cluster # 10266

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Oryza sativa
cluster # 10266 cluster # 10266 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10266#0 length = 1151 sequences # 2

consensus_10266#1 length = 617 sequences # 5

consensusID : consensus_10266#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1151
fasta sequence

                              [AAGGTAGACCGCGGTGTACTAATCTACCATTAGTAGATACTACAGCGACTTCTTTATTACGAAAGAAAAAAGAAAGCGAAAAAACGAGAGAGGAAAAAGGAAAGGGGATCGGCGTTGCGTCGTCGCCTTCAGCAACTCTCCGCTCGCCGCCGCCGATGCGCGCCTGTCGCTCCCCTCCGCCCGCCGCCGGTGCGCCCATCTTCCTGTCGCTCCCCTCCCCCTGCTGCTCGTCACTCCTCCCATCTCCCCGCGCTTCTTCCCTTTGCCCGTCGCTCGCTGCATCAGATCTGGATCGGAGGCTGGTGACAGAAGGTGGGAGACGACGGTGGCCGGCGATTGAAGGTCGGGGGACGGCGGGAAGAAGAGGAGGGATGCAGCAGCAAGACGGATCCGCCTAGGGGCTCGTCGTTGTGGCCCCCGTCGAGCTTCGTCGCCTTTGAGCTGTTCGCTGCTGCTTCGCCATGTCCGTAGCTTCGTTGCTCGCTGGGAGAATGAGGAGGGGGAGAGGGGCAGGGTGGTGACCCCATCGCCTGCCCTTGCAGGCGCGGGTGCGGCGCTGCACGCGCGGGTGCATGGCGTTGCATCGCGCGGGCCTGGCTGAGCAGCGAAGCTCAAATCGAGCGCTCCTGCTCAGCCTGGCTCACGGGGCTTTTTTGCATCCACTCGGCCAGGCTGGGAGCTACGTGCAGGCAACCAAACGACCACATAGTGCATCCACGCATTCGAGCCAAGGACTATGCAGGCAACCAAACACACCTAGCATCCCTCACCCTGCTGACAACAAAGTCAACATAAGAGTTCAGACTACAGGGGATCCAGCCATTGATGTATTCAAGGATGGTTTACAGGACTTGATAGTCATGTGCCAACATGTTAGAGGGACTTTTGACAATGCAGTGGTAGATTTTAGATCAAAGGTACCTGCTCAGCAAATGGACATAGATTCAAAGTAGAAATGAAATTTCCGTATGCCCTCTGCTCCATTGTTTTCCATCAGAACTTTGTGTAACCAGTTCATTATTGGAACGTTGATTAGGTGTGATTCTTGGCTATAAGGCGATTTTACTAGAAATCTGCTTTGACTGAGTTGTGGAAAGTCAGTGCTCTGCTTTTCAATTTTTGGAAAATCAGTCTATGTACTAAAACTAGCC]

