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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10290#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1695 fasta sequence
[TCAAGTCGCAAGGGGGCCGAAGGGGAGAGGAGGATCCAAACCCCAAACCCCCCCCGATCCCCACGACGCGCCGCCGCCCCGCACCGAGATGGCCGCCGGGGACGCCGCCAGGGCGCCACCGGCC-GCGGAGGCGCAGTCGCTGGTGGAGTCCTTCTGCGGCGTCACCTCCGCGACGCCCCAGGAGGCCGCCTTCTTCCTCGAGAGCCACAACTGGGCCCTCGAGTCCGCCGTCCGCTCCTTCTACGACTCCGCCGACGGCG-ACGCC-TCCGCCGCCGCCGCCGACGCGGCCGATCCGCCCCCCCGCCAGCCCCCGCCTCCCCCGCCCGCCAGCGATGGCGCCGACTCCGACGACGAGGACTACGTCGTCGGCGGCGGCGACGAGGATCAGGACGACGAGGACTACGTCGGGGATGGGGATGGGGACGGGGAGGGGGACGATGATGACGACGAGGACGCCGCCCTCGCCGCGGAGGAGGCTGCGGCGTCGGACGAGCGGAGGAGGCCGCTGAAGAGGCTGAAGAGGGGCCAAAACGCGCGTGGCGGGAGCGGCAGCGGGAAGGGGAATGTGCGGACGCTCTCCGATCTCGGCGGTGGCAAGGACAGCGCGGGGTCCGAGGACTCGGAGGACGACGAGTATAAGCCGCCGCAGGAATTATACACCGGAGGCGAAAAGAGTGGAATGGTCGTTAGAGATCGATCTAAGCGTAAAAACCGTGCGGATGAGATCTTTAAGGAAGCTAAGAGGAAGGGAGCAAAGAAAGGTTCATTTGAGGCTCGCCGGAAATCAAAGAGCTTTGCTGGGACAGGCAGACTTCTAACAGGTGAATCTGCAGAGCCTGTTGCGCCTCAGTCACCAGAAAGTATTGTCCACAACATCTATTTTTGGACCAATGGGTTCACAGTAAATGATGGTCCACTTAGAAGTTTTGATGATCCAGCAAATGCTTCCTTTTTAAAGAGCATCAAGAATTCTGAATGCCCATCTGAGCTTGAGCCAGCTGATAAGAAGTCTCAGGTGAATGTGAATCTTGTTCGGAAAGAGGAAAAGTGTCCTGAACCTGTCAAGCGCGCAGCTCCATTCCATGGAGCGGCAAAAACTCTGGGGACGCCTTCTGATAATAACTCCACACCTCCGGAGGCTACTTCTGCAGCAGCCGCTGCTTCCAGCACAGAGACCGCCTCCAAGACCGTGACGATCACAGTGGATGATTCTTTGCCATCGACCTCTCTGCAGATCAGGTTCGTGGACGGCAGCCGCATGGTCGCGCATTTCAACACGAGCCACACGATCGCGGATGTGCGGGCGTTCATCGACACAACAAGGCCAGGAGAAGCCGGTGATTACACGCTCCAGGCCGGGTTCCCCCCAAAGCCGCTCGATGACATGAGCAAGACTATCGAGGAAGCTGGCGTCGCCAACTCGGTAATCATTCAGACAGCGTAGCTTCGACAGAAAACAGTTTGTTGA-CCCCCCCTCTCTTCAACAAAGCACA--CTATCCCATCTGAAGCGTGCAAATTTCCTCCCCTATCTTTTCATGCCAAGTTTTCTTTTTCTCTTGAATCTACCCTTTTCTGCCTTCCATGGCTTCGACCAATAGCTGCTCCAGGTATGAAGAGTGTAAAACAGTGAGATCTGGGTATCTCGTCCTTATTCATCTATAGTGCTATACTTTTGCTCTAAAAAAAAAAAAAAAA]
[+] EMBL AK122074 [TCAAGTCGCAAGGGGGCCGAAGGGGAGAGGAGGATCCAAACCCCAAACCCCCCCCGATCCCCACGACGCGCCGCCGCCCCGCACCGAGATGGCCGCCGGGGACGCCGCCAGGGCGCCACCGGCC GCGGAGGCGCAGTCGCTGGTGGAGTCCTTCTGCGGCGTCACCTCCGCGACGCCCCAGGAGGCCGCCTCCTTCCTCGAGAGCCACAACTGGGCCCTCGAGTCCGCCGTCCGCTCCTTCTACGACTCCGCCGACGGCG ACGCC