cluster # 10272

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Oryza sativa
cluster # 10272 cluster # 10272 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10272#0 length = 909 sequences # 4

consensus_10272#1 length = 582 sequences # 3

consensusID : consensus_10272#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 909
fasta sequence

                              [GCCGCCTCCCCGCGCCGAAACCCTAAAAATCCTCCTCCTCCTCCTCTTCTTCCCCCAAGAATCCTCCACACCATGCGGCCACCGAGGGGCGGCGGCGGCGGGCGCTTCGGAGGCGGAGGCGGCGGGCGGTTCGGCGGCGGTGGCGGCAGGGGTGGCCGCTTCGGTGGCGGCGGCAGGGGGGGCCGCGGCGGCGGCGGCGGGTTCCGCGACGAGGGCCCCCCGGCCGAGGTCGTCGAGGTGTCGACGTTCATGCACGCGTGCGAGGG-GGACGCGGTGACGAAGCTGACGAACGAGAAGGTGCCCTACTTCAACGCGCCCATCTACCTCCAGAACAAGACCCAGATCGGCAAGGTCGACGAGATCTTCGGCCCCATCAACGAATCCCTTTTCTCCATTAAGATGCTGGAGGGGATCATTGCAACTTCATACAGTGAAGGCGATAAGTTCTACATCGACCCCATGAAGCTTTTGCCTCTCTCACGCTTCTTGCCACAGCCAAAGGGCCAAAGTCAAGGAGGGGGCAGAGGTGGTGGCCGT---GGTGGTGGAAGAGGCGGTTTCCGTGGCCGTGGTGGTGGTGGCTTCCGTGGAAGAGGTGCGCCAAGGGGCCGTGGTGGACCTCCTAGGGGTGGAGGTCGTGGTTTCAGGGGGCGGGGCAGATTCTAGTTTCTTAGCTTAAGACCTGGTGTTTGTTGAAACATCATATCCTACATGCCCTCTGCTCAATTGAAAACATTCATGTTCTTGTAGCCTGATGTTAAGTTAGCAGAGCGTTTCCAGCTCTTCATGTGTGGAAGTTGAATCTCTATAAAACAAAGTTTTCATTTCTCTTCAGTACAAGTTATGCATTTATAGTTAATCTTTAAATTTACCGAATGCTGATTCTGACTCTTAATGGATGTTATCCTATGA]