[-] EMBL CA756062             [AAGGTAGACCGCGGTGTACTAATCTACCATTAGTAGATACTACAGCGACTTCTTTATTACGAAAGAAAAAAGAAAGCGAAAAAACGAGAGAGGAAAAAGGAAAGGGGATCGGCGTTGCGTCGTCGCCTTCAGCAACTCTCCGCTCGCCGCCGCCGATGCGCGCCTGTCGCTCCCCTCCGCCCGCCGCCGGTGCGCCCATCTTCCTGTCGCTCCCCTCCCCCTGCTGCTCGTCACTCCTCCCATCTCCCCGCGCTTCTTCCCTTTGCCCGTCGCTCGCTGCATCAGATCTGGATCGGAGGCTGGTGACAGAAGGTGGGAGACGACGGTGGCCGGCGATTGAAGGTCGGGGGACGGCGGGAAGAAGAGGAGGGATGCAGCAGCAAGACGGATCCGCCTAGGGGCTCGTCGTTGTGGCCCCCGTCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK070936             [                                                                                               AAAGGAAAGGGGATCGGCGTTGCGTCGTCGCCTTCAGCAACTCTCCGCTCGCCGCCGCCGATGCGCGCCTGTCGCTCCCCTCCGCCCGCCGCCGGTGCGCCCATCTTCCTGTCGCTCCCCTCCCCCTGCTGCTCGTCACTCCTCCCATCTCCCCGCGCTTCTTCCCTTTGCCCGTCGCTCGCTGCATCAGATCTGGATCGGAGGCTGGTGACAGAAGGTGGGAGACGACGGTGGCCGGCGATTGAAGGTCGGGGGACGGCGGGAAGAAGAGGAGGGATGCAGCAGCAAGACGGATCCGCCTAGGGGCTCGTCGTTGTGGCCCCCGTCGAGCTTCGTCGCCTTTGAGCTGTTCGCTGCTGCTTCGCCATGTCCGTAGCTTCGTTGCTCGCTGGGAGAATGAGGAGGGGGAGAGGGGCAGGGTGGTGACCCCATCGCCTGCCCTTGCAGGCGCGGGTGCGGCGCTGCACGCGCGGGTGCATGGCGTTGCATCGCGCGGGCCTGGCTGAGCAGCGAAGCTCAAATCGAGCGCTCCTGCTCAGCCTGGCTCACGGGGCTTTTTTGCATCCACTCGGCCAGGCTGGGAGCTACGTGCAGGCAACCAAACGACCACATAGTGCATCCACGCATTCGAGCCAAGGACTATGCAGGCAACCAAACACACCTAGCATCCCTCACCCTGCTGACAACAAAGTCAACATAAGAGTTCAGACTACAGGGGATCCAGCCATTGATGTATTCAAGGATGGTTTACAGGACTTGATAGTCATGTGCCAACATGTTAGAGGGACTTTTGACAATGCAGTGGTAGATTTTAGATCAAAGGTACCTGCTCAGCAAATGGACATAGATTCAAAGTAGAAATGAAATTTCCGTATGCCCTCTGCTCCATTGTTTTCCATCAGAACTTTGTGTAACCAGTTCATTATTGGAACGTTGATTAGGTGTGATTCTTGGCTATAAGGCGATTTTACTAGAAATCTGCTTTGACTGAGTTGTGGAAAGTCAGTGCTCTGCTTTTCAATTTTTGGAAAATCAGTCTATGTACTAAAACTAGCC]




>consensus_10266#0
AAGGTAGACCGCGGTGTACTAATCTACCATTAGTAGATACTACAGCGACTTCTTTATTAC
GAAAGAAAAAAGAAAGCGAAAAAACGAGAGAGGAAAAAGGAAAGGGGATCGGCGTTGCGT
CGTCGCCTTCAGCAACTCTCCGCTCGCCGCCGCCGATGCGCGCCTGTCGCTCCCCTCCGC
CCGCCGCCGGTGCGCCCATCTTCCTGTCGCTCCCCTCCCCCTGCTGCTCGTCACTCCTCC
CATCTCCCCGCGCTTCTTCCCTTTGCCCGTCGCTCGCTGCATCAGATCTGGATCGGAGGC
TGGTGACAGAAGGTGGGAGACGACGGTGGCCGGCGATTGAAGGTCGGGGGACGGCGGGAA
GAAGAGGAGGGATGCAGCAGCAAGACGGATCCGCCTAGGGGCTCGTCGTTGTGGCCCCCG
TCGAGCTTCGTCGCCTTTGAGCTGTTCGCTGCTGCTTCGCCATGTCCGTAGCTTCGTTGC
TCGCTGGGAGAATGAGGAGGGGGAGAGGGGCAGGGTGGTGACCCCATCGCCTGCCCTTGC
AGGCGCGGGTGCGGCGCTGCACGCGCGGGTGCATGGCGTTGCATCGCGCGGGCCTGGCTG
AGCAGCGAAGCTCAAATCGAGCGCTCCTGCTCAGCCTGGCTCACGGGGCTTTTTTGCATC
CACTCGGCCAGGCTGGGAGCTACGTGCAGGCAACCAAACGACCACATAGTGCATCCACGC
ATTCGAGCCAAGGACTATGCAGGCAACCAAACACACCTAGCATCCCTCACCCTGCTGACA
ACAAAGTCAACATAAGAGTTCAGACTACAGGGGATCCAGCCATTGATGTATTCAAGGATG
GTTTACAGGACTTGATAGTCATGTGCCAACATGTTAGAGGGACTTTTGACAATGCAGTGG
TAGATTTTAGATCAAAGGTACCTGCTCAGCAAATGGACATAGATTCAAAGTAGAAATGAA
ATTTCCGTATGCCCTCTGCTCCATTGTTTTCCATCAGAACTTTGTGTAACCAGTTCATTA
TTGGAACGTTGATTAGGTGTGATTCTTGGCTATAAGGCGATTTTACTAGAAATCTGCTTT
GACTGAGTTGTGGAAAGTCAGTGCTCTGCTTTTCAATTTTTGGAAAATCAGTCTATGTAC
TAAAACTAGCC

