These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10265#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1034 fasta sequence [CGGCGAGCGACGACGCTCAGATGCGGCGCCGCTGCTCGGGTGGAAGGGCTGGGGCGGAGGGAGGCGTTGCTCGGCGTGCTCCTCTCCACGGCGACGGCGGCGTCCGCGCCCGTCGCCGCCGTGGCCGCGACCGCCGAGTTGCAGGAGGGGTTCCGCACGTACG-AGGATGAGGCCAACAAGTTCAGCATCGCCATTCCACAAGACTGGCTGA-TCGGCGCCGGCG-AGGTCAGCGGCTTCAAGTCCGTCACGGCGTTCTACCCTGACCAAGTCGCCGACTCCAATGTCAGCGTAGCCATCACCGGAATCGGCCCCGATTTCACCAGCCTCAAGTCGTTCGGCGACGTCGACGCCTTCGCAGAGACCCTGGTGAACGGCCTGGACAGGAGCTGGAAACGGCCGCCGGGGGTCGCCGCGAAGCTCATCAACTCCAGGGCAGCCAACGGGTTTTACTACATCGAGTACACGCTGCAGAACCCCGGCGAGCAGCGCCGGCACATTGTCTCGGCCATCGGGATGGCGTTCAACGGCTGGTACAACCGGCTCTACACGGTGACAGGCCAGTACATCGATGAGGACGGGGATGTAGACAAGTACAGGGCTCAGATAGAGAAGTGTGTTCAGTCATTCAGGTTCACATGAAAGAGGAGCAT-CCTACACAACAT-CCAACAAGGCGAGGACGAAAAACATTTTGTAAACCAACGTATTTCGTTATAATTGTAAATCAATCAGTATATTCATGTCATCAGTTCAACCAACTAAATGTACACCAATTGTTCCGAGATTTTGACGATGCGGCCTTGCCGAGGCCAACATGAGCTAATTATGTTGTGGCAAGTCATAAGCATTGTTTTCTATGCATTTTTAAGGGAGAAAAAACAGGTGTATTTGTTAGATTTCAGGCGGCCAAAATTTTGTAAAATTTCAATCACCCAAAGTTGCACATTGCTATATTTTAGTTCATTTTAACATCCCAGTTTAAATATGTTTGTATGTAATTTTGTTTTTTTAATGAAGTTCATGTTTATGGATAAAAA] [+] EMBL AK068227 [CGGCGAGCGACGACGCTCAGATGCGGCGCCGCTGCTCGGGTGGAAGGGCTGGGGCGGAGGGAGGCGTTGCTCGGCGTGCTCCTCTCCACGGCGACGGCGGCGTCCGCGCCCGTCGCCGCCGTGGCCGCGACCGCCGAGTTGCAGGAGGGGTTCCGCACGTACG AGGATGAGGCCAACAAGTTCAGCATCGCCATTCCACAAGACTGGCTGA TCGGCGCCGGCG AGGTCAGCGGCTTCAAGTCCGTCACGGCGTTCTACCCTGACCAAGTCGCCGACTCCAATGTCAGCGTAGCCATCACCGGAATCGGCCCCGATTTCACCAGCCTCAAGTCGTTCGGCGACGTCGACGCCTTCGCAGAGACCCTGGTGAACGGCCTGGACAGGAGCTGGAAACGGCCGCCGGGGGTCGCCGCGAAGCTCATCAACTCCAGGGCAGCCAACGGGTTTTACTACATCGAGTACACGCTGCAGAACCCCGGCGAGCAGCGCCGGCACATTGTCTCGGCCATCGGGATGGCGTTCAACGGCTGGTACAACCGGCTCTACACGGTGACAGGCCAGTACATCGATGAGGACGGGGATGTAGACAAGTACAGGGCTCAGATAGAGAAGTGTGTTCAGTCATTCAGGTTCACATGAAAGAGGAGCAT CCTACACAACAT CCAACAAGGCGAGGACGAAAAACATTTTGTAAACCAACGTATTTCGTTATAATTGTAAATCAATCAGTATATTCATGTCATCAGTTCAACCAACTAAATGTACACCAATTGTTCCGAGATTTTGACGATGCGGCCTTGCCGAGGCCAACATGAGCTAATTATGTTGTGGCAAGTCATAAGCATTGTTTTCTATGCATTTTTAAGGGAGAAAAAACAGG ] [+] EMBL AU078715 [CGGCGAGCGACGACGCTCAGATGCGGCGCCGCTGCTCGGGTGGAAGGGCTGGGGCGGAGGGAGGCGTTGCTCGGCGTGCTCCTCTCCANGGCGACGGCGGCGTCCGCGCNCGTCGCCGCCGTGGCCGCGACCGCCGAGTTGCAGGAAGGGTTNCGCACGTACGAAGGATGAGGCCAACAAGTTCAGCATCGCCATTCCACAAGACTNGCTGATTCGGCGCCGGCGAAGTTNAACGGGTTtna ] [+] EMBL AU055723 [ GAGGAGCATCCCTACACAACATCCCAACAAGGCGAGGACGAAAAACATTTTGTAAACCAACGTATTTCGTTATAATTGTAAATCAATCAGTATATTCATGTCATCAGTTCAACCAACTAAATGTACACCAATTGTTCCGAGATTTTGACGATGCGGCCTTGCCGAGGCCAACATGAGCTAATTATGTTGTGGCAAGTCATAAGCATTGTTTTCTATGCATTTTTAAGGGAGAAAAAACAGGTGTATTTGTTAGATTTCAGGCGGCCAAAATTTTGTAAAATTTCAATCACCCAAAGTTGCACATTGCTATATTTTAGTTCATTTTAACATCCCAGTTTAAATATGTTTGTATGTAATTTTGTTTTTTTAATGAAGTTCATGTTTATGGATAAAAA] [+] EMBL