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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10271#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1489 fasta sequence
[TCCACCCCGTGACCTTCGCTGACACCGTCGCTTTCTCTCATCGATCAGCCATGCCTACTCTCGACGCTCGCCTCCGCCTCCCTCTCGCCGGACTATCGCCGGCGACGACCTCCTTCCCGGGATCCACCCCCAAGCCGGGCAGCCTCTCGTTCGCCCTCAGGCCGCCCTCCGCCTCCCTGTCATCCTCCGCCAGTGCCCCGGCGGCGGCGGCGCCGCCCATCGTCGTCGTGGGCTCCGCCAACGCCGACATCTACGTCGAGGTCGACCGCCTCCCGCTCGTCGGGGAGACGGTGGCGGCGCGCGCCGGCCGCAGCCTCGCGGGCGGGAAGGGCGCCAACCAGGCCGCCTGCGGGGGCCGCCTCGCGGCGGGGCCCACCTACCTCGTGGCGCGCGTCGGGGACGACGCCAACGGGCGGCTCCTCGAGGGCGCCCTCGCGGACGCCGGCGGCGTCCGCCTAGACCGCGTCGCGCGCGCGCCCGGCGCGCCCTCGGGCCACGCCGTGGTGATGCTGATGCCCGGCGGGCAGAACTCCATCATCATCGTCGGCGGCGCCAACATGGAGGGGTGGGCCTCGGGGGTCGGCTCGGACGACCTGGACCTGATCCGCCGGGCTGGCGTGCTGCTGCTGCAGCGGGAGATACCCGATTGGGTCAACGTGCAGGTTGCGCAGGCAGCAAAAGGTGCAGGTGTGCCTGTTATCTTGGACGCCGGTGGAATGGAAGCTCCTGTCCCTGGGGAACTACTGAGCCTGGTGGATATTTTTAGTCCAAATGAAACAGAGCTTGCACGTTTGACTGGGATGCCTACAGAAACATTTGAACAGATCAGTCGAGCTGCAGGAGCATGCCATAAAATGGGTGTGAAAGAAGTGCTGGTTAAACTCGGATCACAAGGATCTGCTTTATTTATTGAAGGGGGGGAGCCGATCAGGCAGCCGATAATTCCTGCCACAGAAGTTGTTGATACGACTGGTGCCGGTGACACTTTCACCTCAGCTTTTGCTGTAGCTCTAGTTGAGGGTAAACCTAAGGAAGAGTGCATGAGATTTGCTGCTGCTGCTGCATCTCTATGTGTTCAAGTAAAGGGAGCCATACCCAGCATGCCTGACCGAAAATCAGT-AATGGACCTTCTGGAATCTGTTCAGGTTGAATAACTGTAGATCTCATGATTGTTTCTCTTCAGCCTCCATTCATCCTCAATAATGGGGCGCGC-GGCCAAATTCGACGGATCCAATGAAGCTCCCATAGACCCTCATGGCCTCATCTGCTCTGCTCATCCTCCAATAATGTGACAACCTTGGAGTGGAAAAACGCATTTCCCGGGTGCCACTGCCATCCATAGTAAACGCACCCAACCCCCAAATAAAGAATGGACATTTCAC-GCATCCATCCTGTTGCTGTAGGCCACTGTAAATACAATGAACAGTTTTCACACTGCCCTGGAGCTATCAGACGGTGACACCGTGCTGTTACTAAAAAAAAAAAAAAA]
[+] EMBL AK065097 [TCCACCCCGTGACCTTCGCTGACACCGTCGCTTTCTCTCATCGATCAGCCATGCCTACTCTCGACGCTCGCCTCCGCCTCCCTCTCGCCGGACTATCGCCGGCGACGACCTCCTTCCCGGGATCCACCCCCAAGCCGGGCAGCCTCTCGTTCGCCCTCAGGCCGCCCTCCGCCTCCCTGTCATCCTCCGCCAGTGCCCCGGCGGCGGCGGCGCCGCCCATCGTCGTCGTGGGCTCCGCCAACGCCGACATCTACGTCGAGGTCGACCGCCTCCCGCTCGTCGGGGAGACGGTGGCGGCGCGCGCCGGCCGCAGCCTCGCGGGCGGGAAGGGCGCCAACCAGGCCGCCTGCGGGGGCCGCCTCGCGGCGGGGCCCACCTACCTCGTGGCGCGCGTCGGGGACGACGCCAACGGGCGGCTCCTCGAGGGCGCCCTCGCGGACGCCGGCGGCGTCCGCCTAGACCGCGTCGCGCGCGCGCCCGGCGCGCCCTCGGGCCACGCCGTGGTGATGCTGATGCCCGGCGGGCAGAACTCCATCATCATCGTCGGCGGCGCCAACATGGAGGGGTGGGCCTCGGGGGTCGGCTCGGACGACCTGGACCTGATCCGCCGGGCTGGCGTGCTGCTGCTGCAGCGGGAGATACCCGATTGGGTCAACGTGCAGGTTGCGCAGGCAGCAAAAGGTGCAGGTGTGCCTGTTATCTTGGACGCCGGTGGAATGGAAGCTCCTGTCCCTGGGGAACTACTGAGCCTGGTGGATATTTTTAGTCCAAATGAAACAGAGCTTGCACGTTTGACTGGGATGCCTACAGAAACATTTGAACAGATCAGTCGAGCTGCAGGAGCATGCCATAAAATGGGTGTGAAAGAAGTGCTGGTTAAACTCGGATCACAAGGATCTGCTTTATTTATTGAAGGGGGGGAGCCGATCAGGCAGCCGATAATTCCTGCCACAGAAGTTGTTGATACGACTGGTGCCGGTGACACTTTCACCTCAGCTTTTGCTGTAGCTCTAGTTGAGGGTAAACCTAAGGAAGAGTGCATGAGATTTGCTGCTGCTGCTGCATCTCTATGTGTTCAAGTAAAGGGAGCCATACCCAGCATGCCTGACCGAAAATCAGT