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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10306#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1117 fasta sequence
[ACTTCCATCGATCTCTCTCCTCGCCACGGGCCACGGCCTTCTCCTAACGGGAGCCATGGAAGCAGACGCGAGCCATACACCCACCACCTCCTCCTCCGTCTCCGTCTCCTTCTCCTCCTCGTCGCTGTCCACTTCCTCCTCCACCTCCTCCCTCGTCGACAATGGCGCGCAAGACCGGCCCAAGAGCTCCAAGCCCAAACACGCCGCCAAGAAGCGCAAGAGAGCGGCCGCGGAGGAACCTGCCAATGCCGCCCACGGCGCAGGGGAGGATACCAGCAGCTGCAGCACCGACGACAACGCGGCGGCGAGCGGCAAGGCGCAGGCGGGCGGCGGCGGCGGCGGCGTCGACAGCAGCAGCACCTGCACCGCCGCCTCGGCGCCGAGGAGCGGCTTCAAGCACCCGTCGTACCGCGGCGTGCGCCGCCGGAGCTGGGGGAAGTGGGTGTCGGAGATCCGGGAGCCCCGCAAGAAGTCGCGCATCTGGCTGGGTACCTTCCCCACCGCGGAGATGGCGGCGCGCGCCCACGACGTGGCCGCGCTCGCCATCAAGGGCCGGAACGCGCACCTCAACTTCCCGGACAGCGCCCACGAGCTGCCCCGCCCGGAGTCCACCTCCCCGGCAGACATCCAGGCCGCCGCCGCCAAGGCTGCCGCCGAGGTGCGGTGCGAGGAGGAGTCGTCGCCGTCGTCGTCGCCCACCGCCGAGCAACCCGAGGAGGAAGCCGCCTGCCCTGACACGGTGCACGCCGACGGCGGCCAGGACAATGCTCTCTTCGACCTACCCGACCTTCTTCTCGACCTACGGGACGGGCTCTGGTGGTCGCCGGTGTGGCCGGCGGCACTGGCGGCCGAGGAGTACGACGGCGGCGACGCCGTCGTGCTCAATGAGCCACTCTTGTGGGCCGAGTAGCCATTTTACCTTTCTGGGCTCATGAATAGGCTACAACGACAACTCTCAAGAAAGAAAGAAAAAAAAGGGAAAAATGTTATTACCGCTATATTTAGTAGTTACTGCTATTGACAAAGTTTAGTCTATGTTGTGCTTGATTAGGCCATGAAGCCTGTGTGCTTTGTGTACCAACAATCAAAAAGATCTCTCTACTAATAGAAGTTAATT]
[+] EMBL AK107119 [ACTTCCATCGATCTCTCTCCTCGCCACGGGCCACGGCCTTCTCCTAACGGGAGCCATGGAAGCAGACGCGAGCCATACACCCACCACCTCCTCCTCCGTCTCCGTCTCCTTCTCCTCCTCGTCGCTGTCCACTTCCTCCTCCACCTCCTCCCTCGTCGACAATGGCGCGCAAGACCGGCCCAAGAGCTCCAAGCCCAAACACGCCGCCAAGAAGCGCAAGAGAGCGGCCGCGGAGGAACCTGCCAATGCCGCCCACGGCGCAGGGGAGGATACCAGCAGCTGCAGCACCGACGACAACGCGGCGGCGAGCGGCAAGGCGCAGGCGGGCGGCGGCGGCGGCGGCGTCGACAGCAGCAGCACCTGCACCGCCGCCTCGGCGCCGAGGAGCGGCTTCAAGCACCCGTCGTACCGCGGCGTGCGCCGCCGGAGCTGGGGGAAGTGGGTGTCGGAGATCCGGGAGCCCCGCAAGAAGTCGCGCATCTGGCTGGGTACCTTCCCCACCGCGGAGATGGCGGCGCGCGCCCACGACGTGGCCGCGCTCGCCATCAAGGGCCGGAACGCGCACCTCAACTTCCCGGACAGCGCCCACGAGCTGCCCCGCCCGGAGTCCACCTCCCCGGCAGACATCCAGGCCGCCGCCGCCAAGGCTGCCGCCGAGGTGCGGTGCGAGGAGGAGTCGTCGCCGTCGTCGTCGCCCACCGCCGAGCAACCCGAGGAGGAAGCCGCCTGCCCTGACACGGTGCACGCCGACGGCGGCCAGGACAATGCTCTCTTCGACCTACCCGACCTTCTTCTCGACCTACGGGACGGGCTCTGGTGGTCGCCGGTGTGGCCGGCGGCACTGGCGGCCGAGGAGTACGACGGCGGCGACGCCGTCGTGCTCAATGAGCCACTCTTGTGGGCCGAGTAGCCATTTTACCTTTCTGGGCTCATGAATAGGCTACAACGACAACTCTCAAGAAAGAAAGAAAAAAAAGGGAAAAATGTTATTACCGCTATATTTAGTAGTTACTGCTATTGACAAAGTTTAGTCTATGTTGTGCTTGATTAGGCCATGAAGCCTGTGTGCTTTGTGTACCAACAATCAAAAAGATCTCTCTACTAATAGAAGTTAATT]
consensusID : consensus_10306#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1032 fasta sequence
