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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10301#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1789 fasta sequence
[ACACACACAAAAAAATCCAGAAAAAAAAACCGCACGAAAAAAAAAGAGCGCCCTCATCACGGCGAGGAATTCCCACCTCCTATCTCTCTCCTCCTCCTCCTCCTCTTCTCTCTCCACGCACAAATCTCTCTCCTCCTCCGCTCCCCCACGCCGCACGCATTGCCGCCGTGGGCTCACCGCCGGCGAGGGCGGCCGCAGAGGAGGAGGGGAGCGGCGGCGGCGGCCAACCCGGGCGGTGTGGGTAGCATGTGTGACCTTGTGGCCCGAACGGGTCGGCATCAGCAGCGGTACGAGGATGGCCGGCGGCTGGTGGCCGGATGCATACCGTTCAGGTATAGAACTAGTAATGATGAAACTTCTGATGATGAACCGAAGAAAATTGTTGAAGTTCTCATGATAAACTCTCAAAGTGGTCCAGGTCTCCTGTTTCCAAAGGTAATGTTCCCATCTGAATTAGAATCAAGAAATACATGATGATGAAAAAAATGTTTATAAATTGTGTACGCATAAGTTTGCCAAACTCTTTATGGGCGGTTAGTTTACATGAAATTGCAAGAAAAAAAATCAAATATAAATTTTGATGATTTATGATCTAAATTTGGATTGGCCTTTACTTGATATGAATTGCTATAAATTTACAAAAATTGCCTGTTTTGACATGCTACACTGAAGCGCTACTGCACTATATACCCTATACTATGAGCAACATATTGATATTTCAGTTAGCCCATAGGTGGAAAAGTGTCGCTCTTGGCATTTATCATGTTCTTTCTGCCTCTCAGATGAATCCATATGAAGTTTGAATGAAATGAGATGCAGGTGTAAACATTGCATATTAAGAAATACCAAAGTCCATTGCAAATTATGTTTTGTACTTTTTACTGATTTAGCTTGATAAGCTGGCAATGCATACATAAAGTATGTCTGAGAAATTTCTTTCACCTACTTTTCTAGATTCTGCATAACATCAGATTTTGTTTGTTGGATAAATGTTACATTACCATAGTACTAGGTGGAAATTTTGTTATCTGTGTCTTCTTGTTTCAGGGAGGATGGGAGAATGATGAAACTGTTGAGCAGGCAGCTGCTCGAGAGGCTGTAGAAGAAGCTGGAGTTCGTGGAGATATAGTGCAATTTCTGGGTTTCTACGACTTCAAAAGCAAGACGCATCAAGATGCGTGCTGCCCCGAGGGTATGTGCAGAGCCGCGGTGTTTGCGCTGCATGTGAAGGAAGAGCTGGACTCATGGCCTGAGCAGAGCACCCGCAGGAGGACCTGGTTGACAGTTCCTGAAGCCACGTCGCAGTGCCGGTATCAGTGGATGCAAGAGGCTTTGCTTACTGGCTTCTCTGACTGGCATGACAACTGGAGCAAAGGTGGCGGTGGCGACACCAACTATGACTCT-CTCTAGTTGCAGAAGGCATCCACAGGAGTTCTGGTTTTGTTTATCTTCTTTTAACTCTCCCTAGGCTCCAACTTTGCAGAATGCAATAATACAATGTACACTTGTTCTGATACTAGTAGGTGGTCTTTGACCCTTCATTGCTATCTAGCGTAGTATATCTCATCGAAGACGGGAATTCTCACAACTTTTAAGTGTCAATTCTCGTGTCTATTGTTCCCTCACCACCTATCAAGCTCAATTACTTTATCCTGGTGAGCATTTTGTACGTCACTGCTCCAGATTACGGAGCTGCATACGCTATGTATTAACTTGACCACACCTGAAATCAAAAGGTATTTCTTGGCTCGAATGAGCCACCGTGGCTAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK106765 [ACACACACAAAAAAATCCAGAAAAAAAAACCGCACGAAAAAAAAAGAGCGCCCTCATCACGGCGAGGAATTCCCACCTCCTATCTCTCTCCTCCTCCTCCTCCTCTTCTCTCTCCACGCACAAATCTCTCTCCTCCTCCGCTCCCCCACGCCGCACGCATTGCCGCCGTGGGCTCACCGCCGGCGAGGGCGGCCGCAGAGGAGGAGGGGAGCGGCGGCGGCGGCCAACCCGGGCGGTGTGGGTAGCATGTGTGACCTTGTGGCCCGAACGGGTCGGCATCAGCAGCGGTACGAGGATGGCCGGCGGCTGGTGGCCGGATGCATACCGTTCAGGTATAGAACTAGTAATGATGAAACTTCTGATGATGAACCGAAGAAAATTGTTGAAGTTCTCATGATAAACTCTCAAAGTGGTCCAGGTCTCCTGTTTCCAAAGGTAATGTTCCCATCTGAATTAGAATCAAGAAATACATGATGATGAAAAAAATGTTTATAAATTGTGTACGCATAAGTTTGCCAAACTCTTTATGGGCGGTTAGTTTACATGAAATTGCAAGAAAAAAAATCAAATATAAATTTTGATGATTTATGATCTAAATTTGGATTGGCCTTTACTTGATATGAATTGCTATAAATTTACAAAAATTGCCTGTTTTGACATGCTACACTGAAGCGCTACTGCACTATATACCCTATACTATGAGCAACATATTGATATTTCAGTTAGCCCATAGGTGGAAAAGTGTCGCTCTTGGCATTTATCATGTTCTTTCTGCCTCTCAGATGAATCCATATGAAGTTTGAATGAAATGAGATGCAGGTGTAAACATTGCATATTAAGAAATACCAAAGTCCATTGCAAATTATGTTTTGTACTTTTTACTGATTTAGCTTGATAAGCTGGCAATGCATACATAAAGTATGTCTGAGAAATTTCTTTCACCTACTTTTCTAGATTCTGCATAACATCAGATTTTGTTTGTTGGATAAATGTTACATTACCATAGTACTAGGTGGAAATTTTGTTATCTGTGTCTTCTTGTTTCAGGGAGGATGGGAGAATGATGAAACTGTTGAGCAGGCAGCTGCTCGAGAGGCTGTAGAAGAAGCTGGAGTTCGTGGAGATATAGTGCAATTTCTGGGTTTCTACGACTTCAAAAGCAAGACGCATCAAGATGCGTGCTGCCCCGAGGGTATGTGCAGAGCCGCGGTGTTTGCGCTGCATGTGAAGGAAGAGCTGGACTCATGGCCTGAGCAGAGCACCCGCAGGAGGACCTGGTTGACAGTTCCTGAAGCCACGTCGCAGTGCCGGTATCAGTGGATGCAAGAGGCTTTGCTTACTGGCTTCTCTGACTGGCATGACAACTGGAGCAAAGGTGGCGGTGGCGACACCAACTATGACTCT CTCTAGTTGCAGAAGGCATCCACAGGAGTTCTGGTTTTGTTTATCTTCTTTTAACTCTCCCTAGGCTCCAACTTTGCAGAATGCAATAATACAATGTACACTTGTTCTGATACTAGTAGGTGGTCTTTGACCCTTCATTGCTATCTAGCGTAGTATATCTCATCGAAGACGGGAATTCTCACAACTTTTAAGTGTCAATTCTCGTGTCTATTGTTCCCTCACCACCTATCAAGCTCAATTACTTTATCCTGGTGAGCATTTTGTACGTCACTGCTCCAGATTACGGAGCTGCATACGCTATGTATTAACTTGACCACACCTGAAATCAAAAGGTATTTCTTGGCTCGAATGAGCCA ]
[+] EMBL CB000553 [ AGGGAGGATGGGAGAATGATGAAACTGTTGAGCAGGCAGCTGCTCGAGAGGCTGTAGAAGAAGCTGGAGTTCGTGGAGATATAGTGCAATTTCTGGGTTTCTACGACTTCAAAAGCAAGACGCATCAAGATGCGTGCTGCCCCGAGGGTATGTGCAGAGCCGCGGTGTTTGCGCTGCATGTGAAGGAAGAGCTGGACTCATGGCCTGAGCAGAGCACCCGCAGGAGGACCTGGTTGACAGTTCCTGAAGCCACGTCGCAGTGCCGGTATCAGTGGATGCAAGAGGCTTTGCTTACTGGCTTCTCTGACTGGCATGACAACTGGAGCAAAGGTGGCGGTGGCGACACCAACTATGACTCT CTCTAGTTGCAGAAGGCATCCACAGGAGTTCTGGTTTTGTTTATCTTCTTTTAACTCTCCCTAGGCTCCAACTTTGCAGAATGCAATAATACAATGTACACTTGTTCTGATACTAGTAGGTGGTCTTTGACCCTTCATTGCTATCTAGCGTAGTATATCTCATCGAAGACGGGAATTCTCACAACTTTTAAGTGTCAATTCTCGTGTCTATTGTTCCCTCACCACCTATCAAGCTCAATTACTTTATCCTGGTGAGCATTTTGTACGTCACTGCTCCAGATTACGGAGCTGCATACGCTATGT ]
