These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10266#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1151 fasta sequence [AAGGTAGACCGCGGTGTACTAATCTACCATTAGTAGATACTACAGCGACTTCTTTATTACGAAAGAAAAAAGAAAGCGAAAAAACGAGAGAGGAAAAAGGAAAGGGGATCGGCGTTGCGTCGTCGCCTTCAGCAACTCTCCGCTCGCCGCCGCCGATGCGCGCCTGTCGCTCCCCTCCGCCCGCCGCCGGTGCGCCCATCTTCCTGTCGCTCCCCTCCCCCTGCTGCTCGTCACTCCTCCCATCTCCCCGCGCTTCTTCCCTTTGCCCGTCGCTCGCTGCATCAGATCTGGATCGGAGGCTGGTGACAGAAGGTGGGAGACGACGGTGGCCGGCGATTGAAGGTCGGGGGACGGCGGGAAGAAGAGGAGGGATGCAGCAGCAAGACGGATCCGCCTAGGGGCTCGTCGTTGTGGCCCCCGTCGAGCTTCGTCGCCTTTGAGCTGTTCGCTGCTGCTTCGCCATGTCCGTAGCTTCGTTGCTCGCTGGGAGAATGAGGAGGGGGAGAGGGGCAGGGTGGTGACCCCATCGCCTGCCCTTGCAGGCGCGGGTGCGGCGCTGCACGCGCGGGTGCATGGCGTTGCATCGCGCGGGCCTGGCTGAGCAGCGAAGCTCAAATCGAGCGCTCCTGCTCAGCCTGGCTCACGGGGCTTTTTTGCATCCACTCGGCCAGGCTGGGAGCTACGTGCAGGCAACCAAACGACCACATAGTGCATCCACGCATTCGAGCCAAGGACTATGCAGGCAACCAAACACACCTAGCATCCCTCACCCTGCTGACAACAAAGTCAACATAAGAGTTCAGACTACAGGGGATCCAGCCATTGATGTATTCAAGGATGGTTTACAGGACTTGATAGTCATGTGCCAACATGTTAGAGGGACTTTTGACAATGCAGTGGTAGATTTTAGATCAAAGGTACCTGCTCAGCAAATGGACATAGATTCAAAGTAGAAATGAAATTTCCGTATGCCCTCTGCTCCATTGTTTTCCATCAGAACTTTGTGTAACCAGTTCATTATTGGAACGTTGATTAGGTGTGATTCTTGGCTATAAGGCGATTTTACTAGAAATCTGCTTTGACTGAGTTGTGGAAAGTCAGTGCTCTGCTTTTCAATTTTTGGAAAATCAGTCTATGTACTAAAACTAGCC] [-] EMBL CA756062 [AAGGTAGACCGCGGTGTACTAATCTACCATTAGTAGATACTACAGCGACTTCTTTATTACGAAAGAAAAAAGAAAGCGAAAAAACGAGAGAGGAAAAAGGAAAGGGGATCGGCGTTGCGTCGTCGCCTTCAGCAACTCTCCGCTCGCCGCCGCCGATGCGCGCCTGTCGCTCCCCTCCGCCCGCCGCCGGTGCGCCCATCTTCCTGTCGCTCCCCTCCCCCTGCTGCTCGTCACTCCTCCCATCTCCCCGCGCTTCTTCCCTTTGCCCGTCGCTCGCTGCATCAGATCTGGATCGGAGGCTGGTGACAGAAGGTGGGAGACGACGGTGGCCGGCGATTGAAGGTCGGGGGACGGCGGGAAGAAGAGGAGGGATGCAGCAGCAAGACGGATCCGCCTAGGGGCTCGTCGTTGTGGCCCCCGTCGA ] [+] EMBL AK070936 [ AAAGGAAAGGGGATCGGCGTTGCGTCGTCGCCTTCAGCAACTCTCCGCTCGCCGCCGCCGATGCGCGCCTGTCGCTCCCCTCCGCCCGCCGCCGGTGCGCCCATCTTCCTGTCGCTCCCCTCCCCCTGCTGCTCGTCACTCCTCCCATCTCCCCGCGCTTCTTCCCTTTGCCCGTCGCTCGCTGCATCAGATCTGGATCGGAGGCTGGTGACAGAAGGTGGGAGACGACGGTGGCCGGCGATTGAAGGTCGGGGGACGGCGGGAAGAAGAGGAGGGATGCAGCAGCAAGACGGATCCGCCTAGGGGCTCGTCGTTGTGGCCCCCGTCGAGCTTCGTCGCCTTTGAGCTGTTCGCTGCTGCTTCGCCATGTCCGTAGCTTCGTTGCTCGCTGGGAGAATGAGGAGGGGGAGAGGGGCAGGGTGGTGACCCCATCGCCTGCCCTTGCAGGCGCGGGTGCGGCGCTGCACGCGCGGGTGCATGGCGTTGCATCGCGCGGGCCTGGCTGAGCAGCGAAGCTCAAATCGAGCGCTCCTGCTCAGCCTGGCTCACGGGGCTTTTTTGCATCCACTCGGCCAGGCTGGGAGCTACGTGCAGGCAACCAAACGACCACATAGTGCATCCACGCATTCGAGCCAAGGACTATGCAGGCAACCAAACACACCTAGCATCCCTCACCCTGCTGACAACAAAGTCAACATAAGAGTTCAGACTACAGGGGATCCAGCCATTGATGTATTCAAGGATGGTTTACAGGACTTGATAGTCATGTGCCAACATGTTAGAGGGACTTTTGACAATGCAGTGGTAGATTTTAGATCAAAGGTACCTGCTCAGCAAATGGACATAGATTCAAAGTAGAAATGAAATTTCCGTATGCCCTCTGCTCCATTGTTTTCCATCAGAACTTTGTGTAACCAGTTCATTATTGGAACGTTGATTAGGTGTGATTCTTGGCTATAAGGCGATTTTACTAGAAATCTGCTTTGACTGAGTTGTGGAAAGTCAGTGCTCTGCTTTTCAATTTTTGGAAAATCAGTCTATGTACTAAAACTAGCC] consensusID : consensus_10266#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 617 fasta sequence [CGCCACCGACCCGCCGGCGCAGTGCGGCACCCACCGGCAAGGAGAAGCCATCATGGAGCATGGGTCGGTGACGGACTCGACGGCCTCGACGTTCTCCATCGTGGAGGAGGATCACACGCTCGCCAACTCCGTTAGATTTGTTCTTAATCAGGACCCAAGGGTAGCATTCTGTGGATACAGTATCCCTCATCCTGCTGACAACAAAGTCAACATAAGAGTTCAGACTACAGGAGACCCAGCAAAGGATGTTCTGAAAGACTCTTTGCAGGATTTGATGGTGATGTGCCAGCATGTAAGGGGGACATTTGACACTGCAGTGACTCAATTTCGGCAGAACAATCCTACAGGCATGAACATCGATCAGAACAAAAAGAAGTAGCTTCTGGGTGGTCTTCGC-TGCATGGCAACAATTTGCCCAGACATTTTCTATGTAATCGACCAATTAGTTGGTCTATTTGATATGAATGCTCCCTGTATCCATTGTAAGAAATGCTATTATAACACAACGGGACTTGCATTCATACTTCAGTTTTCATGGTCAATGGACATCTCGGTCATTTATCCTGTTTAGCGATGTATGTTGCCTGGATAACATTTTTTTTACAAATGAACATTGA] [+] EMBL AK121912 [CGCCACCGACCCGCCGGCGCAGTGCGGCACCCACCGGCAAGGAGAAGCCATCATGGAGCATGGGTCGGTGACGGACTCGACGGCCTCGACGTTCTCCATCGTGGAGGAGGATCACACGCTCGCCAACTCCGTTAGATTTGTTCTTAATCAGGACCCAAGGGTAGCATTCTGTGGATACAGTATCCCTCATCCTGCTGACAACAAAGTCAACATAAGAGTTCAGACTACAGGAGACCCAGCAAAGGATGTTCTGAAAGACTCTTTGCAGGATTTGATGGTGATGTGCCAGCATGTAAGGGGGACATTTGACACTGCAGTGACTCAATTTCGGCAGAACAATCCTACAGGCATGAACATCGATCAGAACAAAAAGAAGTAGCTTCTGGGTGGTCTTCGC