[+] EMBL AK121986             [GCCGCCTCCCCGCGCCGAAACCCTAAAAATCCTCCTCCTCCTCCTCTTCTTCCCCCAAGAATCCTCCACACCATGCGGCCACCGAGGGGCGGCGGCGGCGGGCGCTTCGGAGGCGGAGGCGGCGGGCGGTTCGGCGGCGGTGGCGGCAGGGGTGGCCGCTTCGGTGGCGGCGGCAGGGGGGGCCGCGGCGGCGGCGGCGGGTTCCGCGACGAGGGCCCCCCGGCCGAGGTCGTCGAGGTGTCGACGTTCATGCACGCGTGCGAGGG GGACGCGGTGACGAAGCTGACGAACGAGAAGGTGCCCTACTTCAACGCGCCCATCTACCTCCAGAACAAGACCCAGATCGGCAAGGTCGACGAGATCTTCGGCCCCATCAACGAATCCCTTTTCTCCATTAAGATGCTGGAGGGGATCATTGCAACTTCATACAGTGAAGGCGATAAGTTCTACATCGACCCCATGAAGCTTTTGCCTCTCTCACGCTTCTTGCCACAGCCAAAGGGCCAAAGTCAAGGAGGGGGCAGAGGTGGTGGCCGT   GGTGGTGGAAGAGGCGGTTTCCGTGGCCGTGGTGGTGGTGGCTTCCGTGGAAGAGGTGCGCCAAGGGGCCGTGGTGGACCTCCTAGGGGTGGAGGTCGTGGTTTCAGGGGGCGGGGCAGATTCTAGTTTCTTAGCTTAAGACCTGGTGTTTGTTGAAACATCATATCCTACATGCCCTCTGCTCAATTGAAAACATTCATGTTCTTGTAGCCTGATGTTAAGTTAGCAGAGCGTTTCCAGCTCTTCATGTGTGGAAGTTGAATCTCTATAAAACAAAGTTTTCATTTCTCTTCAGTACAAGTTATGCATTTATAGTTAATCTTTAAATTTACCGAATGCTGATTCTGACTCTTAATGGATGTTATCCTATGA]
[+] EMBL AU163647             [                                 CCTCCTCCTCCTCTTCTTCCCCCAAGANTCCTCCACACCATGCGGCCACCGAGGGGCGGCGGCGGCGGGCGCTTCGGAGGCGGAGGCGGCGGGCGGTTCGGCGGCGGTGGCGGCAGGGGTGGCCGCTTCGGTGGCGGNGGCAGGGGGGGCCGCGGCGGCGCGGGCGGGTTCCGCNACGAGGGCCCCCCGGCCGAGGTCGTCNAGGTGTCGACGTTCATGCACGCTTGCAAGGGNGGACGCGGTGACGAAGCTGACGAACGAAAAGGTGCCCTACTTCAACGCGCCCATCTACCTCCAGAACAAGACCCAGATCGGCAAGGTCGACGAGATTTTCGGCCCCATCAACGAATCCCTTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CA753583             [                                                                                                                                                                                                                                     ttGTCGAGGTGTCGACGTTCATGCACGCGTGCGAGGG GGACGCGGTGACGAAGCTGACGAACGAGAAGGTGCCCTACTTCAACGCGCCCATCTACCTCCAGAACAAGACCCAGATCGGCAAGGTCGACGAGATCTTCGGCCCCATCAACGAATCCCTTTTCTCCATTAAGATGCTGGAGGGGATCATTGCAACTTCATACAGTGAAGGCGATAAGTTCTACATCGACCCCATGAAACTTCTGCCTCTCTCACGCTTCTTGCCACAGCCAAAGGGCCAAAGTCAAGGAGGGGGCAGAGGTGGTGGCCGTGGCGGTGGTGGAAGAGGTGGTGGCCGTGGCCGTGGTGGTGGTGGCTTCCGTGGAAGAGGTGCACCAAGGGGACGTGGTGGA   CCTAGGGGTGGAGGTCGTGGTTTCAGAGGGCGAGGCAGATNCTAGTTTCTTAGCTTAAGACATGGTGTTTGTAAAAACATCATATCCTACATGCCCTCTGCTCAATTGAAAACATTCATGTTCTTGTAGCCTGATATTAAGTCAGCAGAGCGCTTCCA CT TTCATGTGTGGAAG TGGATCCCTAT GGACAAAG TTTCATTTCTC TCAATCCA  TTATGC                                                                 ]
[+] EMBL OS0189A              [                                                                                                                                                                                                                                                                                                                                                                                                                      GAGGGGATCATTGCAACTTCATACAGTGAAGGCGATAAGTTCTACATCGACCCCATGAAGCTTTTGCCTCTCTCACGCTTCTTGCCACAGCCAAAGGGCCAAAGTCAAGGAGGGGGCAGAGGTGGTGGCCGT   GGTGGTGGAAGAGGCGGTTTCCGTGGCCGTGGTGGTGGTGGCTTCCGTGGAAGAGGTGCGCCAAGGGGCCGTGGTGGACCTCCTAGGGGTGGAGGTCGTGGTTTCAGGGGGCGGGGCAGATTCTAGTTTCTTAGCTTAAGACCTGGTGTTTGTTGAAACATCATATNCTACATGCCC                                                                                                                                                                                                   ]