consensusID : consensus_10266#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 617
fasta sequence

                              [CGCCACCGACCCGCCGGCGCAGTGCGGCACCCACCGGCAAGGAGAAGCCATCATGGAGCATGGGTCGGTGACGGACTCGACGGCCTCGACGTTCTCCATCGTGGAGGAGGATCACACGCTCGCCAACTCCGTTAGATTTGTTCTTAATCAGGACCCAAGGGTAGCATTCTGTGGATACAGTATCCCTCATCCTGCTGACAACAAAGTCAACATAAGAGTTCAGACTACAGGAGACCCAGCAAAGGATGTTCTGAAAGACTCTTTGCAGGATTTGATGGTGATGTGCCAGCATGTAAGGGGGACATTTGACACTGCAGTGACTCAATTTCGGCAGAACAATCCTACAGGCATGAACATCGATCAGAACAAAAAGAAGTAGCTTCTGGGTGGTCTTCGC-TGCATGGCAACAATTTGCCCAGACATTTTCTATGTAATCGACCAATTAGTTGGTCTATTTGATATGAATGCTCCCTGTATCCATTGTAAGAAATGCTATTATAACACAACGGGACTTGCATTCATACTTCAGTTTTCATGGTCAATGGACATCTCGGTCATTTATCCTGTTTAGCGATGTATGTTGCCTGGATAACATTTTTTTTACAAATGAACATTGA]