[TCACCACACACCACGCCACTCGCCTCGCCTCGCCTCGCACAGTCGCTCGCTCGCCCGCTCTAGCTAGCTCACAGCTCGCTCACTCGCTCTCCTCTTCCAACCAACT---CCACCACCACCAGTCCACCACAGCGCGCGGCGCCATGGACGACTCGTCGTTCGGTTCCGAGCCGACCACGTCCTCCTCGGGCGGGGAGGCGCCGGCCTCCCCGCCGTCCACCGCGTCGTCGTCCTCAGACGGCGCCGGCGGCAAGAAGAAGCGGCCGCGCAAGGACGGGCACCACCCGACGTACCGCGGGGTGCGCATGCGGAGCTGGGGCAAGTGGGTGTCGGAGATCAGGGAGCCGCGGAAGAAGTCGCGCATCTGGCTGGGCACCTTCGCCACCGCCGAGATGGCCGCGCGCGCGCACGACGTCGCCGCGCTCGCCATCAAGGGCCGCGCCGCGCACCTCAACTTCCCGGACCTCGCCCACGAGCTGCCGCGCCCGGCCACCGCGGCGCCCAAGGACGTCCAGGCCGCAGCCGCGCTCGCCGCCGCCGCCGACTTCCCGGCCTCCTCCGCCAATGCGGGCGCCAGCAATAACCCCGACGGATCGGACGACGCGAGCGCCGGGTCCGCCTCGCCGCCCCCGCCGCCGGACGCCGCTGACGACGCGCTGTTCGACCTCCCCGACCTCCTCCTCGACCTCAGATACGGCCCGCCCAGCTCGGGCCTCTCGTGCGCGTCGTCTTGGGAAGACGAAGTGGGCTTAATCTCCGGCGCCGGTGCCGCCGCCGCCGGCGTGTTCCGCCTGGAGGAGCCACTTCTGTGGGAGTACTAAAAGCCAAAGCGCCGCCGGTAAAACACTCGTCAGTGCTAAAATCGAGCAGCCTGCATGTACAACCCGTAATTTTCCACGCATGACCAAAAGAATTCATGCATGCAAGCCAGCTACGGCCTACGGCGCACAGAAACTTGAGCCAAAAAATCAGCGTCGTTTTGTCCTGCGTTTGCGTCGCCAAATTTGGGAAGCAGACCATGTATAAAAAATCATC]
[+] EMBL AY346094 [TCACCACACACCACGCCACTCGCCTCGCCTCGCCTCGCACAGTCGCTCGCTCGCCCGCTCTAGCTAGCTCACAGCTCGCTCACTCGCTCTCCTCTTCCAACCAACT CCACCACCACCAGTCCACCACAGCGCGCGGCGCCATGGACGACTCGTCGTTCGGTTCCGAGCCGACCACGTCCTCCTCGGGCGGGGAGGCGCCGGCCTCCCCGCCGTCCACCGCGTCGTCGTCCTCAGACGGCGCCGGCGGCAAGAAGAAGCGGCCGCGCAAGGACGGGCACCACCCGACGTACCGCGGGGTGCGCATGCGGAGCTGGGGCAAGTGGGTGTCGGAGATCAGGGAGCCGCGGAAGAAGTCGCGCATCTGGCTGGGCACCTTCGCCACCGCCGAGATGGCCGCGCGCGCGCACGACGTCGCCGCGCTCGCCATCAAGGGCCGCGCCGCGCACCTCAACTTCCCGGACCTCGCCCACGAGCTGCCGCGCCCGGCCACCGCGGCGCCCAAGGACGTCCAGGCCGCAGCCGCGCTCGCCGCCGCCGCCGACTTCCCGGCCTCCTCCGCCAATGCGGGCGCCAGCAATAACCCCGACGGATCGGACGACGCGAGCGCCGGGTCCGCCTCGCCGCCCCCGCCGCCGGACGCCGCTGACGACGCGCTGTTCGACCTCCCCGACCTCCTCCTCGACCTCAGATACGGCCCGCCCAGCTCGGGCCTCTCGTGCGCGTCGTCTTGGGAAGACGAAGTGGGCTTAATCTCCGGCGCCGGTGCCGCCGCCGCCGGCGTGTTCCGCCTGGAGGAGCCACTTCTGTGGGAGTACTAAAAGCCAAAGCGCCGCCGGTAAAACACTCGTCAGTGCTAAAATCGAGCAGCCTGCATGTACAACCCGTAATTTTCCACGCATGACCAAAAGAATTCATGCATGCAAGCCAGCTACGGCCTACGGCGCACAGAAACTT ]
[+] EMBL AK108830 [ CACGCCACTCGCCTCGCCTCGCACAGTCGCTCGCTCGCCCGCTCTAGCTAGCTCACAGCTCGCTCACTCGCTCTCCTCTTCCAACCAACTCCACCACCACCACCAGTCCACCACAGCGCGCGGCGCCATGGACGACTCGTCGTTCGGTTCCGAGCCGACCACGTCCTCCTCGGGCGGGGAGGCGCCGGCCTCCCCGCCGTCCACCGCGTCGTCGTCCTCAGACGGCGCCGGCGGCAAGAAGAAGCGGCCGCGCAAGGACGGGCACCACCCGACGTACCGCGGGGTGCGCATGCGGAGCTGGGGCAAGTGGGTGTCGGAGATCAGGGAGCCGCGGAAGAAGTCGCGCATCTGGCTGGGCACCTTCGCCACCGCCGAGATGGCCGCGCGCGCGCACGACGTCGCCGCGCTCGCCATCAAGGGCCGCGCCGCGCACCTCAACTTCCCGGACCTCGCCCACGAGCTGCCGCGCCCGGCCACCGCGGCGCCCAAGGACGTCCAGGCCGCAGCCGCGCTCGCCGCCGCCGCCGACTTCCCGGCCTCCTCCGCCAATGCGGGCGCCAGCAATAACCCCGACGGATCGGACGACGCGAGCGCCGGGTCCGCCTCGCCGCCCCCGCCGCCGGACGCCGCTGACGACGCGCTGTTCGACCTCCCCGACCTCCTCCTCGACCTCAGATACGGCCCGCCCAGCTCGGGCCTCTCGTGCGCGTCGTCTTGGGAAGACGAAGTGGGCTTAATCTCCGGCGCCGGTGCCGCCGCCGCCGGCGTGTTCCGCCTGGAGGAGCCACTTCTGTGGGAGTACTAAAAGCCAAAGCGCCGCCGGTAAAACACTCGTCAGTGCTAAAATCGAGCAGCCTGCATGTACAACCCGTAATTTTCCACGCATGACCAAAAGAATTCATGCATGCAAGCCAGCTACGGCCTACGGCGCACAGAAACTTGAGCCAAAAAATCAGCGTCGTTTTGTCCTGCGTTTGCGTCGCCAAATTTGGGAAGCAGACCATGTATAAAAAATCATC]