AATGGACCTTCTGGAATCTGTTCAGGTTGAATAACTGTAGATCTCATGATTGTTTCTCTTCAGCCTCCATTCATCCTCAATAATGGGGCGCGC GGCCAAATTCGACGGATCCAATGAAGCTCCCATAGACCCTCATGGCCTCATCTGCTCTGCTCATCCTCCAATAATGTGACAACCTTGGAGTGGAAAAACGCATTTCCCGGGTGCCACTGCCATCCATAGTAAACGCACCCAACCCCCAAATAAAGAATGGACATTTCAC GCATCCATCCTGTTGCTGTAGGCCACTGTAAATACAATGAACAGTTTTCACACTGCCCTGGAGCTATCAGACGGTGACACCG ]
[+] EMBL CF306810 [ AACTACTGAGCCTGGTGGATATTTTTAGTCCAAATGAAACAGAGCTTGCACGTTTGACTGGGATGCCTACAGAAACATTTGAACAGATCAGTCGAGCTGCAGGAGCATGCCATAAAATGGGTGTGAAAGAAGTGCTGGTTAAACTCGGATCACAAGGATCTGCTTTATTTATTGAAGGGGGGGAGCCGATCAGGCAGCCGATAATTCCTGCCACAGAAGTTGTTGATACGACTGGTGCCGGTGACACTTTCACCTCAGCTTTTGCTGTAGCTCTAGTTGAGGGTAAACCTAACGAAGAGTGCATGAGATTTGCTGCTGCTGCTGCATCTCTATGTGTTCAAGTAAAGGGAGCCATACCCAGCATGCCTGACCGAAAATCAGT AATGGACCTTCTGGAATCTGTTCAGGTTGAATAACTGTAGATCTCAT ]
[+] EMBL CA998167 [ ATAATTCCTGCCACAGAAGTTGTTGATACGACTGGTGCCGGTGACACTTTCACCTCAGCTTTTGCTGTAGCTCTAGTTGAGGGTAAACCTAAGGAAGAGTGCATGAGATTTGCTGCTGCTGCTGCATCTCTATGTGTTCAAGTAAAGGGAGCCATACCCAGCATGCCTGACCGAAAATCAGT AATGGACCTTCTGGAATCTGTTCAGGTTGAATAACTGTAGATCTCATGATTGTTTCTCTTCAGCCTCCATTCATCCTCAATAATGGGGCGCGC GGCCAAATTCGACGGATCCAATGAAGCTCCCATAGACCCTCATGGCCTCATCTGCTCTGCTCATCCTCCAATAATGTGACAACCTTGGAGTGGAAAAACGCATTTCCCGGGTGCCACTGCCATCCATAGTAAACGCACCCAACCCCCAAATAAAGAATGGACATTTCAC GCATCCATCCTGTTGCTGTAGGCCACTGTAAATACAATGAACAGTTTTCACACTGCCCTGGAGCTATCAGACGGTGACACCGTGCTGTTACTAAAAAAAA ]
[+] EMBL AU174227 [ GCATGAGATTTGCTGCTGCTGCTGCATCTCTATGTGTTCAAGTAAAGGGAGCCATACCCAGCATGCCTGACCGAAAATCAGT AATGGACCTTCTGGAATCTGTTCAGGTTGAATAACTGTAGATCTCATGATTGTTTCTCTTCAGCCTCCATTCATCCTCAATAATGGGGCGCGC GGCCAAATTCGACGGATCCAATGAAGCTCCCATAGACCCTCATGGCCTCATCTGCTCTGCTCATCCTCCAATAATGTGACAACCTTGGAGTGGAAAAACGCATTTCCCGGGTGCCACTGCCATCCATAGTAAACGCACCCAACCCCCAAATAAAGAATGGACATTTCAC GCATCCATCCTGTTGCTGTAGGCCACTGTAAATACAATGAACAGTTTTCACACTGCCCTGGAGCTATCAGACGGTGACACCGTGCTGTTACTATAAAAAAAAA ]
[+] EMBL AU181639 [ CCTGACCGAAAATCAGTAAATGGACCTTNTGGAATCTGTTCAGGTTAAATAACTGTAGATCTCATGATTGTTTCTCTTCAGCCTCCATTCATCCTCAATAATGGGGCGCGCGGGCCAAATTCGACGGATCCAATGAAGCTCCCATAGACCCTCATGGCCTCATCTGCTCTGCTCATCCTCCAATAATGTGACAACCTTGGAGTGGAAAAACGCATTTCCCGGGTGCCACTGCCATCCATAGTAAACGCACCCAACCCCCAAATAAAGAATGGACATTTCACGGCATCCATCCTGTTGCTGTAGGCCNCTGTAAATACAATGAACAGTTTTCACACTGCCCTGGAGCTATCAGACGGTGACACCGTGCTGTTCCTAAAAAAAAAAAAAAA]