[+] EMBL AK121912             [CGCCACCGACCCGCCGGCGCAGTGCGGCACCCACCGGCAAGGAGAAGCCATCATGGAGCATGGGTCGGTGACGGACTCGACGGCCTCGACGTTCTCCATCGTGGAGGAGGATCACACGCTCGCCAACTCCGTTAGATTTGTTCTTAATCAGGACCCAAGGGTAGCATTCTGTGGATACAGTATCCCTCATCCTGCTGACAACAAAGTCAACATAAGAGTTCAGACTACAGGAGACCCAGCAAAGGATGTTCTGAAAGACTCTTTGCAGGATTTGATGGTGATGTGCCAGCATGTAAGGGGGACATTTGACACTGCAGTGACTCAATTTCGGCAGAACAATCCTACAGGCATGAACATCGATCAGAACAAAAAGAAGTAGCTTCTGGGTGGTCTTCGC TGCATGGCAACAATTTGCCCAGACATTTTCTATGTAATCGACCAATTAGTTGGTCTATTTGATATGAATGCTCCCTGTATCCATTGTAAGAAATGCTATTATATCACAACGGGACTTGCATTCATACTTCAGTTTTCATGGTCAATGGACATCTCGGTCATTTATCCTGTTTAGCGATGTATGTTGCCTGGATAACATTTTTTTTACAAATGAACATTGA]
[+] EMBL AU101603             [          CCGCCGGCGCAGTGCGGCACCCACCGGCAAGGAGAAGCCATCATGGAGCATGGGTCGGTGACGGACTCGACGGCCTCGACGTTCTCCATCGTGGAGGAGGATCACACGCTCGCCAACTCCGTTAGATTTGTTCTTAATCAGGACCCAAGGGTAGCATTCTGTGGATACAGTATCCCTCATCCTGCTGACAACAAAGTCAACATAAGAGTTCAGACTACAGGAGACCCAGCAAAGGATGTTCTGAAAGACTCTTTGCAGGATTTGATGGTGATGTGCCAGCATGTAAGGGGGACATTTGACACTGCAGTGACTCAATTTCGGCAGAACAATCCTACAGGCATGAACATCGATCAGAACAAAAAGAAGTAGCTTCTGGGTGGTCTTCGCTTGCATGGCAACAATTTGCCCAGACATTTTCTATGTAATCGACCAATTAGTTGGTCTATTTGATATGAATGCTCCtgn                                                                                                                                               ]
[+] EMBL AU101604             [           CGCCGGCGCAGT CGGCACCCACCGGCAAGGAGAAGCCATCATGGAGCATGGGTCGGTGACGGACTCGACGGCCTCGACGTTCTCCATCGTGGAGGAGGATCACACGCTCGCCAACTCCGTTAGATTTGTTCTTAATCAGGACCCAAGGGTAGCATTCTGTGGATACAGTATCCCTCATCCTGCTGACAACAAAGTCAACATAAGAGTTCAGACTACAGGAGACCCAGCAAAGGATGTTCTGAAAGACTCTTTGCAGGATTTGATGGTGATGTGCCAGCATGTAAGGGGGACATTTGACACTGCAGTGACTCAATTTCGGCAGAACAATCCTACAGGCATGAACATCGATCAGAACAAAAAGAAGTAGCTTCTGGGTGGTCTTCGC TGCATGGCAACAATTTGCCCAGACATTTTCTATGTAATCGACCAATTAGTTGGTCTATTTGATATGAATGCTCCCTGTATCCATTGTAAGAAATGCTATTATAACACAACGGGACTTGCATTCATACTTCAGTTTTCATGGTCAATGGACATCTCGGTCATTTAaaaaaa                                                  ]
[+] EMBL CB000463             [                                                                                                     TGGAGGAGGATCACACGCTCGCCAACTCCGTCCCATTTGTTCTTAATCAGGACCCAAGGGTAGCATTCTGTGGATACAGTATCCCTCATCCTGCTGACAACAAAGTCAACATAAGAGTTCAGACTACAGGAGACCCAGCAAAGGATGTTCTGAAAGACTCTTTGCAGGATTTGATGGTGATGTGCCAGCATGTAAGGGGGACATTTGACACTGCAGTGACTCAATTTCGGCAGAACAATCCTACAGGCATGAACATCGATCAGAACAAAAAGAAGTAGCTTCTGGGTGGTCTTCGC TGCATGGCAACAATTTGCCCAGACATTTTCTATGTAATCGACCAATTAGTTGGTCTATTTGATATGAATGCTCCCTGTATCCATTGTAAGAAATGCTATTATAACACAACGGGACTTGCATTCATACTTCAGTTTTCATGGTCAATGGACATCTCGGTCATTTATCCTGTTTAaaaaaaaaa                                      ]
[+] EMBL CA998273             [                                                                                                      GGAGGAGGATCACACGCTCGCCAACTCCGTTAGATTTGTTCTTAATCAGGACCCAAGGGTAGCATTCTGTGGATACAGTATCCCTCATCCTGCTGACAACAAAGTCAACATAAGAGTTCAGACTACAGGAGACCCAGCAAAGGATGTTCTGAAAGACTCTTTGCAGGATTTGATGGTGATGTGCCAGCATGTAAGGGGGACATTTGACACTGCAGTGACTCAATTTCGGCAGAACAATCCTACAGGCATGAACATCGATCAGAACAAAAAGAAGTAGCTTCTGGGTGGTCTTCGC TGCATGGCAACAATTTGCCCAGACATTTTCTATGTAATCGACCAATTAGTTGGTCTATTTGATATGAATGCTCCCTGTATCCATTGTAAGAAATGCTATTATAACACAACGGGACTTGCATTCATACTTCAGGTTTCATGGTC                                                                             ]