consensusID : consensus_10306#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 969 fasta sequence
[ACTACTCCAGTCCACACCCGCACCACCGCGGCAGCCATGGACGACTCCCACGACCTGGCCTCCCCGACCTCCCCTGACACGGCGTCCTCGTCGTCTTCGTCTACGTCGACATCATCGTCCTCCGCCACCGTCGCCCCGAAGAAGCGGCCGCGCAACGACGGCCGGCACCCGACGTACCGCGGCGTGCGCATGCGGAGCTGGGGGAAGTGGGTGTCCGAGATCAGGGAGCCCCGCAAGAAGTCGCGCATCTGGCTGGGCACGTTCGCCACCGCGGAGATGGCCGCGCGCGCGCACGACGTGGCCGCGCTCGCCATCAAGGGCCGCACCGCGCACCTCAACTTCCCGGACCTCGCGCACCTGCTCCCGCGCCCGGCCACCGCGGCGCCCAAGGACGTGCAGGCGGCGGCGCTGCTCGCCGCCGCCGCAGCCGACTTCCCCTCCGTCTCCGTCGACGCCAATGCCAAGAGCCCCGACACCTGCTCCGTCGCCAGCGCCGCCTCGCCGCAGCCGCCACCGCCGGACGCCGAAGCGGACCCTGACAGCACGCTGTTCGACCTCCCGGACCTGCTCCTGGACCTGAGATACGAGACGTCCTCGAGCCTCTCGTGCGGGGCGTCGTGGGCCGTCGATGACGACGTGGCCGGCGGCGTCGTGTTCCGCCTCGAGGAGCCCATGCTGTGGGATTACTGATCAATGTGGCTGCTCATGGGAGCCAGTCATGCTTCCGTGTATTAGATCGATCAGTGGCTTGTACATGGCGGTGCTTCTTTTCTTCTTCTTTACTCTGCTTCTGCTCTGTTCTCTTTCTTCTTTTCTCCCTTTGTATTTTGTTTTTTTTCCTTCCATTTTTTCTTCTTTTCTTTGCCAAATCTAGCATGCGAGGTTGTATAAAGTCAGTTCCTTTTCCTCGCCTTGCTTGATTTGGGGGACAAGAATATGTATAATTAACAAGCATCTTATCTTCGACTA]
[+] EMBL AK108473 [ACTACTCCAGTCCACACCCGCACCACCGCGGCAGCCATGGACGACTCCCACGACCTGGCCTCCCCGACCTCCCCTGACACGGCGTCCTCGTCGTCTTCGTCTACGTCGACATCATCGTCCTCCGCCACCGTCGCCCCGAAGAAGCGGCCGCGCAACGACGGCCGGCACCCGACGTACCGCGGCGTGCGCATGCGGAGCTGGGGGAAGTGGGTGTCCGAGATCAGGGAGCCCCGCAAGAAGTCGCGCATCTGGCTGGGCACGTTCGCCACCGCGGAGATGGCCGCGCGCGCGCACGACGTGGCCGCGCTCGCCATCAAGGGCCGCACCGCGCACCTCAACTTCCCGGACCTCGCGCACCTGCTCCCGCGCCCGGCCACCGCGGCGCCCAAGGACGTGCAGGCGGCGGCGCTGCTCGCCGCCGCCGCAGCCGACTTCCCCTCCGTCTCCGTCGACGCCAATGCCAAGAGCCCCGACACCTGCTCCGTCGCCAGCGCCGCCTCGCCGCAGCCGCCACCGCCGGACGCCGAAGCGGACCCTGACAGCACGCTGTTCGACCTCCCGGACCTGCTCCTGGACCTGAGATACGAGACGTCCTCGAGCCTCTCGTGCGGGGCGTCGTGGGCCGTCGATGACGACGTGGCCGGCGGCGTCGTGTTCCGCCTCGAGGAGCCCATGCTGTGGGATTACTGATCAATGTGGCTGCTCATGGGAGCCAGTCATGCTTCCGTGTATTAGATCGATCAGTGGCTTGTACATGGCGGTGCTTCTTTTCTTCTTCTTTACTCTGCTTCTGCTCTGTTCTCTTTCTTCTTTTCTCCCTTTGTATTTTGTTTTTTTTCCTTCCATTTTTTCTTCTTTTCTTTGCCAAATCTAGCATGCGAGGTTGTATAAAGTCAGTTCCTTTTCCTCGCCTTGCTTGATTTGGGGGACAAGAATATGTATAATTAACAAGCATCTTATCTTCGACTA]
consensusID : consensus_10306#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 960 fasta sequence