consensusID : consensus_10271#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence
[GCCATGCCTACTCTCGACGCTCGCCTCCGACTACCTCTCGACGGACTATCGCCGGCGACGACCTTCTTCCCGGGATCCACCCCCAAGCCGGGCAGACTATCGATCGACCTCAGGCCGACCTACGGCTAAATGTGATGCTCCGCCAGAGCCCCGGCGGAGGAAGAAAACCCAATAGATCAAATAAGAATAAACATCCGGCTATACATAAAATAGATAATATTTAAGTATGACTCGCC]
[+] EMBL CA758459 [GCCATGCCTACTCTCGACGCTCGCCTCCGACTACCTCTCGACGGACTATCGCCGGCGACGACCTTCTTCCCGGGATCCACCCCCAAGCCGGGCAGACTATCGATCGACCTCAGGCCGACCTACGGCTAAATGTGATGCTCCGCCAGAGCCCCGGCGGAGGAAGAAAACCCAATAGATCAAATAAGAATAAACATCCGGCTATACATAAAATAGATAATATTTAAGTATGACTCGCC]
consensusID : consensus_10271#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 194 fasta sequence
[TGCCTACTCTCGACGCTCGCCTNCGCCTCCCTCTNGCCGGACTATCGCCGGCNACGACCTCCTTCCCGGNATCCACCCCCAAGCCGGGCAGCCTCTCGTTCGCCCTCAGGCCGCCCTCCGCCTCCCTGTNATCCTCCGCCAGTNCCCCGNNGGCGGCGGCGCCCNATNNGTCGTCGTGGGCTCCGCAACGCCGA]
[+] EMBL AU068921 [TGCCTACTCTCGACGCTCGCCTNCGCCTCCCTCTNGCCGGACTATCGCCGGCNACGACCTCCTTCCCGGNATCCACCCCCAAGCCGGGCAGCCTCTCGTTCGCCCTCAGGCCGCCCTCCGCCTCCCTGTNATCCTCCGCCAGTNCCCCGNNGGCGGCGGCGCCCNATNNGTCGTCGTGGGCTCCGCAACGCCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10271#0 TCCACCCCGTGACCTTCGCTGACACCGTCGCTTTCTCTCATCGATCAGCCATGCCTACTC 60
consensus_10271#2 ---------------------------------------------------TGCCTACTC 9
consensus_10271#1 -----------------------------------------------GCCATGCCTACTC 13
*********
consensus_10271#0 TCGACGCTCGCCTCCGCCTCCCTCTCGCCGGACTATCGCCGGCGACGACCTCCTTCCCGG 120
consensus_10271#2 TCGACGCTCGCCTNCGCCTCCCTCTNGCCGGACTATCGCCGGCNACGACCTCCTTCCCGG 69
consensus_10271#1 TCGACGCTCGCCTCCGACTACCTCTCGACGGACTATCGCCGGCGACGACCTTCTTCCCGG 73
************* ** ** ***** * *************** ******* ********
consensus_10271#0 GATCCACCCCCAAGCCGGGCAGCCTCTCGTTCGCCCTCAGGCCGCCCTCCGCCTCCCTGT 180
consensus_10271#2 NATCCACCCCCAAGCCGGGCAGCCTCTCGTTCGCCCTCAGGCCGCCCTCCGCCTCCCTGT 129
consensus_10271#1 GATCCACCCCCAAGCCGGGCAGACTATCGATCGACCTCAGGCCGACCTACGGCTAAATGT 133
********************* ** *** *** ********** *** ** ** ***
consensus_10271#0 CATCCTCCGCCAGTGCCCCGGCGGCGGCGGCGCCGCCCATCG-TCGTCGTGGGCTCCGCC 239
consensus_10271#2 NATCCTCCGCCAGTNCCCCGNNGGCGGCGGCGCC-CNATNNG-TCGTCGTGGGCTCCGC- 186
consensus_10271#1 GATGCTCCGCCAGAGCCCCGGCGGAGGAAGAAAACCCAATAGATCAAATAAGAATAAACA 193
** ********* ***** ** ** * * * ** * * *
consensus_10271#0 AACGCCGACATCTACG-TCGAGGTCGACCGCCTCCCGCTCGTCGGGGAGACGGTGGCGGC 298