TCCGCCGCCGCCGCCGACGCGGCCGATCCGCCCCCCCGCCAGCCCCCGCCTCCCCCGCCCGCCAGCGATGGCGCCGACTCCGACGACGAGGACTACGTCGTCGGCGGCGGCGACGAGGATCAGGACGACGAGGACTACGTCGGGGATGGGGATGGGGACGGGGAGGGGGACGATGATGACGACGAGGACGCCGCCCTCGCCGCGGAGGAGGCTGCGGCGTCGGACGAGCGGAGGAGGCCGCTGAAGAGGCTGAAGAGGGGCCAAAACGCGCGTGGCGGGAGCGGCAGCGGGAAGGGGAATGTGCGGACGCTCTCCGATCTCGGCGGTGGCAAGGACAGCGCGGGGTCCGAGGACTCGGAGGACGACGAGTATAAGCCGCCGCAGGAATTATACACCGGAGGCGAAAAGAGTGGAATGGTCGTTAGAGATCGATCTAAGCGTAAAAACCGTGCGGATGAGATCTTTAAGGAAGCTAAGAGGAAGGGAGCAAAGAAAGGTTCATTTGAGGCTCGCCGGAAATCAAAGAGCTTTGCTGGGACAGGCAGACTTCTAACAGGTGAATCTGCAGAGCCTGTTGCGCCTCAGTCACCAGAAAGTATTGTCCACAACATCTATTTTTGGACCAATGGGTTCACAGTAAATGATGGTCCACTTAGAAGTTTTGATGATCCAGCAAATGCTTCCTTTTTAAAGAGCATCAAGAATTCTGAATGCCCATCTGAGCTTGAGCCAGCTGATAAGAAGTCTCAGGTGAATGTGAATCTTGTTCGGAAAGAGGAAAAGTGTCCTGAACCTGTCAAGCGCGCAGCTCCATTCCATGGAGCGGCAAAAACTCTGGGGACGCCTTCTGATAATAACTCCACACCTCCGGAGGCTACTTCTGCAGCAGCCGCTGCTTCCAGCACAGAGACCGCCTCCAAGACCGTGACGATCACAGTGGATGATTCTTTGCCATCGACCTCTCTGCAGATCAGGTTCGTGGACGGCAGCCGCATGGTCGCGCATTTCAACACGAGCCACACGATCGCGGATGTGCGGGCGTTCATCGACACAACAAGGCCAGGAGAAGCCGGTGATTACACGCTCCAGGCCGGGTTCCCCCCAAAGCCGCTCGATGACATGAGCAAGACTATCGAGGAAGCTGGCGTCGCCAACTCGGTAATCATTCAGACAGCGTAGCTTCGACAGAAAACAGTTTGTTGA CCCCCCCTCTCTTCAACAAAGCACA CTATCCCATCTGAAGCGTGCAAATTTCCTCCCCTATCTTTTCATGCCAAGTTTTCTTTTTCTCTTGAATCTACCCTTTTCTGCCTTCCATGGCTTCGACCAATAGCTGCTCCAGGTATGAAGAGTGTAAAACAGTGAGATCTGGGTATCTCGTCCTTATTCATCTATAGTGCTAT ]
[+] EMBL C74562 [ nGGCCGAAGGGGAGAGGAGGATCCAAACCCCANNNNCCCCCCGATCCCCACGACGCGCCGCCGCCCCGCACCGAGATGGCCGCCGGGGACGCCGCCAGGGCGCCACCGGCC GCGGAGGCGCAGTCGCTGGTGGAGTCCTTCTGCGGCGTCACNTCCGCGACGNCCCAGGAGGCCGCCTTCTTCCTCGANAGCNACAACTGGGCCCTCGAGTCCGCCGTCCGCTCCTTCTACGACTCCG ]
[+] EMBL AU029595 [ ACCCCCCCCGATCCCCACGACGCGCCGCCGCCCCGCACCGAGATGGCCGCCGGGGACGCCGCCANGGCGCCACCGGCCGGCGGAGGCGCAGTCGCTGGTGGAGTCCTTCTGCGGCGTCACCTCCGCGACGCCCCAGGAGGCCGCCTTCTTCCTCGAGAGCCACAACTGGGCCCTCGAGTCCGCCGTCCGCTCCTTCTACGACTCCGCCGACGGCGAACGCCTTCCGCCGCCGCCGCCGA ]
[-] EMBL CA760218 [ TAAGAAGTCTCAGGTGAATGTGATTCNTGTTCGGAAAGAGGAAAAGTGTCCTGAACCTGTCGAGCGCGCAGCTCCATTCCATGGAGCGGCAAAAACTCTGGGGACGCCTTCTGATAATAACTCCACACCTCCGGAGGCTACTTTTGCAGCAGCCGCTGCTTCCAGCACAGAGACCGCCTCCAAGACCGTGACGATCACAGTGGATGATTCTTTGCCATCGACCTCTCTGCAGATCAGGTTCGTGGACGGCAGCCGCATGGTCGCGCGTTTCAACACGAGCCACACGATCGCGGATGTGCGGGTGTTCATCGACACAACAAGGCCAGGAGAAGCCGGTGATTACACGCTCCAGGCCGGGTTCCCCCCAAAGCCGCTCGATGACATGAGCAAGACTATCGAGGAAGCTGGCGTCGCCAACTCGGTAATCATTCAGACAGCGTAGCTTCGACAGAAAACAGTTTGTTGACCCCCCCCTCTTTTCAACAAAGCACACTCTATCCCATTTGAAGCGTGCAAATTTCCTCCCCTATCTTTTCATGCCAAGTTTTCTTTTTCTCTTGAATCTACCCTTTTCTGCCTTCCATGGCTTCGACCAATAGCTGCTCCAGGTATGAAGAGTGTAAAACAGCGAGATCTGGGTATCTCGTCCTTATTCATCTATAGTGCTATACTTTTGCTCTAAAAAAAAAAAAAAAA]