[CTCGTGCGTCACCAATGGCACGCGAGAGAAGCGCGAGATCTCTAAGCACAAGCAGCTCAAGCGGAAGAGGAGCACCTCTCCTGCTCCTCCTCCCGGCTGCGGCGGCGGCCAAGGACAGGAAGCGGCGGTGGAGACTGACGCTGACGCTGGCGCCGCCGGCGAGGAGGAGAGCAGCAGCTGCGGTGGCGCTGGCGCCGGCGAGGGCGAGCGCAAGAGGGGTGACGCCGGCAGGCACCCGTCGTACCGCGGCGTGAGGCGGCGGAGCTGGGGCAAGTGGGTGTCGGAGATCCGCGAGCCGCGCAAGAAGTCGCGCATCTGGCTCGGCACCTTCCCGACGGCGGAGATGGCCGCGCGCGCGCACGACGTGGCCGCGCTCGCCATCAAGGGCCGCGCCGCGCACCTCAACTTCCCGAGCCTCGCCCACACGCTCCCGCGCCCGGCCTCCACCTCACCCTCCGACATCCAGGCCGCCGCCGCCCTCGCCGCAGCTGCAGCCGCCACCGACCAATGCGAGTCCTCCTCCTCTGCCGTCGCCGCCGCCACCGCCACCGACGCCGAGGCGGCGGAGTCCACCTCGTCGGCCGCGGCCAGCCCGTGCGCCGCCACCAGCAGCGTCGAGGAGAACGCGCTGTTCGACCTGCCCGACCTTCTCCTCGACCTGAGCGACGGGCTCTGGTGCTCACCCGTCTGGACGACAGCGCCGGCCGATCAGTACGACGCCGGCGACGACGGCGACGACGCCGCGGCGCCGCTCCTGTGGGCCGAGCAGTGCTGGATGGACGCCCCAGCGGCGCCCGTGCAGCCTGACTAATTAAGCCAATCCACCTGCTCCGACTCGCCGGCCGGCCATTGCACCGGTTGGGTTGGTCGCAGCAGTCAACCTATCGACACCATGGGCGTCTTTTTCTTTTCTCTCTGTTTTTTTTTCTTTTTTGGACAGAGTAATAAGGAAAAAAATAT]
[+] EMBL AY345232 [CTCGTGCGTCACCAATGGCACGCGAGAGAAGCGCGAGATCTCTAAGCACAAGCAGCTCAAGCGGAAGAGGAGCACCTCTCCTGCTCCTCCTCCCGGCTGCGGCGGCGGCCAAGGACAGGAAGCGGCGGTGGAGACTGACGCTGACGCTGGCGCCGCCGGCGAGGAGGAGAGCAGCAGCTGCGGTGGCGCTGGCGCCGGCGAGGGCGAGCGCAAGAGGGGTGACGCCGGCAGGCACCCGTCGTACCGCGGCGTGAGGCGGCGGAGCTGGGGCAAGTGGGTGTCGGAGATCCGCGAGCCGCGCAAGAAGTCGCGCATCTGGCTCGGCACCTTCCCGACGGCGGAGATGGCCGCGCGCGCGCACGACGTGGCCGCGCTCGCCATCAAGGGCCGCGCCGCGCACCTCAACTTCCCGAGCCTCGCCCACACGCTCCCGCGCCCGGCCTCCACCTCACCCTCCGACATCCAGGCCGCCGCCGCCCTCGCCGCAGCTGCAGCCGCCACCGACCAATGCGAGTCCTCCTCCTCTGCCGTCGCCGCCGCCACCGCCACCGACGCCGAGGCGGCGGAGTCCACCTCGTCGGCCGCGGCCAGCCCGTGCGCCGCCACCAGCAGCGTCGAGGAGAACGCGCTGTTCGACCTGCCCGACCTTCTCCTCGACCTGAGCGACGGGCTCTGGTGCTCACCCGTCTGGACGACAGCGCCGGCCGATCAGTACGACGCCGGCGACGACGGCGACGACGCCGCGGCGCCGCTCCTGTGGGCCGAGCAGTGCTGGATGGACGCCCCAGCGGCGCCCGTGCAGCCTGACTAATTAAGCCAATCCACCTGCTCCGACTCGCCGGCCGGCCATTGCACCGGTTGGGTTGGTCGCAGCAGTCAACCTATCGACACCATGGGCGTCTTTTTCTTTTCTCTCTGTTTTTTTTTCTTTTTTGGACAGAGTAATAAGGAAAAAAATAT]
consensusID : consensus_10306#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 896 fasta sequence
[CTCGCTAGCTACCTACCCACCTCCGCGTCGTCGTCGTCGTCGTCGAGCGCT--A-CGATCGCCATGGCAGCCAGCGAGCAGAGCTCCGAGTCGTCGTCGACGGCGTCCACGTCGTCGTGCGGCAAGAAACAGCAGGTGGCCGGGAAGAGGAAGCGCGAGGACGTCGGCGGCGGCGGGGAGCAGGCGGCGGCGGTGGCGTACAGGGGGGTGAGGATGAGGGCGTGGGGGAAGTGGGTGTCGGAGATCAGGGAGCCGAGGAAGAAGTCCCGCATCTGGCTCGGCACCTTCCCGTGCCCGGAGATGGCGGCGCGTGCGCACGACGTCGCCGCGCTCAGCATCAAGGGCGCCCGCGCCGTCCTCAACTTCCCCGACCTCGCCCCTGCCCTCCCGCGCCCGGCCTCCCTCGCCCCCCGCGACGTCCAGGCCGCCGCCGCCCTCGCCGCCGTCATGCACCACCACAAACACCCCTCCTCCTCCACCTCCACCTCCTCGCCGCCGGCTGCTCCTCCGCCGGACGAACACCACCCTCGCCACGAGCCGCAGCAGCCTGAGTCGAGCAGGGAGGATGACCAGCAGCAGCAGCCGGCGGCGGCGGCGGCGGCGCAGATGGCGGTGGCCGAGCTGGTGTTCGACGAGCTGGCGCCGCTGTGGGTGGAGGACGTGGTGGAGTTCGGGACGTCGGATCATTGCTGGACGGCGTACGATGCGCTTGACCCCATCGGCTTCCAGCCTCTCCTCTGGGAGTACTAGGCTGCTGCTTGTAAAACAGCTTCCTCTTGTTTTCTTTT-TCTT-TTTTTTTGGTTTTGTTTTTTGTGTGGATTTTTTCCCCTAGTGCTGCTTAAAATGTGGCTTGTTTTTTTTCTTCTCTCTTTCAATCTTGATTTGAGTTGGATTTGGAG]