TGCATGGCAACAATTTGCCCAGACATTTTCTATGTAATCGACCAATTAGTTGGTCTATTTGATATGAATGCTCCCTGTATCCATTGTAAGAAATGCTATTATATCACAACGGGACTTGCATTCATACTTCAGTTTTCATGGTCAATGGACATCTCGGTCATTTATCCTGTTTAGCGATGTATGTTGCCTGGATAACATTTTTTTTACAAATGAACATTGA] [+] EMBL AU101603 [ CCGCCGGCGCAGTGCGGCACCCACCGGCAAGGAGAAGCCATCATGGAGCATGGGTCGGTGACGGACTCGACGGCCTCGACGTTCTCCATCGTGGAGGAGGATCACACGCTCGCCAACTCCGTTAGATTTGTTCTTAATCAGGACCCAAGGGTAGCATTCTGTGGATACAGTATCCCTCATCCTGCTGACAACAAAGTCAACATAAGAGTTCAGACTACAGGAGACCCAGCAAAGGATGTTCTGAAAGACTCTTTGCAGGATTTGATGGTGATGTGCCAGCATGTAAGGGGGACATTTGACACTGCAGTGACTCAATTTCGGCAGAACAATCCTACAGGCATGAACATCGATCAGAACAAAAAGAAGTAGCTTCTGGGTGGTCTTCGCTTGCATGGCAACAATTTGCCCAGACATTTTCTATGTAATCGACCAATTAGTTGGTCTATTTGATATGAATGCTCCtgn ] [+] EMBL AU101604 [ CGCCGGCGCAGT CGGCACCCACCGGCAAGGAGAAGCCATCATGGAGCATGGGTCGGTGACGGACTCGACGGCCTCGACGTTCTCCATCGTGGAGGAGGATCACACGCTCGCCAACTCCGTTAGATTTGTTCTTAATCAGGACCCAAGGGTAGCATTCTGTGGATACAGTATCCCTCATCCTGCTGACAACAAAGTCAACATAAGAGTTCAGACTACAGGAGACCCAGCAAAGGATGTTCTGAAAGACTCTTTGCAGGATTTGATGGTGATGTGCCAGCATGTAAGGGGGACATTTGACACTGCAGTGACTCAATTTCGGCAGAACAATCCTACAGGCATGAACATCGATCAGAACAAAAAGAAGTAGCTTCTGGGTGGTCTTCGC TGCATGGCAACAATTTGCCCAGACATTTTCTATGTAATCGACCAATTAGTTGGTCTATTTGATATGAATGCTCCCTGTATCCATTGTAAGAAATGCTATTATAACACAACGGGACTTGCATTCATACTTCAGTTTTCATGGTCAATGGACATCTCGGTCATTTAaaaaaa ] [+] EMBL CB000463 [ TGGAGGAGGATCACACGCTCGCCAACTCCGTCCCATTTGTTCTTAATCAGGACCCAAGGGTAGCATTCTGTGGATACAGTATCCCTCATCCTGCTGACAACAAAGTCAACATAAGAGTTCAGACTACAGGAGACCCAGCAAAGGATGTTCTGAAAGACTCTTTGCAGGATTTGATGGTGATGTGCCAGCATGTAAGGGGGACATTTGACACTGCAGTGACTCAATTTCGGCAGAACAATCCTACAGGCATGAACATCGATCAGAACAAAAAGAAGTAGCTTCTGGGTGGTCTTCGC TGCATGGCAACAATTTGCCCAGACATTTTCTATGTAATCGACCAATTAGTTGGTCTATTTGATATGAATGCTCCCTGTATCCATTGTAAGAAATGCTATTATAACACAACGGGACTTGCATTCATACTTCAGTTTTCATGGTCAATGGACATCTCGGTCATTTATCCTGTTTAaaaaaaaaa ] [+] EMBL CA998273 [ GGAGGAGGATCACACGCTCGCCAACTCCGTTAGATTTGTTCTTAATCAGGACCCAAGGGTAGCATTCTGTGGATACAGTATCCCTCATCCTGCTGACAACAAAGTCAACATAAGAGTTCAGACTACAGGAGACCCAGCAAAGGATGTTCTGAAAGACTCTTTGCAGGATTTGATGGTGATGTGCCAGCATGTAAGGGGGACATTTGACACTGCAGTGACTCAATTTCGGCAGAACAATCCTACAGGCATGAACATCGATCAGAACAAAAAGAAGTAGCTTCTGGGTGGTCTTCGC