>consensus_10272#0
GCCGCCTCCCCGCGCCGAAACCCTAAAAATCCTCCTCCTCCTCCTCTTCTTCCCCCAAGA
ATCCTCCACACCATGCGGCCACCGAGGGGCGGCGGCGGCGGGCGCTTCGGAGGCGGAGGC
GGCGGGCGGTTCGGCGGCGGTGGCGGCAGGGGTGGCCGCTTCGGTGGCGGCGGCAGGGGG
GGCCGCGGCGGCGGCGGCGGGTTCCGCGACGAGGGCCCCCCGGCCGAGGTCGTCGAGGTG
TCGACGTTCATGCACGCGTGCGAGGGGGACGCGGTGACGAAGCTGACGAACGAGAAGGTG
CCCTACTTCAACGCGCCCATCTACCTCCAGAACAAGACCCAGATCGGCAAGGTCGACGAG
ATCTTCGGCCCCATCAACGAATCCCTTTTCTCCATTAAGATGCTGGAGGGGATCATTGCA
ACTTCATACAGTGAAGGCGATAAGTTCTACATCGACCCCATGAAGCTTTTGCCTCTCTCA
CGCTTCTTGCCACAGCCAAAGGGCCAAAGTCAAGGAGGGGGCAGAGGTGGTGGCCGTGGT
GGTGGAAGAGGCGGTTTCCGTGGCCGTGGTGGTGGTGGCTTCCGTGGAAGAGGTGCGCCA
AGGGGCCGTGGTGGACCTCCTAGGGGTGGAGGTCGTGGTTTCAGGGGGCGGGGCAGATTC
TAGTTTCTTAGCTTAAGACCTGGTGTTTGTTGAAACATCATATCCTACATGCCCTCTGCT
CAATTGAAAACATTCATGTTCTTGTAGCCTGATGTTAAGTTAGCAGAGCGTTTCCAGCTC
TTCATGTGTGGAAGTTGAATCTCTATAAAACAAAGTTTTCATTTCTCTTCAGTACAAGTT
ATGCATTTATAGTTAATCTTTAAATTTACCGAATGCTGATTCTGACTCTTAATGGATGTT
ATCCTATGA

consensusID : consensus_10272#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 582
fasta sequence

                              [AANAAAAAAACCACCCCCTTAGGGNCGAATTGGNTANCCGGNACCANCNCCCACNAAGANNAAAACCCACCCNCACCCAAAAACACCNNAAAANNACANACACNGACACCNNAATACAAAAAAAAAAACCCNCNNCTACATCGACCCCATGAAGCTTTTGCCCTCTCTCACGCTTCTTNCCACAGCCAAAGGGCCAAAGTCCAAGGAGGGGGCCAGAGGTGGTGNCCGTGGTGGTGGAAGAGGCCGGTTTCCCGTGGNCCGTGGTGGTGGTGGCTTCCCGTGGAAGAGGTGCCGCCAAGGGGCCGTGGTGGACCTCCTAGGGGTGGAGGTCGTGGTTTCAGGGGGCGGGGCAGATTCTAGTTTCTTAGCTTAAGACCTGGTGTTTGTTGAAACATCATATCCTACATGCCCTCTGCTCAATTGAAAACATTCATGTTCTTGTAGCCTGATGTTAAGTTAGCAGAGCGTTTCCAGCTCTTCATGTGTGGAAGTTGAATCTCTATGGAACAAAGTTTTCATTTCTCTTCAGTACAAGTTATGCATTTATAGTTAATCTTTAAATTTACCGAAAAAAAAAAAAAA]