[+] EMBL CB001028 [ AGGGAGGATGAGAGAATGATGAAACTGTTGAGCAGGCAGCTGCTCGAGAGGCTGTAGAAGAAGCTGGAGTTCGTGGAGATATAGTGCAATTTCTGGGTTTCTACGACTTCAAAAGCAAGACGCATCAAGATGCGTGCTGCCCCGAGGGTATGTGCAGAGCCGCGGTGTTTGCGCTGCATGTGAAGGAAGAGCTGGACTCATGGCCTGAGCAGAGCACCCGCAGGAGGACCTGGTTGACAGTTCCTGAAGCCACGTCGCAGTGCCGGTATCAGTGGATGCAAGAGGCTTTGCTTACTGGCTTCTCTGACTGGCATGACAACTGGAGCAAAGGTGGCGGTGGCGACACCAACTATGACTCT CTCTAGTTGCAGAAGGCATCCACAGGAGTTCTGGTTTTGTTTATCTTCTTTTAACTCTCCCTAGGCTCCAACTTTGCAGAATGCAATAATACAATGTACACTTGTTCTGATACTAGTAGGTGGTCTTTGACCCTTCATTGCTATCTAGCGTAGTATATCTCATCGAAGACGGGAATTCTCACAACTTTTAAGTGTCAATTCTCGTGTCTATTGTTCCCTCACCACCTATCAAGCTCAATTACTTTATCCTGGTGAGCATTTTGTAC ]
[+] EMBL CA998986 [ AGGGAGGATGGGAGAATGATGAAACTGTTGAGCAGGCAGCTGCTCGAGAGGCTGTAGAAGAAGCTGGAGTTCGTGGAGATATAGTGCAATTTCTGGGTTTCTACGACTTCAAAAGCAAGACGCATCAAGATGCGTGCTGCCCCGAGGGTATGTGCAGAGCCGCGGTGTTTGCGCTGCATGTGAAGGAAGAGCTGGACTCATGGCCTGAGC ]
[-] EMBL CA762605 [ AGAAGAAGCTGGAGTTCGTGGAGATATAGGCCAACTTCTGGGTTTTTCGGCCTTCAAAAGCAAGCCGACTCAAGATGCTTGCTGCCCCAAGGGTATGTGAAGAGCCGCGGTGTTTGCGCTGCATTTGAAGGAAGAGCTGATCTCATGGCCTGAGCAGAGCCCCCCCAGGAGGACCTGGTTGACAGTTCCTGAAGCCAAGTCCCAGTGCCGGTATCAGTGGATGCAAGAGGCTTTGCTTACTGGCTTCTCTGGCTGGCATGACAACTGGAGCAAAGGTGGCGGTGGCGACACCAACTATGACTCT CTCTAGTTGCAAAAGGCATCCCCAGGAGTTCTGGTTTTGTTTATCTTCTTTTAACTCTCCCTAGGCTCCAACTTTGCAGAATGCAATAATACAATGTACACTTGTTCTGATACTAGTAGGTGGTCTTTGACCCTTCATTGCTATCTAGCGTAGTATATCTCATCGAAGACGGGAATTCTCACAACTTTTAAGTGTCAATTCTCGTGTCTATTGTTCCCTCACCCCCTATCAAGCTCAATTCCTTTATCCTGGTGAGCATTTTGTACGTCACTGCTCCAGATTACGGAGCTGCATACGCTATGTATTAACTTGACCCCCCCTGAAACCAAAAGGTATTTCTTGGCTCGAATGAGCCACCGTGGCTAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C71753 [ AACNGGAGCAAAGGTGCCGGT GCGACACCAACTATGACTCTCCTCTAGTTGCAGAAGGCATCCACAGGAGTTCTGGTTTTGTTTATCNTCTTTTAACTCTCCCTAGGCTCCAACTTTGCAGAATGCAATAATACAATGTACACTTGTTCTGATACTAGTAGGTGGTCTTTGACCCTTCATTGCTATCTAGCGTAGTATATCTCATCGAAGACGGGAATTCTCACAACTTTTAAGTGTCAATTCTCGTGTCTATTGTTCCCTCACCACCTATCAAGCTCAATTACTTTATCCTGGTGAGCATTTTGTACGTCACTGCTCCAGATTACGGAGCTGCATACGCTATGTATTAACTTGACCACACCTGAAATTAAAAGGTATTTCTTGGCTCGAATGAGCCACGGTGGCTn ]
consensusID : consensus_10301#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 262 fasta sequence
[GGGGAGCGGCGGCGGCGGCCAACCCGGGCGGTGTGGGTAGCATGTGTGACCTTGTGGCCCGAACGGGTCGGCATCAGCAGCGGTACGAGGATGGCCGGCGGCTGGTGGCCGGATGCATACCGTTCAGGTATAGAACTAGTAATGATGAAACTTCTGATGATGAACCGAAGAAAATTGTTGAAGTTCTCATGATAAACTCTCAAAGTGGTCCAGGTCTCCTGTTTCCAAAGGGAGGATGGGAGAATGATGAAACTGTTGAGCA]