BQ908470 [ ccgTCAGTTCAACCAACTAAATGTACACC ATTGTTCCGAGATTTTGACGATGCGGCCTTGCCGAGGCCAACATGAGCTAATTATGTTGTGGCAAGTCATAAGCATTGTTTTCTATGCATTTTTAAGGGAGAAAAAACAGGTGTATTTGTTAGATTTCAGGCGGCCAAAATTTTGTAAAATTTCAATCACCCAAAGTTGCACATTGCTATATTTTAGTTCATTTTAACATCCCAGTTTAAAaaaa ] consensusID : consensus_10265#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 719 fasta sequence [GTTGCCCTTAGAGGCAGGAGGGGTTCCGCACGTACGAGGATGAGGCCAACAAGTTCAGCATCGCCATTCCACAAGACTGGCTGATCGGCGCCGGCGAGGTCATCGGCTTCAAGTCCGGCACGGCGTTCTACCCTGACCAACTCGCCGACTCCAATGTCAGCGTAACCATCACCGGAATCGGCCCCGATTTCACCAGCCTCAAGTCGTTCGGCGACGTCCACGCCTTCGCAGAGACCCTGGTGAACGGCCTGGACAGGAGCTGGAAACGGCCGCCGGGGGTCGCCGCGAAGCTCATCAACTCCAGGGCAGCCAACGGGTTTTACTACATCCAGTACACGCTGCATAACCCCGGCGAGCAGCGCCGGCACATTGTCTCGGCCATCGGGATGGCGTTCAACGGCTGGTACAACCGGCTCTACACGGTGACAGGCCACTACATCGATGAGGACGGGGATGTACACAAGTACAGGGCTCATATACAGAAGTGTGTTCAGTCATTCAAGTTCACATGAAAGAGGAGCATCCTACACAACATCCAACAAGGCGAGGACGAAAAACATTTTGTAAACCAACGTATTTCGTTATAATTGTAAATCAATCAGTATATTCATGTCATCAGGTCAACCAACTAAATGTACACCAATTGTTCCGAGATTTTGACGATGCGGCCTTGCCGAGGCCAACATGAGCTAATTATGTTGTGGCAAAAACCTAAAAGG] [+] EMBL CB681521 [GTTGCCCTTAGAGGCAGGAGGGGTTCCGCACGTACGAGGATGAGGCCAACAAGTTCAGCATCGCCATTCCACAAGACTGGCTGATCGGCGCCGGCGAGGTCATCGGCTTCAAGTCCGGCACGGCGTTCTACCCTGACCAACTCGCCGACTCCAATGTCAGCGTAACCATCACCGGAATCGGCCCCGATTTCACCAGCCTCAAGTCGTTCGGCGACGTCCACGCCTTCGCAGAGACCCTGGTGAACGGCCTGGACAGGAGCTGGAAACGGCCGCCGGGGGTCGCCGCGAAGCTCATCAACTCCAGGGCAGCCAACGGGTTTTACTACATCCAGTACACGCTGCATAACCCCGGCGAGCAGCGCCGGCACATTGTCTCGGCCATCGGGATGGCGTTCAACGGCTGGTACAACCGGCTCTACACGGTGACAGGCCACTACATCGATGAGGACGGGGATGTACACAAGTACAGGGCTCATATACAGAAGTGTGTTCAGTCATTCAAGTTCACATGAAAGAGGAGCATCCTACACAACATCCAACAAGGCGAGGACGAAAAACATTTTGTAAACCAACGTATTTCGTTATAATTGTAAATCAATCAGTATATTCATGTCATCAGGTCAACCAACTAAATGTACACCAATTGTTCCGAGATTTTGACGATGCGGCCTTGCCGAGGCCAACATGAG ] [-] EMBL CB682572 [ GGTTCCGCACGTACGAGGATGAGGCCAACAAGTTCAGCATCGCCATTCCACAAGACTGGCTGATCGGCGCCGGCGAGGTCAGCGGCTTCAAGTCCGTCACGGCGTTCTACCCTGACCAAGTCGCCGACTCCAATGTCAGCGTAGCCATCACCGGAATCGGCCCCGATTTCACCAGCCTCAAGTCGTTCGGCGACGTCGACGCCTTCGCAGAGACCCTGGTGAACGGCCTGGACAGGAGCTGGAAACGGCCGCCGGGGGTCGCCGCGAAGCTCATCAACTCCAGGGCAGCCAACGGGTTTTACTACATCGAGTACACGCTGCAGAACCCCGGCGAGCAGCGCCGGCACATTGTCTCGGCCATCGGGATGGCGTTCAACGGCTGGTACAACCGGCTCTACACGGTGACAGGCCAGTACATCGATGAGGACGGGGATGTAGACAAGTACAGGGCTCAGATAGAGAAGTGTGTTCAGTCATTCAGGTTCACATGAAAGAGGAGCATCCTACACAACATCCAACAAGGCGAGGACGAAAAACATTTTGTAAACCAACGTATTTGGTTATAATTGTAAATCAATCAGTATATTCATGTCATCAGTTCAACCAACTAAATGTACACCAATTGTTCCGAGATTTTGACGATGCGGCCTTGCCGAGGCCAACATGAGCTAATTATGTTGTGGCAAAAACCTAAAAGG] consensusID : consensus_10265#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence [CCGTCAGTTCAACCAACTTAAAAATTGGTAACAACCACATTTGGTTTCCGGATTTTGACGATGCGGGCCTTGCCCGAGGCCACATGAGCTAATTATGTTGTGGCAAGTCATAAGCATTGTTTTCTAGCATTTTTAAGGGAGAAAAAACAGGTGTATTTGTTAGATTTCAGCGGCCAAATTTTGTAAAATTTCAATCACCCAAGTTGCACATTGCTATATTTTTAGTTCATTTAACATCCCAGTTTAAAAAAA] [+] EMBL BQ908452 [CCGTCAGTTCAACCAACTTAAAAATTGGTAACAACCACATTTGGTTTCCGGATTTTGACGATGCGGGCCTTGCCCGAGGCCACATGAGCTAATTATGTTGTGGCAAGTCATAAGCATTGTTTTCTAGCATTTTTAAGGGAGAAAAAACAGGTGTATTTGTTAGATTTCAGCGGCCAAATTTTGTAAAATTTCAATCACCCAAGTTGCACATTGCTATATTTTTAGTTCATTTAACATCCCAGTTTAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10265#0 CGGCGAGCGACGACGCTCAGATGCGGCGCCGCTGCTCGGGTGGAAGGGCTGGGGCGGAGG 60 consensus_10265#1 ------------------------------------------------------------ consensus_10265#2 ------------------------------------------------------------ consensus_10265#0 GAGGCGTTGCTCGGCGTGCTCCTCTCCACGGCGACGGCGGCGTCCGCGCCCGTCGCCGCC 120 consensus_10265#1 ------------------------------------------------------------ consensus_10265#2 ------------------------------------------------------------ consensus_10265#0 GTGGCCGCGACCGCCGAGTTGCAGGAGGGGTTCCGCACGTACGAGGATGAGGCCAACAAG 180 consensus_10265#1 ------GTTGCC-CTTAGAGGCAGGAGGGGTTCCGCACGTACGAGGATGAGGCCAACAAG 53 consensus_10265#2 ------------------------------------------------------------ consensus_10265#0 TTCAGCATCGCCATTCCACAAGACTGGCTGATCGGCGCCGGCGAGGTCAGCGGCTTCAAG 240 consensus_10265#1 TTCAGCATCGCCATTCCACAAGACTGGCTGATCGGCGCCGGCGAGGTCATCGGCTTCAAG 113 consensus_10265#2 ------------------------------------------------------------ consensus_10265#0 TCCGTCACGGCGTTCTACCCTGACCAAGTCGCCGACTCCAATGTCAGCGTAGCCATCACC 300 consensus_10265#1 TCCGGCACGGCGTTCTACCCTGACCAACTCGCCGACTCCAATGTCAGCGTAACCATCACC 173 consensus_10265#2 ------------------------------------------------------------ consensus_10265#0 GGAATCGGCCCCGATTTCACCAGCCTCAAGTCGTTCGGCGACGTCGACGCCTTCGCAGAG 360 consensus_10265#1 GGAATCGGCCCCGATTTCACCAGCCTCAAGTCGTTCGGCGACGTCCACGCCTTCGCAGAG 233 consensus_10265#2 ------------------------------------------------------------ consensus_10265#0 ACCCTGGTGAACGGCCTGGACAGGAGCTGGAAACGGCCGCCGGGGGTCGCCGCGAAGCTC 420 consensus_10265#1 ACCCTGGTGAACGGCCTGGACAGGAGCTGGAAACGGCCGCCGGGGGTCGCCGCGAAGCTC 293 consensus_10265#2 ------------------------------------------------------------ consensus_10265#0 ATCAACTCCAGGGCAGCCAACGGGTTTTACTACATCGAGTACACGCTGCAGAACCCCGGC 480 consensus_10265#1 ATCAACTCCAGGGCAGCCAACGGGTTTTACTACATCCAGTACACGCTGCATAACCCCGGC 353 consensus_10265#2 ------------------------------------------------------------ consensus_10265#0 GAGCAGCGCCGGCACA-TTGTCTCGGCCATCGGGATGGCGTTCAACGGCTGGTACAACCG 539 consensus_10265#1 GAGCAGCGCCGGCACA-TTGTCTCGGCCATCGGGATGGCGTTCAACGGCTGGTACAACCG 412 consensus_10265#2 -----CCGTCAGTTCAACCAACTTAAAAATTGG--TAACAACCA-CATTTGGTTT--CCG 50 ** * * ** ** ** ** * * ** * **** *** consensus_10265#0 GCTCTACACGGTGACAGGCCAGTACATCGATGAGGACGGGGATGTAGACAAGTACAGGGC 599 consensus_10265#1 GCTCTACACGGTGACAGGCCACTACATCGATGAGGACGGGGATGTACACAAGTACAGGGC 472 consensus_10265#2 GATTTTGACGATG-CGGGCCTTGCCCGAGGCCACATGAGCTAATTATGTTGTGGCAAG-- 107 * * * *** ** * **** * * * * * ** ** * consensus_10265#0 TCAGATAGAGAAGTGTGTTCAGTCATTCA-GGTTCACATGAAAGAGGAGCATCCTACACA 658 consensus_10265#1 TCATATACAGAAGTGTGTTCAGTCATTCA-AGTTCACATGAAAGAGGAGCATCCTACACA 531 consensus_10265#2 TCATA---AGCATTGTTTTCTAGCATTTTTAAGGGAGAAAAAACAGGTGTATT---TGTT 161 *** * ** * *** *** **** * * *** *** * ** consensus_10265#0 ACATCCAACAAGGCGAGGACGAAAAACATTTTGTAAACCAA--CGTATTTCGTTATAATT 716 consensus_10265#1 ACATCCAACAAGGCGAGGACGAAAAACATTTTGTAAACCAA--CGTATTTCGTTATAATT 589 consensus_10265#2 AGATTTCAGCGGCCAAATTTTGTAAAATTTCAATCACCCAAGTTGCACATTGCTATATTT 221 * ** * * * * *** ** * * **** * * * * **** ** consensus_10265#0 GTAAATCAATCAGTATATTCATGTCATCAGTTCAACCAACTAAATGTACACCAATTGTTC 776 consensus_10265#1 GTAAATCAATCAGTATATTCATGTCATCAGGTCAACCAACTAAATGTACACCAATTGTTC 649 consensus_10265#2 TTAGTTCATTTAACATCCCAGTTTAAAAAAA----------------------------- 252 ** *** * * ** * * * * consensus_10265#0 CGAGATTTTGACGATGCGGCCTTGCCGAGGCCAACATGAGCTAATTATGTTGTGGCAAGT 836 consensus_10265#1 CGAGATTTTGACGATGCGGCCTTGCCGAGGCCAACATGAGCTAATTATGTTGTGGCAAAA 709 consensus_10265#2 ------------------------------------------------------------ consensus_10265#0 -CATAAGCATTGTTTTCTATGCATTTTTAAGGGAGAAAAAACAGGTGTATTTGTTAGATT 895 consensus_10265#1 ACCTAAAAGG-------------------------------------------------- 719 consensus_10265#2 ------------------------------------------------------------ consensus_10265#0 TCAGGCGGCCAAAATTTTGTAAAATTTCAATCACCCAAAGTTGCACATTGCTATATTTTA 955 consensus_10265#1 ------------------------------------------------------------ consensus_10265#2 ------------------------------------------------------------ consensus_10265#0 GTTCATTTTAACATCCCAGTTTAAATATGTTTGTATGTAATTTTGTTTTTTTAATGAAGT 1015 consensus_10265#1 ------------------------------------------------------------ consensus_10265#2 ------------------------------------------------------------ consensus_10265#0 TCATGTTTATGGATAAAAA 1034 consensus_10265#1 ------------------- consensus_10265#2 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||