[+] EMBL AY339374 [CTCGCTAGCTACCTACCCACCTCCGCGTCGTCGTCGTCGTCGTCGAGCGCT A CGATCGCCATGGCAGCCAGCGAGCAGAGCTCCGAGTCGTCGTCGACGGCGTCCACGTCGTCGTGCGGCAAGAAACAGCAGGTGGCCGGGAAGAGGAAGCGCGAGGACGTCGGCGGCGGCGGGGAGCAGGCGGCGGCGGTGGCGTACAGGGGGGTGAGGATGAGGGCGTGGGGGAAGTGGGTGTCGGAGATCAGGGAGCCGAGGAAGAAGTCCCGCATCTGGCTCGGCACCTTCCCGTGCCCGGAGATGGCGGCGCGTGCGCACGACGTCGCCGCGCTCAGCATCAAGGGCGCCCGCGCCGTCCTCAACTTCCCCGACCTCGCCCCTGCCCTCCCGCGCCCGGCCTCCCTCGCCCCCCGCGACGTCCAGGCCGCCGCCGCCCTCGCCGCCGTCATGCACCACCACAAACACCCCTCCTCCTCCACCTCCACCTCCTCGCCGCCGGCTGCTCCTCCGCCGGACGAACACCACCCTCGCCACGAGCCGCAGCAGCCTGAGTCGAGCAGGGAGGATGACCAGCAGCAGCAGCCGGCGGCGGCGGCGGCGGCGCAGATGGCGGTGGCCGAGCTGGTGTTCGACGAGCTGGCGCCGCTGTGGGTGGAGGACGTGGTGGAGTTCGGGACGTCGGATCATTGCTGGACGGCGTACGATGCGCTTGACCCCATCGGCTTCCAGCCTCTCCTCTGGGAGTACTAGGCTGCTGCTTGTAAAACAGCTTCCTCTTGTTTTCTTTT TCTT TTTTTTTGGTTTTGTTTTTTG ]
[+] EMBL AK108873 [ GCGTCGTCGTCGTCGTCGCCGAGCGCTCGATCGATCGCCATGGCAGCCAGCGAGCAGAGCTCCGAGTCGTCGTCGACGGCGTCCACGTCGTCGTGCGGCAAGAAACAGCAGGTGGCCGGGAAGAGGAAGCGCGAGGACGTCGGCGGCGGCGGGGAGCAGGCGGCGGCGGTGGCGTACAGGGGGGTGAGGATGAGGGCGTGGGGGAAGTGGGTGTCGGAGATCAGGGAGCCGAGGAAGAAGTCCCGCATCTGGCTCGGCACCTTCCCGTGCCCGGAGATGGCGGCGCGTGCGCACGACGTCGCCGCGCTCAGCATCAAGGGCGCCCGCGCCGTCCTCAACTTCCCCGACCTCGCCCCTGCCCTCCCGCGCCCGGCCTCCCTCGCCCCCCGCGACGTCCAGGCCGCCGCCGCCCTCGCCGCCGTCATGCACCACCACAAACACCCCTCCTCCTCCACCTCCACCTCCTCGCCGCCGGCTGCTCCTCCGCCGGACGAACACCACCCTCGCCACGAGCCGCAGCAGCCTGAGTCGAGCAGGGAGGATGACCAGCAGCAGCAGCCGGCGGCGGCGGCGGCGGCGCAGATGGCGGTGGCCGAGCTGGTGTTCGACGAGCTGGCGCCGCTGTGGGTGGAGGACGTGGTGGAGTTCGGGACGTCGGATCATTGCTGGACGGCGTACGATGCGCTTGACCCCATCGGCTTCCAGCCTCTCCTCTGGGAGTACTAGGCTGCTGCTTGTAAAACAGCTTCCTCTTCTTTTCTTTTCTTTTCTTTTTTTGGTTTTGTTTTTTGTGTGGATTTTTTCCCCTAGTGCTGCTTAAAATGTGGCTTGTTTTTTTTCTTCTCTCTTTCAATCTTGATTTGAGTTGGATTTGGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10306#0 ACTTCCATCGATCTCTCTCCTCGCCACGGGCCACGGCCTTCTCCTAACGGGAGCCATGGA 60
consensus_10306#3 ------------------------------------------------------------
consensus_10306#1 ------------------------------------------------------------
consensus_10306#2 ------------------------------------------------------------
consensus_10306#4 ------------------------------------------------------------
consensus_10306#0 AGCAGACGCGAGCCATACACCCACCACCTCCTCCTCCGTCTCCGTCTCCTTCTCCTCCTC 120
consensus_10306#3 ------------------------------------------------------------
consensus_10306#1 ------------------------------------------------------------
consensus_10306#2 ------------------------------------------------------------
consensus_10306#4 ------------------------------------------------------------
consensus_10306#0 GTCGCTGTCCACTTCCTCCTCCACCTCCTCCCTCGTCG-ACAATGGCGCGCAAGACCGGC 179