[+] EMBL AU183588 [GGGGAGCGGCGGCGGCGGCCAACCCGGGCGGTGTGGGTAGCATGTGTGACCTTGTGGCCCGAACGGGTCGGCATCAGCAGCGGTACGAGGATGGCCGGCGGCTGGTGGCCGGATGCATACCGTTCAGGTATAGAACTAGTAATGATGAAACTTCTGATGATGAACCGAAGAAAATTGTTGAAGTTCTCATGATAAACTCTCAAAGTGGTCCAGGTCTCCTGTTTCCAAAGGGAGGATGGGAGAATGATGAAACTGTTGAGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10301#0 ACACACACAAAAAAATCCAGAAAAAAAAACCGCACGAAAAAAAAAGAGCGCCCTCATCAC 60
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 GGCGAGGAATTCCCACCTCCTATCTCTCTCCTCCTCCTCCTCCTCTTCTCTCTCCACGCA 120
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 CAAATCTCTCTCCTCCTCCGCTCCCCCACGCCGCACGCATTGCCGCCGTGGGCTCACCGC 180
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 CGGCGAGGGCGGCCGCAGAGGAGGAGGGGAGCGGCGGCGGCGGCCAACCCGGGCGGTGTG 240
consensus_10301#1 -------------------------GGGGAGCGGCGGCGGCGGCCAACCCGGGCGGTGTG 35
***********************************
consensus_10301#0 GGTAGCATGTGTGACCTTGTGGCCCGAACGGGTCGGCATCAGCAGCGGTACGAGGATGGC 300
consensus_10301#1 GGTAGCATGTGTGACCTTGTGGCCCGAACGGGTCGGCATCAGCAGCGGTACGAGGATGGC 95
************************************************************
consensus_10301#0 CGGCGGCTGGTGGCCGGATGCATACCGTTCAGGTATAGAACTAGTAATGATGAAACTTCT 360
consensus_10301#1 CGGCGGCTGGTGGCCGGATGCATACCGTTCAGGTATAGAACTAGTAATGATGAAACTTCT 155
************************************************************
consensus_10301#0 GATGATGAACCGAAGAAAATTGTTGAAGTTCTCATGATAAACTCTCAAAGTGGTCCAGGT 420
consensus_10301#1 GATGATGAACCGAAGAAAATTGTTGAAGTTCTCATGATAAACTCTCAAAGTGGTCCAGGT 215
************************************************************
consensus_10301#0 CTCCTGTTTCCAAAGGTAATGTTCCCATCTGAATTAGAATCAAGAAATACATGATGATGA 480
consensus_10301#1 CTCCTGTTTCCAAAGGGAGGATGGGAGAATGA--TGAAACTGTTGAGCA----------- 262
**************** * * *** * ** * *
consensus_10301#0 AAAAAATGTTTATAAATTGTGTACGCATAAGTTTGCCAAACTCTTTATGGGCGGTTAGTT 540
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 TACATGAAATTGCAAGAAAAAAAATCAAATATAAATTTTGATGATTTATGATCTAAATTT 600
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 GGATTGGCCTTTACTTGATATGAATTGCTATAAATTTACAAAAATTGCCTGTTTTGACAT 660
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 GCTACACTGAAGCGCTACTGCACTATATACCCTATACTATGAGCAACATATTGATATTTC 720