consensus_10271#2 AACGCCGA---------------------------------------------------- 194
consensus_10271#1 TCCGGCTATACATAAAATAGATAATATTTAAGTATGACTCGCC----------------- 236
** * *
consensus_10271#0 GCGCGCCGGCCGCAGCCTCGCGGGCGGGAAGGGCGCCAACCAGGCCGCCTGCGGGGGCCG 358
consensus_10271#2 ------------------------------------------------------------
consensus_10271#1 ------------------------------------------------------------
consensus_10271#0 CCTCGCGGCGGGGCCCACCTACCTCGTGGCGCGCGTCGGGGACGACGCCAACGGGCGGCT 418
consensus_10271#2 ------------------------------------------------------------
consensus_10271#1 ------------------------------------------------------------
consensus_10271#0 CCTCGAGGGCGCCCTCGCGGACGCCGGCGGCGTCCGCCTAGACCGCGTCGCGCGCGCGCC 478
consensus_10271#2 ------------------------------------------------------------
consensus_10271#1 ------------------------------------------------------------
consensus_10271#0 CGGCGCGCCCTCGGGCCACGCCGTGGTGATGCTGATGCCCGGCGGGCAGAACTCCATCAT 538
consensus_10271#2 ------------------------------------------------------------
consensus_10271#1 ------------------------------------------------------------
consensus_10271#0 CATCGTCGGCGGCGCCAACATGGAGGGGTGGGCCTCGGGGGTCGGCTCGGACGACCTGGA 598
consensus_10271#2 ------------------------------------------------------------
consensus_10271#1 ------------------------------------------------------------
consensus_10271#0 CCTGATCCGCCGGGCTGGCGTGCTGCTGCTGCAGCGGGAGATACCCGATTGGGTCAACGT 658
consensus_10271#2 ------------------------------------------------------------
consensus_10271#1 ------------------------------------------------------------
consensus_10271#0 GCAGGTTGCGCAGGCAGCAAAAGGTGCAGGTGTGCCTGTTATCTTGGACGCCGGTGGAAT 718
consensus_10271#2 ------------------------------------------------------------
consensus_10271#1 ------------------------------------------------------------
consensus_10271#0 GGAAGCTCCTGTCCCTGGGGAACTACTGAGCCTGGTGGATATTTTTAGTCCAAATGAAAC 778
consensus_10271#2 ------------------------------------------------------------
consensus_10271#1 ------------------------------------------------------------
consensus_10271#0 AGAGCTTGCACGTTTGACTGGGATGCCTACAGAAACATTTGAACAGATCAGTCGAGCTGC 838
consensus_10271#2 ------------------------------------------------------------
consensus_10271#1 ------------------------------------------------------------
consensus_10271#0 AGGAGCATGCCATAAAATGGGTGTGAAAGAAGTGCTGGTTAAACTCGGATCACAAGGATC 898
consensus_10271#2 ------------------------------------------------------------