[+] EMBL AU089694             [AANAAAAAAACCACCCCCTTAGGGNCGAATTGGNTANCCGGNACCANCNCCCACNAAGANNAAAACCCACCCNCACCCAAAAACACCNNAAAANNACANACACNGACACCNNAATACAAAAAAAAAAACCCNCNNCTACATCGACCCCATGAAGCTTTTGCCCTCTCTCACGCTTCTTNCCACAGCCAAAGGGCCAAAGTCCAAGGAGGGGGCCAGAGGTGGTGNCCGTGGTGGTGGAAGAGGCCGGTTTCCCGTGGNCCGTGGTGGTGGTGGCTTCCCGTGGAAGAGGTGCCGCCAAGGGGCCGTGGTGGACCTCCTAGGGGTGGAGGTCGTGGTTTCAGGGGGCGGGGCAGATTCTAGTTTCTTAGCTTAAGACCTGGTGTTTGTTGAAACATCATATCCTACATGCCCTCTGCTCAATTGAAAACATTCATGTTCTTGTAGCCTGATGTTAAGTTAGCAGAGCGTTTCCAGCTCTTCATGTGTGGAAGTTGAATCTCTATGGAACAAAGTTTTCATTTCTCTTCAGTACAAGTTATGCATTTATAGTTAATCTTTAAATTTACCGAAAAAAAAAAAAAA]
[-] EMBL AW069978             [                                                                                                                                                                                                                                                                                                     GCCGAGGTACCGTGGTGGACCTCCTAGGGGTGGAGGTCGTGGTTTCAGGGGGCGGGGCAGATTCTAGTTTCTTAGCTTAAGACCCGGTGTTTGTTGAGACATCATATCCTACATGCCCTCTGCTCAATTGAAAACATTCATGTTCTTGTAGCCTGATGTTAAGTTAGCAGAGCGTTTCCAGCTCTTCATGTGTGGAAGTTGAATCTCTATGGAACAAAGTTTTCATTTC                                                            ]
[+] EMBL AU165769             [                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTCTTGTAGCCTGATGTTAAGTTAGCAGAGCGTTTCCAGCTCTTCATGTGTGGAAGTTGAATCTCTATGGAACAAAGTTTTCATTTCTCTTCAGTACAAGTTATGCATTTATAGTTAATCTTTAAAaaaaa                ]




>consensus_10272#1
AANAAAAAAACCACCCCCTTAGGGNCGAATTGGNTANCCGGNACCANCNCCCACNAAGAN
NAAAACCCACCCNCACCCAAAAACACCNNAAAANNACANACACNGACACCNNAATACAAA
AAAAAAAACCCNCNNCTACATCGACCCCATGAAGCTTTTGCCCTCTCTCACGCTTCTTNC
CACAGCCAAAGGGCCAAAGTCCAAGGAGGGGGCCAGAGGTGGTGNCCGTGGTGGTGGAAG
AGGCCGGTTTCCCGTGGNCCGTGGTGGTGGTGGCTTCCCGTGGAAGAGGTGCCGCCAAGG
GGCCGTGGTGGACCTCCTAGGGGTGGAGGTCGTGGTTTCAGGGGGCGGGGCAGATTCTAG
TTTCTTAGCTTAAGACCTGGTGTTTGTTGAAACATCATATCCTACATGCCCTCTGCTCAA
TTGAAAACATTCATGTTCTTGTAGCCTGATGTTAAGTTAGCAGAGCGTTTCCAGCTCTTC
ATGTGTGGAAGTTGAATCTCTATGGAACAAAGTTTTCATTTCTCTTCAGTACAAGTTATG
CATTTATAGTTAATCTTTAAATTTACCGAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10272#0      GCCGCCTCCCCGCGCCGAAACCCTAAAAATCCTCCTCCTCCTCCTCTTCTTCCCCCAAGA 60
consensus_10272#1      ------------------------------------------------------------
                                                                                   

consensus_10272#0      ATCCTCCACACCATGCGGCCACCGAGGGGCGGCGGCGGCGGGCGCTTCGGAGGCGGAGGC 120
consensus_10272#1      ------------------------------------------------------------
                                                                                   

consensus_10272#0      GGCGGGCGGTTCGGCGGCGGTGGCGGCAGGGGTGGCCGCTTCGGTGGCGGCGGCAGGGGG 180
consensus_10272#1      ------------------------------------------------------------
                                                                                   

consensus_10272#0      GGCCGCGGCGGCGGCGGCGGGTTCCGCGACGAGGGCCCCCCGGCCGAGGTCGTCGAGGTG 240
consensus_10272#1      ------------------------------------------------------------
                                                                                   