consensus_10306#3 ---------------------------CTCGTGCGTCA-CCAATGGCACGCGAGAGAAGC 32
consensus_10306#1 -TCACCACACACCACGCCACTCGCCTCGCCTCGCCTCGCACAGTCGCTCGCTCGCCCGCT 59
consensus_10306#2 ------------------------------------------------------------
consensus_10306#4 ------------------------------------------------------------
consensus_10306#0 CCAAGAGCTCCAAGCCCAAACACGCCGCCAAGAAGCGCAAGAGAGCGGCCGCGGAGGAAC 239
consensus_10306#3 GCGAGATCTCTAAGCACAAGCA-GC--TCAAGCGGAAGAGGAGCACCTCTCCTGCTCCTC 89
consensus_10306#1 CTAGCTAGCTCACAGCTCGCTCACTCGCTCTCCTCTTCCAACCAACTCCACCACCACCAG 119
consensus_10306#2 --------------------------------------------ACTACTCCAGTCCACA 16
consensus_10306#4 ------------------------------CTCGCTAGCTACCTACCCACCTCCGCGTCG 30
*
consensus_10306#0 CTGCCAATGCCGCCCACGGCGCAGGGGAGGATACCAGCAGCTGCAGCACCGACGACAACG 299
consensus_10306#3 CTCCCGGCTGCGGCGGCGGCCAAGGACAGGA-AGCGGCGG-TGGAG-ACTGACGCTGACG 146
consensus_10306#1 TCCACCACAGCGCGCGGCGCCATGGACGACTCGTCGTTCGGTTCCGAGCCGACCACGTCC 179
consensus_10306#2 CCCGCACCACCGCG-GCAGCCATGGACGACTC-----CCACGACCTGGCCTCCC-CGACC 69
consensus_10306#4 TCGTCGTCGTCGTCGAGCGCTACGATCGCCAT---GGCAGCCAGCGAGCAGAGCTCCGAG 87
* ** ** * *
consensus_10306#0 CGGCGGCGAGCGGCAAGGCGCAGGCGGGCGGCGGCGGCGGCGGCGTCGACAGCAGC-AGC 358
consensus_10306#3 CTGGCGCCGCCGGCGAGG---AGGAGAGCAGCAGCTGCGGTGGCGCTGGCGCCGGCGAGG 203
consensus_10306#1 TCCTCGGGCGGGGAGGCGCCGGCCTCCCCGCCGTCCACCGCGTCGTCGTCCTCAGACGGC 239
consensus_10306#2 TCCCCTGACACGGCGTCCTCGTCGTCTTCGTCTACGTCGACATCATCGTCCTC---CGCC 126
consensus_10306#4 TCGTCGTCGACGGCGTCCACGTCGTC-GTGCGGCAAGAAACAGCAG-GTGGCCGGGAAGA 145
** * * *
consensus_10306#0 ACCTGCACCGCCGCCTCGGCGCCGAGGAGCGGCTTCAAGCACC--CGTCGTACCGCGGCG 416
consensus_10306#3 GCGAGCGCAAGAGGGGTGACGCCGG----------CAGGCACC--CGTCGTACCGCGGCG 251
consensus_10306#1 GCCGGCGGCAAGAAGAAGCGGCCGCGCAAGGACGGGCACCACC--CGACGTACCGCGGGG 297
consensus_10306#2 ACCGTCGCCCCGAAGAAGCGGCCGCGCAACGACGGCCGGCACC--CGACGTACCGCGGCG 184
consensus_10306#4 GGAAGCGCGAGGACGTCGGCGGCGGCGGGGAGCAGGCGGCGGCGGTGGCGTACAGGGGGG 205
* * * ** * * * ***** * ** *
consensus_10306#0 TGCGCCGCCGGAGCTGGGGGAAGTGGGTGTCGGAGATCCGGGAGCCCCGCAAGAAGTCGC 476
consensus_10306#3 TGAGGCGGCGGAGCTGGGGCAAGTGGGTGTCGGAGATCCGCGAGCCGCGCAAGAAGTCGC 311
consensus_10306#1 TGCGCATGCGGAGCTGGGGCAAGTGGGTGTCGGAGATCAGGGAGCCGCGGAAGAAGTCGC 357
consensus_10306#2 TGCGCATGCGGAGCTGGGGGAAGTGGGTGTCCGAGATCAGGGAGCCCCGCAAGAAGTCGC 244
consensus_10306#4 TGAGGATGAGGGCGTGGGGGAAGTGGGTGTCGGAGATCAGGGAGCCGAGGAAGAAGTCCC 265
** * ** ***** *********** ****** * ***** * ******** *
consensus_10306#0 GCATCTGGCTGGGTACCTTCCCCACCGCGGAGATGGCGGCGCGCGCCCACGACGTGGCCG 536
consensus_10306#3 GCATCTGGCTCGGCACCTTCCCGACGGCGGAGATGGCCGCGCGCGCGCACGACGTGGCCG 371
