cluster # 1032

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Oryza sativa
cluster # 1032 cluster # 1032 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1032#0 length = 522 sequences # 1

consensus_1032#1 length = 482 sequences # 1

consensusID : consensus_1032#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence

                              [TTGCCAGAGCATGGTTCACCGTTGGAGACCTGATGCTGTTATGAGTACGACCGGGCTTGGACGGTACTCGGTCCTCCGGATTTTCAAGGCCCCCGGGGGCGCACCGGACACCAGCGCAGACAGTGCTGGTGCTCTTCCAGGCCAGCTGGACCCTACCTCCGGCTGAACCGTTTCACAGGTGTTGCGCAGGGCACGTTAAGCAAGAAAAGATAACTCTTCCCGAGGCACCCCGCCGGCGTCTCCAGGACTTCACTAACGTCAGCACAGTCAACACAGCACACAGTCACCAGGCTCAGGGAAATCTTAACCCAGATTCCCATTTCAGGGGCACAGCGCAGTGTCGCAGCTCTCTGCACGGGGTTACCCCGTCCACTTAGGATCAGGCATTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGCACTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGCCAGCTCCGCCCGGCTCGCGCCCCGGTTTTCCGCG]

[+] EMBL BI796946             [TTGCCAGAGCATGGTTCACCGTTGGAGACCTGATGCTGTTATGAGTACGACCGGGCTTGGACGGTACTCGGTCCTCCGGATTTTCAAGGCCCCCGGGGGCGCACCGGACACCAGCGCAGACAGTGCTGGTGCTCTTCCAGGCCAGCTGGACCCTACCTCCGGCTGAACCGTTTCACAGGTGTTGCGCAGGGCACGTTAAGCAAGAAAAGATAACTCTTCCCGAGGCACCCCGCCGGCGTCTCCAGGACTTCACTAACGTCAGCACAGTCAACACAGCACACAGTCACCAGGCTCAGGGAAATCTTAACCCAGATTCCCATTTCAGGGGCACAGCGCAGTGTCGCAGCTCTCTGCACGGGGTTACCCCGTCCACTTAGGATCAGGCATTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGCACTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGCCAGCTCCGCCCGGCTCGCGCCCCGGTTTTCCGCG]




>consensus_1032#0
TTGCCAGAGCATGGTTCACCGTTGGAGACCTGATGCTGTTATGAGTACGACCGGGCTTGG
ACGGTACTCGGTCCTCCGGATTTTCAAGGCCCCCGGGGGCGCACCGGACACCAGCGCAGA
CAGTGCTGGTGCTCTTCCAGGCCAGCTGGACCCTACCTCCGGCTGAACCGTTTCACAGGT
GTTGCGCAGGGCACGTTAAGCAAGAAAAGATAACTCTTCCCGAGGCACCCCGCCGGCGTC
TCCAGGACTTCACTAACGTCAGCACAGTCAACACAGCACACAGTCACCAGGCTCAGGGAA
ATCTTAACCCAGATTCCCATTTCAGGGGCACAGCGCAGTGTCGCAGCTCTCTGCACGGGG
TTACCCCGTCCACTTAGGATCAGGCATTACCCATGTGCAAGTGCCGTTCACATGGAACCT
TTCTCCTCTTCGCACTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGC
ACCGACGCCAGCTCCGCCCGGCTCGCGCCCCGGTTTTCCGCG

consensusID : consensus_1032#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence

                              [CTGGTACTCNGGTCACTCCAGGATTTTCAAGGCACAGCCAGGGGGCAGCACCAGGACAACCAGCAGCAGACGTGCAGGTGCTCTTCCAGGTCCAGCTGGACACACTACACTCACAGTCTGAACCAAGTTTCCAGGGTTAGTCAGGTGCACAGTTAAGCAAGAAAAGATAACTCTTCCCAGAGGCCCACACAGCACGGCGTCTCACAGGACATTCACTAACGTCCCAGTCAACCAGCCACAGTCCCAGGCTCAGGGAAATCTTAACCCGATTCCCTTTCAGGGGCACAGCAGCAGTGTCAGCAGCTCTCTGCCAGGGGTTACCCCAGTCCACTTAGGATCAGGCTTACACCATGTGCAAGTGCACGTTCACATGGAACCTTTCTCCTCTTCGCACTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGCCGCTCCGCCCAGGGCTCGCGCCACTGGGTTTTGCG]

[+] EMBL BI807324             [CTGGTACTCNGGTCACTCCAGGATTTTCAAGGCACAGCCAGGGGGCAGCACCAGGACAACCAGCAGCAGACGTGCAGGTGCTCTTCCAGGTCCAGCTGGACACACTACACTCACAGTCTGAACCAAGTTTCCAGGGTTAGTCAGGTGCACAGTTAAGCAAGAAAAGATAACTCTTCCCAGAGGCCCACACAGCACGGCGTCTCACAGGACATTCACTAACGTCCCAGTCAACCAGCCACAGTCCCAGGCTCAGGGAAATCTTAACCCGATTCCCTTTCAGGGGCACAGCAGCAGTGTCAGCAGCTCTCTGCCAGGGGTTACCCCAGTCCACTTAGGATCAGGCTTACACCATGTGCAAGTGCACGTTCACATGGAACCTTTCTCCTCTTCGCACTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGCCGCTCCGCCCAGGGCTCGCGCCACTGGGTTTTGCG]