consensus_10272#0      TCGACGTTCATGCACGCGTGCGAGGGGGACGCGGTGACGAAGCTGACGAACGAGAAGGTG 300
consensus_10272#1      ------------------------------------------------------------
                                                                                   

consensus_10272#0      CCCTACTTCAACGCGCCCATCTACCTCCAGAACAAGACCCAGATCGGCAAGGTCGACGAG 360
consensus_10272#1      ----------AANAAAAAAACCACCCCC----TTAGGGNCGAATTGGNTAN-CCGGNACC 45
                                 *       * * *** **      **   *  ** **  *   **     

consensus_10272#0      ATCTTCGGCCCCATCAACGAATCCCTTTTCTCCATTAAGATGCTGGAGGGG--ATCATTG 418
consensus_10272#1      ANCNCCCACNAAGANNAAAACCCACCCNCACCCAAAAACACCNNAAAANNACANACACNG 105
                       * *  *  *       *  *  * *      ***  ** *      *        **  *

consensus_10272#0      -CAACTTCATACAGTGAAGGCGATAAG-TTCTACATCGACCCCATGAAGCTTTTGCC-TC 475
consensus_10272#1      ACACCNNAATACAAAAAAAAAAACCCNCNNCTACATCGACCCCATGAAGCTTTTGCCCTC 165
                        ** *   *****   **    *       *************************** **

consensus_10272#0      TCTCACGCTTCTTGCCACAGCCAAAGGGCCAAAGTC-AAGGAGGGGGC-AGAGGTGGTGG 533
consensus_10272#1      TCTCACGCTTCTTNCCACAGCCAAAGGGCCAAAGTCCAAGGAGGGGGCCAGAGGTGGTGN 225
                       ************* ********************** *********** ********** 

consensus_10272#0      CCGTGGTGGTGGAAGAGGCGG--TTTCCGTGGCC-GTGGTGGTGGTGGCTTCC-GTGGAA 589
consensus_10272#1      CCGTGGTGGTGGAAGAGGCCGGTTTCCCGTGGNCCGTGGTGGTGGTGGCTTCCCGTGGAA 285
                       ******************* *  ** ****** * ****************** ******

consensus_10272#0      GAGGTGC-GCCAAGGGGCCGTGGTGGACCTCCTAGGGGTGGAGGTCGTGGTTTCAGGGGG 648
consensus_10272#1      GAGGTGCCGCCAAGGGGCCGTGGTGGACCTCCTAGGGGTGGAGGTCGTGGTTTCAGGGGG 345
                       ******* ****************************************************

consensus_10272#0      CGGGGCAGATTCTAGTTTCTTAGCTTAAGACCTGGTGTTTGTTGAAACATCATATCCTAC 708
consensus_10272#1      CGGGGCAGATTCTAGTTTCTTAGCTTAAGACCTGGTGTTTGTTGAAACATCATATCCTAC 405
                       ************************************************************

consensus_10272#0      ATGCCCTCTGCTCAATTGAAAACATTCATGTTCTTGTAGCCTGATGTTAAGTTAGCAGAG 768
consensus_10272#1      ATGCCCTCTGCTCAATTGAAAACATTCATGTTCTTGTAGCCTGATGTTAAGTTAGCAGAG 465
                       ************************************************************

consensus_10272#0      CGTTTCCAGCTCTTCATGTGTGGAAGTTGAATCTCTATAAAACAAAGTTTTCATTTCTCT 828
consensus_10272#1      CGTTTCCAGCTCTTCATGTGTGGAAGTTGAATCTCTATGGAACAAAGTTTTCATTTCTCT 525
                       **************************************  ********************

consensus_10272#0      TCAGTACAAGTTATGCATTTATAGTTAATCTTTAAATTTACCGAATGCTGATTCTGACTC 888
consensus_10272#1      TCAGTACAAGTTATGCATTTATAGTTAATCTTTAAATTTACCGAAAAAAAAAAAAAA--- 582
                       *********************************************     *     *   

consensus_10272#0      TTAATGGATGTTATCCTATGA 909
consensus_10272#1      ---------------------