGGCAATATCTTCTTTTCAGATAGCTTTGCAACACAATCCACAAAATACAGAAGTTTCAAGAAAAATTAAGAGGCTTACTCAGTT]
[+] EMBL CA998878 [ TCTAGTTAAGCTTAATAAGGCACTCGCTGATGCTGATACGACAATAAAACTCAAGCCACAATGGGAAAAGGGTCATTTCAGGAAAGGGTGTGTTTTAGAGTCGATGGAACACTATGAGGAGGTGAGAGTAAAGGACAATTCCTTGCTTTTTCTCAACAGGGAGAAGGATAATTATCTCTTTTTTATTTTCTGTTATGTAAGCTTTAGCCAAGCCTTCCGTATTTGGCAAGCTGAGAAAATTGTGGTAAGAAATACCCTAGTTTGGAAGTGCACATATCACTTGCAATTATCAAAAGTAAAGTTCTGAAATCAGTTGATGCTGAATACATTATAGTGCAATTGCATTAAGGGAAACCTTAAATCTGTAAGATAAATTTGAATTTTATTCATTTTACCATGTTATATCATAACATTGGTCTTTACAATTGAACAAAGTTTTTCCTTCAATCATGTTAACATGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10263#0 GGTGGCACGCGTGAGAGTGAGGAGCTCGCGAACTCCAAAACCCTAACCCTCTCGGAGCTT 60
consensus_10263#1 ------------------------------------------------------------
consensus_10263#0 CACATCGGCGGCGGCGGCGGCGATGGCGGAGGGTGGCGGCGGAGGAGGAGGGTCGGCGGC 120
consensus_10263#1 ------------------------------------------------------------
consensus_10263#0 GTCGGCGGCGCTGAAGGATCAGGGGAACGAGCAGTTCAAGGCGGGGAACTACCTCAAGGC 180
consensus_10263#1 ------------------------------------------------------------
consensus_10263#0 CGCCGCGCTCTACACCCAGGCCATCAAGCTCGACCCCGACAACCCCACCCTCTATAGCAA 240
consensus_10263#1 ------------------------------------------------------------
consensus_10263#0 TCGGGCTGCTGCATTTCTCCATCTAGTTAAGCTTAATAAGGCACTCGCTGATGCTGATAC 300
consensus_10263#1 --------------------ATCTAGTTAAGCTTAATAAGGCACTCGCTGATCCTGATAC 40
******************************** *******
consensus_10263#0 GACAATAAAACTCAAGCCACAATGGGAAAAGGGTCATTTCAGGAAAGGGTGTGTTTTAGA 360
consensus_10263#1 GACAATAAAACTCAAGCCACAATGGGAAAAGGGTCATTTCAGGAAAGGGTGTGTTTTAGA 100
************************************************************
consensus_10263#0 GTCGATGGAACACTATGAGGAGGCAATATCTTCTTTTCAGATAGCTTTGCAACACAATCC 420
consensus_10263#1 GTCGATGGAACACTATGAGGAGGTGAGAG------------------TAAAGGACAATTC 142
*********************** * * * * ***** *
consensus_10263#0 ACAAAATACAGAAGTTTCAAGAAAAATTAAGAGGCTTACTCAGTTGGCAAGGGAAAAGAA 480
consensus_10263#1 CTTGCTTTT-----TCTCAACAGGGAGAAGGATAATTATCTCTTTTTTATTTTCTGTTAT 197
* * **** * * * ** *** ** * *
consensus_10263#0 GCGGGCTCTTGATGTGGAGAACATGCGTTCTAATGTTGATGTTGCAAAGAACTTGGATTC 540
consensus_10263#1 GTAAGCTTTAGC---------CAAGCCTTCCGTATTTGGCAAGCTGAGAAAATTG----T 244
* *** * * ** ** *** *** * ** ***
consensus_10263#0 ACTGAAAACCGAGCTGGCTGGAAAATATGGAGATGCCGAACTGGGGCAAAGTATCTTCAC 600