[+] EMBL AU172954 [ TGCAGCAGCCGCTGCTTCCAGCACAGAGACCGCCTCCAAGACCGTGACGATCACAGTGGATGATTCTTTGCCATCGACCTCTCTGCAGATCAGGTTCGTGGACGGCAGCCGCATGGTCGCGCATTTCAACACGAGCCACACGATCGCGGATGTGCGGGCGTTCATCGACACAACAAGGCCAGGAGAAGCCGGTGATTACACGCTCCAGGCCGGGTTCCCCCCAAAGCCGCTCGATGACATGAGCAAGACTATCGAGGAAGCTGGCGTCGCCAACTCGGTAATCATTCAGACAGCGTAGCTTCGACAGAAAACAGTTTGTTGA CCCCCCCTCTCTTCAACAAAGCACA CTATCCCATCTGAAGCGTGCAAATTTCCTCCCCTATCTTTTCATGCCAAGTTTTCTTTTTCTCTTGAATCTACCCTTTTC ]
[+] EMBL AU058314 [ TGGTCGCGCATTTCAACACGAGCCACACGATCGCGGATGTGCGGGCGTTCATCGACACAACAAGGCCCGGAGAAGCCGGTGATTACACGCTCCAGGCCGGGTTCCCCCCAAAGCCGCTCGATGACATGAGCAAGACTATCGAGGAAGCTGGCGTCGCCAACTCGGTAATCATTCAGACAGCGTAGCTTCGACAGAAAACAGTTTGTTGA CCCCCCCTCTCTTCAACAAAGCACA CTATCCCATCTGAAGCGTGCAAATTTCCTCCCCTATCTTTTCATGCCAAGTTTTCTTTTTCTCTTGAATCTACCCTTTTCTGCCTTCCATGGCTTCGACCAATAGCTGCTCCAGGTATGAAGNGTGTAAAACAGTGAGATCTGGGTATCTCGTCCTTATTCATCTATNGTGCTATACTTTTGCTCTAAAAAAAAAAA ]
consensusID : consensus_10290#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence
[GCATGGTCGCGCATTTCAACACGAGCCACACGATCGCGGATGTNCGGGCGTTCATCGACACATCAAGGTCCAGGAGCANGCCGGTGATTACACGCTACNAGGTCCGGGTTCCCCCCAAAGCCGNTCGATGACATGAGCAAGACTATCGAGGAAGCTGGCNTCGCNAACTCGGTAATCATTCAGACAGCGTAGCTTCGACAGAAAACAGTTTGTTGACCCCCCATCTCTTCAACAAAGCACACTATCCNATTTGAAGCGTGCAAATTTCCTCCCCTATCTTTTCATGCCAAGTTTTCTTTTTCTCTTGAATCTACCCTTTTCTGCCTTCCATGGCTTCGACCAATAGCTGCTCCAGGTATGAAGAGTGTAAAACAGTGAGATCTGGGTATCTCGTCCTTATTAAAAAAAAAAAAA]
[+] EMBL AU029596 [GCATGGTCGCGCATTTCAACACGAGCCACACGATCGCGGATGTNCGGGCGTTCATCGACACATCAAGGTCCAGGAGCANGCCGGTGATTACACGCTACNAGGTCCGGGTTCCCCCCAAAGCCGNTCGATGACATGAGCAAGACTATCGAGGAAGCTGGCNTCGCNAACTCGGTAATCATTCAGACAGCGTAGCTTCGACAGAAAACAGTTTGTTGACCCCCCATCTCTTCAACAAAGCACACTATCCNATTTGAAGCGTGCAAATTTCCTCCCCTATCTTTTCATGCCAAGTTTTCTTTTTCTCTTGAATCTACCCTTTTCTGCCTTCCATGGCTTCGACCAATAGCTGCTCCAGGTATGAAGAGTGTAAAACAGTGAGATCTGGGTATCTCGTCCTTATTAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10290#0 TCAAGTCGCAAGGGGGCCGAAGGGGAGAGGAGGATCCAAACCCCAAACCCCCCCCGATCC 60
consensus_10290#1 ------------------------------------------------------------
consensus_10290#0 CCACGACGCGCCGCCGCCCCGCACCGAGATGGCCGCCGGGGACGCCGCCAGGGCGCCACC 120
consensus_10290#1 ------------------------------------------------------------
consensus_10290#0 GGCCGCGGAGGCGCAGTCGCTGGTGGAGTCCTTCTGCGGCGTCACCTCCGCGACGCCCCA 180
consensus_10290#1 ------------------------------------------------------------
consensus_10290#0 GGAGGCCGCCTTCTTCCTCGAGAGCCACAACTGGGCCCTCGAGTCCGCCGTCCGCTCCTT 240
consensus_10290#1 ------------------------------------------------------------
consensus_10290#0 CTACGACTCCGCCGACGGCGACGCCTCCGCCGCCGCCGCCGACGCGGCCGATCCGCCCCC 300
consensus_10290#1 ------------------------------------------------------------
consensus_10290#0 CCGCCAGCCCCCGCCTCCCCCGCCCGCCAGCGATGGCGCCGACTCCGACGACGAGGACTA 360
consensus_10290#1 ------------------------------------------------------------
consensus_10290#0 CGTCGTCGGCGGCGGCGACGAGGATCAGGACGACGAGGACTACGTCGGGGATGGGGATGG 420
consensus_10290#1 ------------------------------------------------------------
consensus_10290#0 GGACGGGGAGGGGGACGATGATGACGACGAGGACGCCGCCCTCGCCGCGGAGGAGGCTGC 480
consensus_10290#1 ------------------------------------------------------------
consensus_10290#0 GGCGTCGGACGAGCGGAGGAGGCCGCTGAAGAGGCTGAAGAGGGGCCAAAACGCGCGTGG 540
consensus_10290#1 ------------------------------------------------------------
consensus_10290#0 CGGGAGCGGCAGCGGGAAGGGGAATGTGCGGACGCTCTCCGATCTCGGCGGTGGCAAGGA 600
consensus_10290#1 ------------------------------------------------------------
consensus_10290#0 CAGCGCGGGGTCCGAGGACTCGGAGGACGACGAGTATAAGCCGCCGCAGGAATTATACAC 660
consensus_10290#1 ------------------------------------------------------------
consensus_10290#0 CGGAGGCGAAAAGAGTGGAATGGTCGTTAGAGATCGATCTAAGCGTAAAAACCGTGCGGA 720
consensus_10290#1 ------------------------------------------------------------
consensus_10290#0 TGAGATCTTTAAGGAAGCTAAGAGGAAGGGAGCAAAGAAAGGTTCATTTGAGGCTCGCCG 780
consensus_10290#1 ------------------------------------------------------------
consensus_10290#0 GAAATCAAAGAGCTTTGCTGGGACAGGCAGACTTCTAACAGGTGAATCTGCAGAGCCTGT 840
consensus_10290#1 ------------------------------------------------------------
consensus_10290#0 TGCGCCTCAGTCACCAGAAAGTATTGTCCACAACATCTATTTTTGGACCAATGGGTTCAC 900
consensus_10290#1 ------------------------------------------------------------
consensus_10290#0 AGTAAATGATGGTCCACTTAGAAGTTTTGATGATCCAGCAAATGCTTCCTTTTTAAAGAG 960
consensus_10290#1 ------------------------------------------------------------
consensus_10290#0 CATCAAGAATTCTGAATGCCCATCTGAGCTTGAGCCAGCTGATAAGAAGTCTCAGGTGAA 1020
consensus_10290#1 ------------------------------------------------------------