>consensus_10266#1
CGCCACCGACCCGCCGGCGCAGTGCGGCACCCACCGGCAAGGAGAAGCCATCATGGAGCA
TGGGTCGGTGACGGACTCGACGGCCTCGACGTTCTCCATCGTGGAGGAGGATCACACGCT
CGCCAACTCCGTTAGATTTGTTCTTAATCAGGACCCAAGGGTAGCATTCTGTGGATACAG
TATCCCTCATCCTGCTGACAACAAAGTCAACATAAGAGTTCAGACTACAGGAGACCCAGC
AAAGGATGTTCTGAAAGACTCTTTGCAGGATTTGATGGTGATGTGCCAGCATGTAAGGGG
GACATTTGACACTGCAGTGACTCAATTTCGGCAGAACAATCCTACAGGCATGAACATCGA
TCAGAACAAAAAGAAGTAGCTTCTGGGTGGTCTTCGCTGCATGGCAACAATTTGCCCAGA
CATTTTCTATGTAATCGACCAATTAGTTGGTCTATTTGATATGAATGCTCCCTGTATCCA
TTGTAAGAAATGCTATTATAACACAACGGGACTTGCATTCATACTTCAGTTTTCATGGTC
AATGGACATCTCGGTCATTTATCCTGTTTAGCGATGTATGTTGCCTGGATAACATTTTTT
TTACAAATGAACATTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10266#0      AAGGTAGACCGCGGTGTACTAATCTACCATTAGTAGATACTACAGCGACTTCTTTATTAC 60
consensus_10266#1      ------------------------------------------------------------
                                                                                   

consensus_10266#0      GAAAGAAAAAAGAAAGCGAAAAAACGAGAGAGGAAAAAGGAAAGGGGATCGGCGTTGCGT 120
consensus_10266#1      ------------------------------------------------------------
                                                                                   

consensus_10266#0      CGTCGCCTTCAGCAACTCTCCGCTCGCCGCCGCCGATGCGCGCCTGTCGCTCCCCTCCGC 180
consensus_10266#1      ------------------------------------------------------------
                                                                                   

consensus_10266#0      CCGCCGCCGGTGCGCCCATCTTCCTGTCGCTCCCCTCCCCCTGCTGCTCGTCACTCCTCC 240
consensus_10266#1      ------------------------------------------------------------
                                                                                   

consensus_10266#0      CATCTCCCCGCGCTTCTTCCCTTTGCCCGTCGCTCGCTGCATCAGATCTGGATCGGAGGC 300
consensus_10266#1      ------------------------------------------------------------
                                                                                   

consensus_10266#0      TGGTGACAGAAGGTGGGAGACGACGGTGGCCGGCGATTGAAGGTCGGGGGACGGCGGGAA 360
consensus_10266#1      ------------------------------------------------------------
                                                                                   

consensus_10266#0      GAAGAGGAGGGATGCAGCAGCAAGACGGATCCGCCTAGGGGCTCGTCGTTGTGGCCCCCG 420
consensus_10266#1      ------------------------------------------------------------
                                                                                   

consensus_10266#0      TCGAGCTTCGTCGCCTTTGAGCTGTTCGCTGCTGCTTCGCCATGTCCGTAGCTTCGTTGC 480
consensus_10266#1      ------------------------------------------------------------
                                                                                   

consensus_10266#0      TCGCTGGGAGAATGAGGAGGGGGAGAGGGGCAGGGTGGTGACCCCATCGCCTGCCCTTGC 540
consensus_10266#1      ------------------------------------------------------------
                                                                                   

consensus_10266#0      AGGCGCGGGTGCGGCGCTGCACGCGCGGGTGCATGGCGTTGCATCGCGCGGGCCTGGCTG 600
consensus_10266#1      -------------------------------------------CGCCACCGACCCGCCGG 17
                                                                     * * * ** * * *