consensus_10306#1 GCATCTGGCTGGGCACCTTCGCCACCGCCGAGATGGCCGCGCGCGCGCACGACGTCGCCG 417
consensus_10306#2 GCATCTGGCTGGGCACGTTCGCCACCGCGGAGATGGCCGCGCGCGCGCACGACGTGGCCG 304
consensus_10306#4 GCATCTGGCTCGGCACCTTCCCGTGCCCGGAGATGGCGGCGCGTGCGCACGACGTCGCCG 325
********** ** ** *** * * ******** ***** ** ******** ****
consensus_10306#0 CGCTCGCCATCAAGGGCCGGAACGCGCACCTCAACTTCCCGGACAGCGCCCACGAGCTGC 596
consensus_10306#3 CGCTCGCCATCAAGGGCCGCGCCGCGCACCTCAACTTCCCGAGCCTCGCCCACACGCTCC 431
consensus_10306#1 CGCTCGCCATCAAGGGCCGCGCCGCGCACCTCAACTTCCCGGACCTCGCCCACGAGCTGC 477
consensus_10306#2 CGCTCGCCATCAAGGGCCGCACCGCGCACCTCAACTTCCCGGACCTCGCGCACCTGCTCC 364
consensus_10306#4 CGCTCAGCATCAAGGGCGCCCGCGCCGTCCTCAACTTCCCCGACCTCGCCCCTGCCCTCC 385
***** ********** *** ************ * *** * ** *
consensus_10306#0 CCCGCCCGGAGTCCACCTCCCCGGCAGACATCCAGGCCGCCGCCGCCAAGGCTGCCGCCG 656
consensus_10306#3 CGCGCCCGGCCTCCACCTCACCCTCCGACATCCAGGCCGCCGCCGCCCTCGCCGCAGCTG 491
consensus_10306#1 CGCGCCCGGCCACCGCGGCGCCCAAGGACGTCCAGGCCGCAGCCGCGCTCGCCGCCGCCG 537
consensus_10306#2 CGCGCCCGGCCACCGCGGCGCCCAAGGACGTGCAGGCGGCGGCGCTGCTCGCCGCCGCCG 424
consensus_10306#4 CGCGCCCGGCCTCCCTCGCCCCCCGCGACGTCCAGGCCGCCGCCGCCCTCGCCGCCGTCA 445
* ******* ** * ** *** * ***** ** ** ** ** *
consensus_10306#0 -AGGTGCGGT--GCGAGGAGGAGTCGTCGCC----GTCGTCGTCGCC--CACCGCCGAGC 707
consensus_10306#3 CAGCCGCCACCGACCAATGCGAGTCCTCCTCCTCTGCCGTCGCCGCCGCCACCGCCACCG 551
consensus_10306#1 C---CGACTTC--CCGGCCTCCTCCGCCAAT----GCGGGCGCCAGCAATAACCCCGACG 588
consensus_10306#2 CAGCCGACTTC--CCCTCCGTCTCCGTCGAC----GCCAATGCCA---AGAGCCCCGACA 475
consensus_10306#4 TG--CACCACC-ACAAACACCCCTCCTCCTCC---ACCTCCACCTCC-TCGCCGCCGGCT 498
* * * * * **
consensus_10306#0 AACCCGAGGAGGAAG---CCG---CCTGCCCTGACACGGT------GCACGCCG------ 749
consensus_10306#3 ACGCCGAGGCGGCGGAGTCCA---CCTCGTCGGCCGCGGCCAGCCCGTGCGCCGCCACCA 608
consensus_10306#1 GATCGGACGACGCGAGCGCCGGGTCCGCCTCGCCGCCCCCGCCGCCGGACGCCG------ 642
consensus_10306#2 CCTGCTCCGTCGCCAGCGCCG---CCTCGCCGCAGCCGCCACCGCCGGACGCCG------ 526
consensus_10306#4 GCTCCTCCGCCGGACGAACACCACCCTCGCCACGAGCCGCAGCAGCCTGAGTCG------ 552
* * * ** * * * **
consensus_10306#0 ACGGCGGCCAGGACAATGCTCTCTTCGACCTACCCGACCTTCTTCTCGACCTACGGGACG 809
consensus_10306#3 GCAGCGTCGAGGAGAACGCGCTGTTCGACCTGCCCGACCTTCTCCTCGACCTGAGCGACG 668
consensus_10306#1 ---------CTGACGACGCGCTGTTCGACCTCCCCGACCTCCTCCTCGACCTCAGATACG 693
consensus_10306#2 AAGCGGACCCTGACAGCACGCTGTTCGACCTCCCGGACCTGCTCCTGGACCTGAGATACG 586
consensus_10306#4 ----------AGCAGGGAGGATGACCAGCAGCAGCAGCCGGCGGCGGCGGCGGCGGCGCA 602
* * * * ** * * * * *
consensus_10306#0 GGCTCTGGTGGTCG---CCGGTGTGGCCGGCGGCACTGGCGGCCGAGGAGTACGACGGCG 866
consensus_10306#3 GGCTCTGGTGCTCA---CCCGTCTGGACGACAGCGCCGGCCGATCAGTACGACGCCGGCG 725