consensus_10271#1 ------------------------------------------------------------
consensus_10271#0 TGCTTTATTTATTGAAGGGGGGGAGCCGATCAGGCAGCCGATAATTCCTGCCACAGAAGT 958
consensus_10271#2 ------------------------------------------------------------
consensus_10271#1 ------------------------------------------------------------
consensus_10271#0 TGTTGATACGACTGGTGCCGGTGACACTTTCACCTCAGCTTTTGCTGTAGCTCTAGTTGA 1018
consensus_10271#2 ------------------------------------------------------------
consensus_10271#1 ------------------------------------------------------------
consensus_10271#0 GGGTAAACCTAAGGAAGAGTGCATGAGATTTGCTGCTGCTGCTGCATCTCTATGTGTTCA 1078
consensus_10271#2 ------------------------------------------------------------
consensus_10271#1 ------------------------------------------------------------
consensus_10271#0 AGTAAAGGGAGCCATACCCAGCATGCCTGACCGAAAATCAGTAATGGACCTTCTGGAATC 1138
consensus_10271#2 ------------------------------------------------------------
consensus_10271#1 ------------------------------------------------------------
consensus_10271#0 TGTTCAGGTTGAATAACTGTAGATCTCATGATTGTTTCTCTTCAGCCTCCATTCATCCTC 1198
consensus_10271#2 ------------------------------------------------------------
consensus_10271#1 ------------------------------------------------------------
consensus_10271#0 AATAATGGGGCGCGCGGCCAAATTCGACGGATCCAATGAAGCTCCCATAGACCCTCATGG 1258
consensus_10271#2 ------------------------------------------------------------
consensus_10271#1 ------------------------------------------------------------
consensus_10271#0 CCTCATCTGCTCTGCTCATCCTCCAATAATGTGACAACCTTGGAGTGGAAAAACGCATTT 1318
consensus_10271#2 ------------------------------------------------------------
consensus_10271#1 ------------------------------------------------------------
consensus_10271#0 CCCGGGTGCCACTGCCATCCATAGTAAACGCACCCAACCCCCAAATAAAGAATGGACATT 1378
consensus_10271#2 ------------------------------------------------------------
consensus_10271#1 ------------------------------------------------------------
consensus_10271#0 TCACGCATCCATCCTGTTGCTGTAGGCCACTGTAAATACAATGAACAGTTTTCACACTGC 1438
consensus_10271#2 ------------------------------------------------------------
consensus_10271#1 ------------------------------------------------------------
consensus_10271#0 CCTGGAGCTATCAGACGGTGACACCGTGCTGTTACTAAAAAAAAAAAAAAA 1489
consensus_10271#2 ---------------------------------------------------
consensus_10271#1 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||