consensus_10266#0      AGCAGCGAAGCTCAAATCGAGCGCTCCTGCTCAGCCTGGCTCACGGGGCTTTTTTGCATC 660
consensus_10266#1      CGCAGTGCGGCACCCACCGGCAAGGAGAAGCCATCATGGAGCATGGGTCGGTGACGGACT 77
                        **** *  ** *  * **            ** * ***  ** *** *  *   * *  

consensus_10266#0      CACTCGGCCAGGCTGGGAGCTACGTGCAGGCA-ACCAAACGACCACATAGTGCATCC-AC 718
consensus_10266#1      CGACGGCCTCGACGTTCTCCATCGTGGAGGAGGATCACACGCTCGCCAACTCCGTTAGAT 137
                       *    * *  * *      *  **** ***   * ** ***  * *  * * * *   * 

consensus_10266#0      GCATTCG-AGCCAAGGACTATGCAGGCAACCAAACACACCTAGCATCCCTCACCCTGCTG 777
consensus_10266#1      TTGTTCTTAATCAGGACCCAAGGGTAGCATTCTGTGGATACAGTATCCCTCATCCTGCTG 197
                          ***  *  ** *  * * *      *        *   ** ******** *******

consensus_10266#0      ACAACAAAGTCAACATAAGAGTTCAGACTACAGGGGATCCAGCCATTGATGTATTCAAGG 837
consensus_10266#1      ACAACAAAGTCAACATAAGAGTTCAGACTACAGGAGACCCAGCAAAGGATGTTCTGAAAG 257
                       ********************************** ** ***** *  *****  * ** *

consensus_10266#0      ATGGTTTACAGGACTTGATAGTCATGTGCCAACATGTTAGAGGGACTTTTGACAATGCAG 897
consensus_10266#1      ACTCTTTGCAGGATTTGATGGTGATGTGCCAGCATGTAAGGGGGACATTTGACACTGCAG 317
                       *   *** ***** ***** ** ******** ***** ** ***** ******* *****

consensus_10266#0      TGGTAGATTTTAGATCAAAGGTACCTGCTCAGCAAATGGACATAGATTCAAAGTAGAA-A 956
consensus_10266#1      TGACTCAATTTCGGCAGAACAATCCTAC---AGGCATGAACATCGATCAGAACAAAAAGA 374
                       **    * *** *    **    *** *       *** **** ***   **  * ** *

consensus_10266#0      TGAAATTTCCGTATGCCCTCTGCTCCATTGTTT---TCCATCAGAACTTTGTGTAACCAG 1013
consensus_10266#1      AGTAGCTTCTGGGTGGTCTTCGCTGCATGGCAACAATTTGCCCAGACATTTTCTATGTAA 434
                        * *  *** *  **  **  *** *** *      *    *   ** ** * **   * 

consensus_10266#0      TTCATTA-TTGGAACGTTGATTAGGTGTGATTCTTGGCTATAAGGCGATTTTACTAGAAA 1072
consensus_10266#1      TCGACCAATTAGTTGGTCTATTTGATATGAATGCTCCCTGTA--TCCATTGTA--AGAAA 490
                       *  *  * ** *   **  *** * * *** *  *  ** **   * *** **  *****

consensus_10266#0      T-CTGCTTTGACTGAGTTGTGGAAA-GTCAGTGCTCTGCTTTTCA--ATTTTTGGAAAAT 1128
consensus_10266#1      TGCTATTATAACACAACGGGACTTGCATTCATACTTCAGTTTTCATGGTCAATGGACATC 550
                       * **  * * **  *   *        *   * **    ******   *   **** *  

consensus_10266#0      CAGTCTATGTACTAAAACTAGCC------------------------------------- 1151
consensus_10266#1      TCGGTCATTTATCCTGTTTAGCGATGTATGTTGCCTGGATAACATTTTTTTTACAAATGA 610
                         *   ** **       ****                                      

consensus_10266#0      -------
consensus_10266#1      ACATTGA 617