consensus_10306#1 GCCCGCCCAGCTCGGGCCTCTCGTGCGCGTCGTCTTGGGAAGACGAAGTGGGCTTAATCT 753
consensus_10306#2 AGACGTCC---TCGAGCCTCTCGTGCGGGGCGTCGTGGGCCGTCGATGACGACGTGGCCG 643
consensus_10306#4 GATGGCGGTGGCCGAG---CTGGTGTTCGACGA-GCTGGC-GCCGCTGTGGGTGGAGGAC 657
* ** * * ** *
consensus_10306#0 GCGACGCCG---TCGTGCTCAATGAGCCACTCTTGTG-GGCCGAGTAGCCAT---TTTAC 919
consensus_10306#3 ACGACGGCG---ACGACGCCGCGGCGCCGCTCCTGTG-GGCCGAGCAGTGCTGGATGGAC 781
consensus_10306#1 CCGGCGCCG-GTGCCGCCGCCGCCGGCGTGTTCCGCCTGGAGGAGCCACTTCTG-TGGGA 811
consensus_10306#2 GCGGCGTCGTGTTCCGCCTCGAGGAGCCCATGCTGTG-GGATTACTGATCAATG-TGGCT 701
consensus_10306#4 GTGGTGGAG---TTCGGGACGTCGGATCATTGCTGGACGGCGTACGATGCGC---TTGAC 711
* * * * * * ** * *
consensus_10306#0 CTTTCTG-GGCTCATGAATAGGCT-----ACAACGACAACTCTCAAGAAAGAAAGAAAAA 973
consensus_10306#3 GCCCCAGCGGCGCCCGTGCAGCCTGACTAATTAAGCCAATCCACCTGCTCCGACTCGCCG 841
consensus_10306#1 GTAC-TAAAAGCCAAA-GCGCCGCCG-GTAAAACACTCGTCAGTG-CTAAAATCGAGCAG 867
consensus_10306#2 GCTCATGGGAGCCAGTCATGCTTCCGTGTATTAGATCGATCAGTGGCTTGTACATGGCGG 761
consensus_10306#4 CCCATCGGCTTCCAGCCTCTCCTCTG---GGAGTACTAGGCTGCTGCTTGTAA--AACAG 766
*
consensus_10306#0 AAAGGGAAAAATGTTATTACCGCTATATTTAGTA--GTTACTGCTATTGACAAAGTTTAG 1031
consensus_10306#3 GCCGGCCATTGCACCGGTTGGGTTGGTCGCAGCA--GTCAAC-CTATCGACACCATGGGC 898
consensus_10306#1 C---------CTGCATGTACAACCCG------------TAATTTTCCACGCATGACCAAA 906
consensus_10306#2 TGCTTCTTTTCTTCTTCTTTACTCTGCTTCTGCTCTGTTCTCTTTCTTCTTTTCTCCCTT 821
consensus_10306#4 CTTCCTCTTGTTTTCTTTTTCTTTTTTTTTGGTTTTGTTTTTTGTGTGGATTTTTTCCCC 826
* *
consensus_10306#0 TCTATGTTGTGCTTGATTAGGCCATGAAGCCTGTGTGCTTTGTGTACCAACAATCAAAAA 1091
consensus_10306#3 GTCTTTTTCTTTTCTCTCTGTTTTTTTTTCTTTTTTGGACAGAGTA---ATAAGGAAAAA 955
consensus_10306#1 AGAATTCA---TGCATGCAAGCCAGCTACGGCCTACGGCGCACAGAAACTTGAGCCAAAA 963
consensus_10306#2 TGTATTTTGTTTTTTTTCCTTCCATTTTTTCTTCTTTTCTTTGCCAAATCTAGCATGCGA 881
consensus_10306#4 TA-GTGCTGCTTAAAATGTGGCTTGTTTTTTTTCTTCTCTCTTTCAATCTTGATTTGAGT 885
* *
consensus_10306#0 GATCTCTCTACTAATAGAAGTTAATT---------------------------------- 1117
consensus_10306#3 AATAT------------------------------------------------------- 960
consensus_10306#1 AATC----AGCGTCGTTTTGTCCTGCGTTTGCGTCGCCAAATTTGGGAAGCA-GACCATG 1018
consensus_10306#2 GGTTGTATAAAGTCAGTTCCTTTTCC--TCGCCTTGCTTGATTTGGGGGACAAGAATATG 939
consensus_10306#4 TGGATTTGGAG------------------------------------------------- 896
consensus_10306#0 ------------------------------
consensus_10306#3 ------------------------------
consensus_10306#1 TATAAAAAATCATC---------------- 1032
consensus_10306#2 TATAATTAACAAGCATCTTATCTTCGACTA 969
consensus_10306#4 ------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||