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 AGTTAGCCCATAGGTGGAAAAGTGTCGCTCTTGGCATTTATCATGTTCTTTCTGCCTCTC 780
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 AGATGAATCCATATGAAGTTTGAATGAAATGAGATGCAGGTGTAAACATTGCATATTAAG 840
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 AAATACCAAAGTCCATTGCAAATTATGTTTTGTACTTTTTACTGATTTAGCTTGATAAGC 900
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 TGGCAATGCATACATAAAGTATGTCTGAGAAATTTCTTTCACCTACTTTTCTAGATTCTG 960
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 CATAACATCAGATTTTGTTTGTTGGATAAATGTTACATTACCATAGTACTAGGTGGAAAT 1020
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 TTTGTTATCTGTGTCTTCTTGTTTCAGGGAGGATGGGAGAATGATGAAACTGTTGAGCAG 1080
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 GCAGCTGCTCGAGAGGCTGTAGAAGAAGCTGGAGTTCGTGGAGATATAGTGCAATTTCTG 1140
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 GGTTTCTACGACTTCAAAAGCAAGACGCATCAAGATGCGTGCTGCCCCGAGGGTATGTGC 1200
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 AGAGCCGCGGTGTTTGCGCTGCATGTGAAGGAAGAGCTGGACTCATGGCCTGAGCAGAGC 1260
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 ACCCGCAGGAGGACCTGGTTGACAGTTCCTGAAGCCACGTCGCAGTGCCGGTATCAGTGG 1320
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 ATGCAAGAGGCTTTGCTTACTGGCTTCTCTGACTGGCATGACAACTGGAGCAAAGGTGGC 1380
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 GGTGGCGACACCAACTATGACTCTCTCTAGTTGCAGAAGGCATCCACAGGAGTTCTGGTT 1440
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 TTGTTTATCTTCTTTTAACTCTCCCTAGGCTCCAACTTTGCAGAATGCAATAATACAATG 1500
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 TACACTTGTTCTGATACTAGTAGGTGGTCTTTGACCCTTCATTGCTATCTAGCGTAGTAT 1560
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 ATCTCATCGAAGACGGGAATTCTCACAACTTTTAAGTGTCAATTCTCGTGTCTATTGTTC 1620
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 CCTCACCACCTATCAAGCTCAATTACTTTATCCTGGTGAGCATTTTGTACGTCACTGCTC 1680
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 CAGATTACGGAGCTGCATACGCTATGTATTAACTTGACCACACCTGAAATCAAAAGGTAT 1740
consensus_10301#1 ------------------------------------------------------------
consensus_10301#0 TTCTTGGCTCGAATGAGCCACCGTGGCTAAAAAAAAAAAAAAAAAAAAA 1789
consensus_10301#1 -------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||