consensus_10290#0 TGTGAATCTTGTTCGGAAAGAGGAAAAGTGTCCTGAACCTGTCAAGCGCGCAGCTCCATT 1080
consensus_10290#1 ------------------------------------------------------------
consensus_10290#0 CCATGGAGCGGCAAAAACTCTGGGGACGCCTTCTGATAATAACTCCACACCTCCGGAGGC 1140
consensus_10290#1 ------------------------------------------------------------
consensus_10290#0 TACTTCTGCAGCAGCCGCTGCTTCCAGCACAGAGACCGCCTCCAAGACCGTGACGATCAC 1200
consensus_10290#1 ------------------------------------------------------------
consensus_10290#0 AGTGGATGATTCTTTGCCATCGACCTCTCTGCAGATCAGGTTCGTGGACGGCAGCCGCAT 1260
consensus_10290#1 --------------------------------------------------------GCAT 4
****
consensus_10290#0 GGTCGCGCATTTCAACACGAGCCACACGATCGCGGATGTGCGGGCGTTCATCGACACAAC 1320
consensus_10290#1 GGTCGCGCATTTCAACACGAGCCACACGATCGCGGATGTNCGGGCGTTCATCGACACATC 64
*************************************** ****************** *
consensus_10290#0 AAGG-CCAGGAG-AAGCCGGTGATTACACGCTCCAGG--CCGGGTTCCCCCCAAAGCCGC 1376
consensus_10290#1 AAGGTCCAGGAGCANGCCGGTGATTACACGCTACNAGGTCCGGGTTCCCCCCAAAGCCGN 124
**** ******* * ***************** * * ********************
consensus_10290#0 TCGATGACATGAGCAAGACTATCGAGGAAGCTGGCGTCGCCAACTCGGTAATCATTCAGA 1436
consensus_10290#1 TCGATGACATGAGCAAGACTATCGAGGAAGCTGGCNTCGCNAACTCGGTAATCATTCAGA 184
*********************************** **** *******************
consensus_10290#0 CAGCGTAGCTTCGACAGAAAACAGTTTGTTGACCCCCCCTCTCTTCAACAAAGCACACTA 1496
consensus_10290#1 CAGCGTAGCTTCGACAGAAAACAGTTTGTTGACCCCCCATCTCTTCAACAAAGCACACTA 244
************************************** *********************
consensus_10290#0 TCCCATCTGAAGCGTGCAAATTTCCTCCCCTATCTTTTCATGCCAAGTTTTCTTTTTCTC 1556
consensus_10290#1 TCCNATTTGAAGCGTGCAAATTTCCTCCCCTATCTTTTCATGCCAAGTTTTCTTTTTCTC 304
*** ** *****************************************************
consensus_10290#0 TTGAATCTACCCTTTTCTGCCTTCCATGGCTTCGACCAATAGCTGCTCCAGGTATGAAGA 1616
consensus_10290#1 TTGAATCTACCCTTTTCTGCCTTCCATGGCTTCGACCAATAGCTGCTCCAGGTATGAAGA 364
************************************************************
consensus_10290#0 GTGTAAAACAGTGAGATCTGGGTATCTCGTCCTTATTCATCTATAGTGCTATACTTTTGC 1676
consensus_10290#1 GTGTAAAACAGTGAGATCTGGGTATCTCGTCCTTATTAAAAAAAAAAAAA---------- 414
************************************* * * *
consensus_10290#0 TCTAAAAAAAAAAAAAAAA 1695
consensus_10290#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||