consensus_10263#1 GGTAAGAAATACCCTAGTTTGGAAGTGCACATATCACTTGCAATTATCAA--AAGTAAAG 302
* * ** ** * * * ** * * ** * * ** * * *
consensus_10263#0 TTTTGTTGTTAAT-GTGATTGAATCAGCTATAAAGGTCTGGCATGACACCGGAAAAGTAG 659
consensus_10263#1 TTCTGAAATCAGTTGATGCTGAATACATTATAGTGCAATTGCATTA-AGGGAAACCTTAA 361
** ** * * * * ***** **** * * **** * * * ** **
consensus_10263#0 ATGCAAGAGTTAATTTTCTTCTTGATGACCAGAAGACTGATACTGAAAAACATGCCCCAG 719
consensus_10263#1 ATCTGTAAGATAAATTTGAATTTTATTCATTTTACCATGTTATATCATAACAT----TGG 417
** ** *** *** ** ** * ** ** * ***** *
consensus_10263#0 TGGTTAACATTGA-CAAGGCCTTTGACTCACCCCACACTCACAGCAGTTGCTTCACATTT 778
consensus_10263#1 TCTTTACAATTGAACAAAGTTTTT-------CCTTCAATCATGTTAA------CATGTGT 464
* *** ***** *** * *** ** ** *** * ** * *
consensus_10263#0 TTGCGGCAATATTCCGAGGAGTCTTTCTCAAAGGCTGCTTGTATGGTAGCACCTAAGAGC 838
consensus_10263#1 TCATGTC--TATTCGGGGGTTTTATTTTTG-----TGCTTGAGCAGTGGC-CCTCTTGCT 516
* * * ***** * ** * ** * ****** ** ** ***
consensus_10263#0 GCCATCT-CGTACCCTCAGGTCTGGAAAGGACAGGGATCAAGAAAATGGAAGCTTGACCA 897
consensus_10263#1 GCTATTTTCATATGGCCACA--TGCAAAGATTGGATGTTTGGCTGA-AGTACTTAAACTA 573
** ** * * ** ** ** **** * * * * * * * ** *
consensus_10263#0 G--AGTGATGGTTTCTTTGTGCAATTTGAGTCACCAATTCTGCGGAAGATATGGTTTGTC 955
consensus_10263#1 TTCATCAACTTCTCTTTCATGAGATCAAACTCTTAAAATAT-CAGTAGCATTGATTGTAC 632
* * * ** ** ** * ** ** * * * * ** ** ** *
consensus_10263#0 CCTAGCACAACTGAAAAGGGACGAGTATT-ATGCAGGAGTCCTGAGCTCCTGGACATTAG 1014
consensus_10263#1 ATTATCAAGCTATTCAAAATATTAGCATTGATTCTGTATTAGCTATTTTCTGGT-----G 687
** ** ** * ** *** ** * * * * * * **** *
consensus_10263#0 CATCCACGAAGTGCTTCCCCGTATATTCAAAGAAACGGCTTGAATAAACAACAAATGGAC 1074
consensus_10263#1 CAGGCAATATCTTCTTTTCAGATAGCTTTGCAACACAATCC--ACAAAATACAGAAGTTT 745
** ** * * *** * * * * ** * *** *** * *
consensus_10263#0 AGTGAATGGCTCCCAAATTCTTCCCCTGTTGTGGTCATATTCTTTCCTAGCTTACAGTTG 1134
consensus_10263#1 CAAGAAAAATT--AAGAGGCTTACTCAGTT------------------------------ 773
*** * * * *** * * ***
consensus_10263#0 CAAAGGGGATATTTTTCATAGCGTGGTGAGAGCTTAGATTTGCATGCCAGATTTTGTAAG 1194
consensus_10263#1 ------------------------------------------------------------
consensus_10263#0 CTGTTGATCTGTATTGTACACCGAGGCACACAAATTTTGCTGATCTGGTTTTTTAATTAT 1254
consensus_10263#1 ------------------------------------------------------------
consensus_10263#0 ATATGCCTTAAGTGGTGCAATTTCCATTGTAAAAAAAAAAAAAAA 1299
consensus_10263#1 ---------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||