>consensus_1032#1
CTGGTACTCNGGTCACTCCAGGATTTTCAAGGCACAGCCAGGGGGCAGCACCAGGACAAC
CAGCAGCAGACGTGCAGGTGCTCTTCCAGGTCCAGCTGGACACACTACACTCACAGTCTG
AACCAAGTTTCCAGGGTTAGTCAGGTGCACAGTTAAGCAAGAAAAGATAACTCTTCCCAG
AGGCCCACACAGCACGGCGTCTCACAGGACATTCACTAACGTCCCAGTCAACCAGCCACA
GTCCCAGGCTCAGGGAAATCTTAACCCGATTCCCTTTCAGGGGCACAGCAGCAGTGTCAG
CAGCTCTCTGCCAGGGGTTACCCCAGTCCACTTAGGATCAGGCTTACACCATGTGCAAGT
GCACGTTCACATGGAACCTTTCTCCTCTTCGCACTTCAAAGTTCTCATTTGAATATTTGC
TACTACCACCAAGATCTGCACCGACGCCGCTCCGCCCAGGGCTCGCGCCACTGGGTTTTG
CG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1032#0      TTGCCAGAGCATGGTTCACCGTTGGAGACCTGATGCTGTTATGAGTACGACCGGGCTTGG 60
consensus_1032#1      ------------------------------------------------------------
                                                                                  

consensus_1032#0      ACGGTACTCGGTCCTCC---GGATTTTCAAGGCCC---CCGGGGGC-GCACC-GGACA-C 111
consensus_1032#1      CTGGTACTCNGGTCACTCCAGGATTTTCAAGGCACAGCCAGGGGGCAGCACCAGGACAAC 60
                        ******* *  * *    ************* *   * ****** ***** ***** *

consensus_1032#0      CAGC-GCAGACAGTGCTGGTGCTCTTCCAGG-CCAGCTGGACCC----TACCTCCGG-CT 164
consensus_1032#1      CAGCAGCAGAC-GTGCAGGTGCTCTTCCAGGTCCAGCTGGACACACTACACTCACAGTCT 119
                      **** ****** **** ************** ********** *     **   * * **

consensus_1032#0      GAACCGTTTCACAGGTGTTGCGCAGG-GCAC-GTTAAGCAAGAAAAGATAACTCTTCCCG 222
consensus_1032#1      GAACCAAGTTTCCAGGGTTAGTCAGGTGCACAGTTAAGCAAGAAAAGATAACTCTTCCCA 179
                      *****   *  *  * ***   **** **** *************************** 

consensus_1032#0      AGGCACCCCGC----CGGCGTCTC-CAGGAC-TTCACTAACGTCAGCACAGTCAACACAG 276
consensus_1032#1      GAGGCCCACACAGCACGGCGTCTCACAGGACATTCACTAACGTCC---CAGTCAAC-CAG 235
                        *  ** * *    ********* ****** ************    ******** ***

consensus_1032#0      CACACAGTCACCAGGCTCAGGGAAATCTTAACCCAGATTCCCATTTCAGGGGCACAGC-G 335
consensus_1032#1      C-CACAGTC-CCAGGCTCAGGGAAATCTTAACCC-GATTCCC-TTTCAGGGGCACAGCAG 291
                      * ******* ************************ ******* *************** *

consensus_1032#0      CAGTGTC-GCAGCTCTCTGCACGGGGTTACCCC-GTCCACTTAGGATCAGGCATTACCCA 393
consensus_1032#1      CAGTGTCAGCAGCTCTCTGCCAGGGGTTACCCCAGTCCACTTAGGATCAGGCTTACACCA 351
                      ******* ************  *********** ****************** *   ***

consensus_1032#0      TGTGCAAGTGC-CGTTCACATGGAACCTTTCTCCTCTTCGCACTTCAAAGTTCTCATTTG 452
consensus_1032#1      TGTGCAAGTGCACGTTCACATGGAACCTTTCTCCTCTTCGCACTTCAAAGTTCTCATTTG 411
                      *********** ************************************************

consensus_1032#0      AATATTTGCTACTACCACCAAGATCTGCACCGACGCCAGCTCCGCCC--GGCTCGCGCCC 510
consensus_1032#1      AATATTTGCTACTACCACCAAGATCTGCACCGACGCC-GCTCCGCCCAGGGCTCGCGCCA 470
                      ************************************* *********  ********** 

consensus_1032#0      CGGTTTTCCGCG 522
consensus_1032#1      CTGGGTTTTGCG 482
                      * *  **  ***