TGCATGGCAACAATTTGCCCAGACATTTTCTATGTAATCGACCAATTAGTTGGTCTATTTGATATGAATGCTCCCTGTATCCATTGTAAGAAATGCTATTATAACACAACGGGACTTGCATTCATACTTCAGGTTTCATGGTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10266#0 AAGGTAGACCGCGGTGTACTAATCTACCATTAGTAGATACTACAGCGACTTCTTTATTAC 60 consensus_10266#1 ------------------------------------------------------------ consensus_10266#0 GAAAGAAAAAAGAAAGCGAAAAAACGAGAGAGGAAAAAGGAAAGGGGATCGGCGTTGCGT 120 consensus_10266#1 ------------------------------------------------------------ consensus_10266#0 CGTCGCCTTCAGCAACTCTCCGCTCGCCGCCGCCGATGCGCGCCTGTCGCTCCCCTCCGC 180 consensus_10266#1 ------------------------------------------------------------ consensus_10266#0 CCGCCGCCGGTGCGCCCATCTTCCTGTCGCTCCCCTCCCCCTGCTGCTCGTCACTCCTCC 240 consensus_10266#1 ------------------------------------------------------------ consensus_10266#0 CATCTCCCCGCGCTTCTTCCCTTTGCCCGTCGCTCGCTGCATCAGATCTGGATCGGAGGC 300 consensus_10266#1 ------------------------------------------------------------ consensus_10266#0 TGGTGACAGAAGGTGGGAGACGACGGTGGCCGGCGATTGAAGGTCGGGGGACGGCGGGAA 360 consensus_10266#1 ------------------------------------------------------------ consensus_10266#0 GAAGAGGAGGGATGCAGCAGCAAGACGGATCCGCCTAGGGGCTCGTCGTTGTGGCCCCCG 420 consensus_10266#1 ------------------------------------------------------------ consensus_10266#0 TCGAGCTTCGTCGCCTTTGAGCTGTTCGCTGCTGCTTCGCCATGTCCGTAGCTTCGTTGC 480 consensus_10266#1 ------------------------------------------------------------ consensus_10266#0 TCGCTGGGAGAATGAGGAGGGGGAGAGGGGCAGGGTGGTGACCCCATCGCCTGCCCTTGC 540 consensus_10266#1 ------------------------------------------------------------ consensus_10266#0 AGGCGCGGGTGCGGCGCTGCACGCGCGGGTGCATGGCGTTGCATCGCGCGGGCCTGGCTG 600 consensus_10266#1 -------------------------------------------CGCCACCGACCCGCCGG 17 * * * ** * * * consensus_10266#0 AGCAGCGAAGCTCAAATCGAGCGCTCCTGCTCAGCCTGGCTCACGGGGCTTTTTTGCATC 660 consensus_10266#1 CGCAGTGCGGCACCCACCGGCAAGGAGAAGCCATCATGGAGCATGGGTCGGTGACGGACT 77 **** * ** * * ** ** * *** ** *** * * * * consensus_10266#0 CACTCGGCCAGGCTGGGAGCTACGTGCAGGCA-ACCAAACGACCACATAGTGCATCC-AC 718 consensus_10266#1 CGACGGCCTCGACGTTCTCCATCGTGGAGGAGGATCACACGCTCGCCAACTCCGTTAGAT 137 * * * * * * **** *** * ** *** * * * * * * * consensus_10266#0 GCATTCG-AGCCAAGGACTATGCAGGCAACCAAACACACCTAGCATCCCTCACCCTGCTG 777 consensus_10266#1 TTGTTCTTAATCAGGACCCAAGGGTAGCATTCTGTGGATACAGTATCCCTCATCCTGCTG 197 *** * ** * * * * * * ** ******** ******* consensus_10266#0 ACAACAAAGTCAACATAAGAGTTCAGACTACAGGGGATCCAGCCATTGATGTATTCAAGG 837 consensus_10266#1 ACAACAAAGTCAACATAAGAGTTCAGACTACAGGAGACCCAGCAAAGGATGTTCTGAAAG 257 ********************************** ** ***** * ***** * ** * consensus_10266#0 ATGGTTTACAGGACTTGATAGTCATGTGCCAACATGTTAGAGGGACTTTTGACAATGCAG 897 consensus_10266#1 ACTCTTTGCAGGATTTGATGGTGATGTGCCAGCATGTAAGGGGGACATTTGACACTGCAG 317 * *** ***** ***** ** ******** ***** ** ***** ******* ***** consensus_10266#0 TGGTAGATTTTAGATCAAAGGTACCTGCTCAGCAAATGGACATAGATTCAAAGTAGAA-A 956 consensus_10266#1 TGACTCAATTTCGGCAGAACAATCCTAC---AGGCATGAACATCGATCAGAACAAAAAGA 374 ** * *** * ** *** * *** **** *** ** * ** * consensus_10266#0 TGAAATTTCCGTATGCCCTCTGCTCCATTGTTT---TCCATCAGAACTTTGTGTAACCAG 1013 consensus_10266#1 AGTAGCTTCTGGGTGGTCTTCGCTGCATGGCAACAATTTGCCCAGACATTTTCTATGTAA 434 * * *** * ** ** *** *** * * * ** ** * ** * consensus_10266#0 TTCATTA-TTGGAACGTTGATTAGGTGTGATTCTTGGCTATAAGGCGATTTTACTAGAAA 1072 consensus_10266#1 TCGACCAATTAGTTGGTCTATTTGATATGAATGCTCCCTGTA--TCCATTGTA--AGAAA 490 * * * ** * ** *** * * *** * * ** ** * *** ** ***** consensus_10266#0 T-CTGCTTTGACTGAGTTGTGGAAA-GTCAGTGCTCTGCTTTTCA--ATTTTTGGAAAAT 1128 consensus_10266#1 TGCTATTATAACACAACGGGACTTGCATTCATACTTCAGTTTTCATGGTCAATGGACATC 550 * ** * * ** * * * * ** ****** * **** * consensus_10266#0 CAGTCTATGTACTAAAACTAGCC------------------------------------- 1151 consensus_10266#1 TCGGTCATTTATCCTGTTTAGCGATGTATGTTGCCTGGATAACATTTTTTTTACAAATGA 610 * ** ** **** consensus_10266#0 ------- consensus_10266#1 ACATTGA 617 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||