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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10325#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 3183 fasta sequence
[CAGGCTAGAAACTCGGTCGATGCTAGCACGCAAGGACCTGACTCGTCTTCAGCAAAATTGTCATCAGAGCCTGATGGTTCTTCTGCAGATAGGCCCCGGCATTTCGTTGAGCTTGCTAGAGCTATGAAGATTAGTCAAGACACTCATGAGTCTCTGGCCACAGATGCTGCTAATTATCTTTGTTCTCAGATTCAGAACCTTCTTGCACCTATTTATCCTGCTGTGAACCAAGGGGGTCCTTGGGAAGAGAGGTATGCAATGATTAGGTTAGCTCAGAAGCTGCAGAAATCCAAGAGAAATAAGCGATGGAGAAAGAGAAAAAGAAAGCATGTTGCAGAGCTTTTCCAGAAGGAGCATGCAGATTATGACAGAATTGATCAGGAAGCTGATGAATGGAGGGCTAGGCAAATAGCCAAGGACATGGCGCAGCGCAAGGTGGAAAACATGAAGCAGATTGCCAAGAAAAAAGCAAATGAGGAAAGAAAGCGTCTAGAATCTGAGGTAAAGTTAATGCTTACATTGTGGTGTGGAAATCCTGCTTGTCTGTGGACATCTGCGTGGAAATTGTGAGCGCTATGTTTCATTAATTCATTTTCATACACTGCTGAATTACTATACATTGTGATACCTTGAGTTATGAATTTTGTTAAGTTGTAGTAAGCATTAAGTTACACCATTTTTTATCTTTGACCTTATCTGATTTTCTACGAATTTAGGAAACTCTATAAGCTTGCTTCTAAAATTTCTTAAAGTCTTGTATATTTGTGTTTGATATGCTGCAACCCAACATCTTCAATTACACCACCTACCTACCTGTTTTCTTTCATTCAGAATTATTGTGCAATCAGTTTGTGAATTCTTGAGTGGTTATTTCAGTATGTTATATTTAGATTCCAAACTATTAATATTCTCTGTAGAAATTGTAAATTCAAGAGCGGCAAATACAATAGTCTTGTTTTCTAGAAAACTAATTTTCTCAATACAAATCTTCTATTTTCAGCTTGAGCTTGCCCTAATGGTCGAGAAACTACAGGAGCTTCGCTCTATGAGAGTTCAAAAAATGAAGAAACAAGGTCATTTTCTGCCAGAAGAAGATGATAAATATCTTGAGCGTGTTAAGGCTGCAGTTGAGGAAGAGGAGCGCCAAGCTGCAAGTGCTGCTCGGACTGATGCTGCCAAGGATGCTATTCTGACCGCGGAAGAGTCGAGGAAGGCTGTGCAGTGTTCAAATTCAAGAGAAGATGATTCTGATCAAGCCAAAAGTGCACCAACACTGGAACAAAACCAGAGAGATCCAGGAATAAGCGGCAGAAATCATCATGCAAGCCAAAAAACAGAGCATGAACTTCATAAAGATGACAGCAAAGGGCATGGGCATTATGATTCTGTTTCCAGTCTGCCTTTTGAGTTCTACCATTATTATCATGGAAGCAGCTACGACATGGGAACACTCATTGAGGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAGCCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTATTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGGCAAGTAGGTGTTTGAGTTGCTACTTTTTCCCCTTCATGTCAACTATTAATGCAGAAATTTGATTTAATATGTAGCCAATTGCATTGATGAAAATTAAATTGACTAAGCAAAGTTCAATTGCTTGCACTATGAACCCTCAGTTAAACACTTAATTATCTTATGGTTTCACATGAGTTATCCAATATAAGGCCCTGTGAGTTTCTTCACCAGCATAAACACTAAAAAAAATATTACGAAGAAATTGTGTTCCGGTCTATGCTTTTTCCAGGATGTCTTTTTGCACATCCATGATACGCTCCACTTATGGTCTGAAAATTTTAATCAATTTTGTTGACTGTGGGGCAAGATTGATACTGTCAGTGACCCAGTCCTGAACTTCTGATAAGTGATAACCACTTCTGCAGTCTTGAGTCACCATTGTAGTTCAAATGTGTTGCTTTGTAAGTTCTATGTAATCAAGTACTAAACATTGGAAACACCATTAAACTTCTTTGCCTTCTCTAAAGAGAACTTATTGTAGTTCATGCCAAGGACCAAATTGGATGTATACAATTCAGCCTTGCGAACTCGTTTTATATTCGGAATCAAGAAAAAATGAAGAAAAATGCTAGAATGGGCATCCCTTTTCTGATAATGGTATGCAGACATGGTGGAGGCTTTTCTATGTGATGATTACTGGCCACAGGTCCTTTTCTGATCTGTTGAGTAGTTCATGACAACTACCAGATCGTGACTCAAAATCAATGGGATTTTACATATTAGATCAACCAGTGTTGTTCCTATCCACTGCTCTAATTGTTACGAATGCATGGAGACATCATGTTATACTTATGTACCAATCTGTTCTTATGGTGTTGAACTGAACGTACAAAACTGTTGTAGGCTGTTGCTTAGACTGTAAGCTATATATTCAACAGGCTGGTGATATACCTTGAATAAATGTTAGGAATCGTTTGCCCCCTTCCTAATGATATTCCATAGTAACCTGCATCATGAATCACCACCTGAGAAATGAATAGCTTAGCATATGAGCTATAATGTTTCAGCATTTGATCAAACTCCCAGTTCAGCCCAAGATTATCTTGAAATCTAAAACACTGTTGTATGAAAATTACATATTCATAACATAACCTTAGTATTAATTATAGTTATAGTGTTTATTCAGTTAGTACCACAATACCAGTTAAATTTTACCCTATATATCTCTTTAATATGAGGTTTTCATTGAATATTTATCTACGATGCAATCGGTCCTGAGAGCACTTTAAAAAAATATATATGTTCTACTTTGTTTAAAGTTTCTGAGAAGCTTTGTGTTTGTTGGATCAGATACCCTGGTGAAGATTTAAACCGAGGAATGTTTTGGATTCAATTTTCTGAGTAAGATAGGACTAAGAAGTGGACCGGCAAATCTAGACTTGGAACTGTATCTAGCAATAGTCAACAGATACGAGCAAATAACTTCATAACATGATAGCTTAGATGAATAGCGGATTTGTTCTTTAGCTTATCATTTCAATACATTT]
[+] EMBL AK101123 [CAGGCTAGAAACTCGGTCGATGCTAGCACGCAAGGACCTGACTCGTCTTCAGCAAAATTGTCATCAGAGCCTGATGGTTCTTCTGCAGATAGGCCCCGGCATTTCGTTGAGCTTGCTAGAGCTATGAAGATTAGTCAAGACACTCATGAGTCTCTGGCCACAGATGCTGCTAATTATCTTTGTTCTCAGATTCAGAACCTTCTTGCACCTATTTATCCTGCTGTGAACCAAGGGGGTCCTTGGGAAGAGAGGTATGCAATGATTAGGTTAGCTCAGAAGCTGCAGAAATCCAAGAGAAATAAGCGATGGAGAAAGAGAAAAAGAAAGCATGTTGCAGAGCTTTTCCAGAAGGAGCATGCAGATTATGACAGAATTGATCAGGAAGCTGATGAATGGAGGGCTAGGCAAATAGCCAAGGACATGGCGCAGCGCAAGGTGGAAAACATGAAGCAGATTGCCAAGAAAAAAGCAAATGAGGAAAGAAAGCGTCTAGAATCTGAGGTAAAGTTAATGCTTACATTGTGGTGTGGAAATCCTGCTTGTCTGTGGACATCTGCGTGGAAATTGTGAGCGCTATGTTTCATTAATTCATTTTCATACACTGCTGAATTACTATACATTGTGATACCTTGAGTTATGAATTTTGTTAAGTTGTAGTAAGCATTAAGTTACACCATTTTTTATCTTTGACCTTATCTGATTTTCTACGAATTTAGGAAACTCTATAAGCTTGCTTCTAAAATTTCTTAAAGTCTTGTATATTTGTGTTTGATATGCTGCAACCCAACATCTTCAATTACACCACCTACCTACCTGTTTTCTTTCATTCAGAATTATTGTGCAATCAGTTTGTGAATTCTTGAGTGGTTATTTCAGTATGTTATATTTAGATTCCAAACTATTAATATTCTCTGTAGAAATTGTAAATTCAAGAGCGGCAAATACAATAGTCTTGTTTTCTAGAAAACTAATTTTCTCAATACAAATCTTCTATTTTCAGCTTGAGCTTGCCCTAATGGTCGAGAAACTACAGGAGCTTCGCTCTATGAGAGTTCAAAAAATGAAGAAACAAGGTCATTTTCTGCCAGAAGAAGATGATAAATATCTTGAGCGTGTTAAGGCTGCAGTTGAGGAAGAGGAGCGCCAAGCTGCAAGTGCTGCTCGGACTGATGCTGCCAAGGATGCTATTCTGACCGCGGAAGAGTCGAGGAAGGCTGTGCAGTGTTCAAATTCAAGAGAAGATGATTCTGATCAAGCCAAAAGTGCACCAACACTGGAACAAAACCAGAGAGATCCAGGAATAAGCGGCAGAAATCATCATGCAAGCCAAAAAACAGAGCATGAACTTCATAAAGATGACAGCAAAGGGCATGGGCATTATGATTCTGTTTCCAGTCTGCCTTTTGAGTTCTACCATTATTATCATGGAAGCAGCTACGACATGGGAACACTCATTGAGGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAGCCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTATTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGGCAAGTAGGTGTTTGAGTTGCTACTTTTTCCCCTTCATGTCAACTATTAATGCAGAAATTTGATTTAATATGTAGCCAATTGCATTGATGAAAATTAAATTGACTAAGCAAAGTTCAATTGCTTGCACTATGAACCCTCAGTTAAACACTTAATTATCTTATGGTTTCACATGAGTTATCCAATATAAGGCCCTGTGAGTTTCTTCACCAGCATAAACACTAAAAAAAATATTACGAAGAAATTGTGTTCCGGTCTATGCTTTTTCCAGGATGTCTTTTTGCACATCCATGATACGCTCCACTTATGGTCTGAAAATTTTAATCAATTTTGTTGACTGTGGGGCAAGATTGATACTGTCAGTGACCCAGTCCTGAACTTCTGATAAGTGATAACCACTTCTGCAGTCTTGAGTCACCATTGTAGTTCAAATGTGTTGCTTTGTAAGTTCTATGTAATCAAGTACTAAACATTGGAAACACCATTAAACTTCTTTGCCTTCTCTAAAGAGAACTTATTGTAGTTCATGCCAAGGACCAAATTGGATGTATACAATTCAGCCTTGCGAACTCGTTTTATATTCGGAATCAAGAAAAAATGAAGAAAAATGCTAGAATGGGCATCCCTTTTCTGATAATGGTATGCAGACATGGTGGAGGCTTTTCTATGTGATGATTACTGGCCACAGGTCCTTTTCTGATCTGTTGAGTAGTTCATGACAACTACCAGATCGTGACTCAAAATCAATGGGATTTTACATATTAGATCAACCAGTGTTGTTCCTATCCACTGCTCTAATTGTTACGAATGCATGGAGACATCATGTTATACTTATGTACCAATCTGTTCTTATGGTGTTGAACTGAACGTACAAAACTGTTGTAGGCTGTTGCTTAGACTGTAAGCTATATATTCAACAGGCTGGTGATATACCTTGAATAAATGTTAGGAATCGTTTGCCCCCTTCCTAATGATATTCCATAGTAACCTGCATCATGAATCACCACCTGAGAAATGAATAGCTTAGCATATGAGCTATAATGTTTCAGCATTTGATCAAACTCCCAGTTCAGCCCAAGATTATCTTGAAATCTAAAACACTGTTGTATGAAAATTACATATTCATAACATAACCTTAGTATTAATTATAGTTATAGTGTTTATTCAGTTAGTACCACAATACCAGTTAAATTTTACCCTATATATCTCTTTAATATGAGGTTTTCATTGAATATTTATCTACGATGCAATCGGTCCTGAGAGCACTTTAAAAAAATATATATGTTCTACTTTGTTTAAAGTTTCTGAGAAGCTTTGTGTTTGTTGGATCAGATACCCTGGTGAAGATTTAAACCGAGGAATGTTTTGGATTCAATTTTCTGAGTAAGATAGGACTAAGAAGTGGACCGGCAAATCTAGACTTGGAACTGTATCTAGCAATAGTCAACAGATACGAGCAAATAACTTCATAACATGATAGCTTAGATGAATAGCGGATTTGTTCTTTAGCTTATCATTTCAATACATTT]
[+] EMBL AU166358 [ ATCCAGGAATAAGCGGCAGAAATCATCATGCAAGCCAAAAAACAGAGCATGAACTTCATAAAGATGACAGCAAAGGGCATGGGCATTATGATTCTGTTTCCAGTCTGCCTTTTGAGTTCTACCATTATTATCATGGAAGCAGCTACGACATGGGAACACTCATTGAGGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAGCCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTATTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGGCAAGTAGGTGTTTGAGTTGCTACTTTTTCCCCTTCATGTCAACTATTAATGCAGAAATTTGATTTAAaaa ]
consensusID : consensus_10325#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1859 fasta sequence
[CCTCCCCTCTCCCTCCGCTCCGGCGGAGCGCCGCGAAACGCCCGCCGCAACCGAGCCCACCGTCGAGGCGATCGGCGGCGGAGGCGAGGGCCGCCGCCTTCCGTCGCAGGGGTCACCTTCTTCGTCCTCCCCCGGTCTCCCCCTGGGAAGCTGCCCGCCATGTTCCGACCACCGGGTGCTTTCGGGGTCGCACCCCCGCCGCCGCCGCCGCAGCAGCAGCAGCATCAGCCATGGCAGTGGCAGCCGCCTTTCCAGCCGCCGGCCGCTACATCCTTTTGGCAGCGGGACAATGTGCGGGAGCATGTGGGGAGGCTGCAGGAAACCATCGAATTAGCCACTGCAGTGATAAATGAGCTCGAGGAAATTGCGCAGGCTAGAAACTCGGTCGATGCTAGCACGCAAGGACCTGACTCGTCTTCAGCAAAATTGTCATCAGAGCCTGATGGTTCTTCTGCAGATAGGCCCCGGCATTTCGTTGAGCTTGCTAGAGCTATGAAGATTAGTCAAGACACTCATGAGTCTCTGGCCACAGATGCTGCTAATTATCTTTGTTCTCAGATTCAGAACCTTCTTGCACCTATTTATCCTGCTGTGAACCAAGGGGGTCCTTGGGAAGAGAGGTATGCAATGATTAGGTTAGCTCAGAAGCTGCAGAAATCCAAGAGAAATAAGCGATGGAGAAAGAGAAAAAGAAAGCATGTTGCAGAGCTTTTCCAGAAGGAGCATGCAGATTATGACAGAATTGATCAGGAAGCTGATGAATGGAGGGCTAGGCAAATAGCCAAGGACATGGCGCAGCGCAAGGTGGAAAACATGAAGCAGATTGCCAAGAAAAAAGAAAATGAGGAAAGAAAGCGTCTAGAATCTGAGCTTGAGCTTGCCCTAATGGTCGAGAAACTACAGGAGCTTCGCTCTATGAGAGTTCAAAAAATGAAGAAACAAGGTCATTTTCTGCCAGAAGAAGATGATAAATATCTTGAGCGTGTTAAGGCTGCAGTTGAGGAAGAGGAGCGCCAAGCTGCAAGTGCTGCTCGGACTGATGCTGCCAAGGATGCTATTCTGACCGCGGAAGAGTCGAGGAAGGCTGTGCAGTGTTCAAATTCAAGAGAAGATGATTCTGATCAAGCCAAAAGTGCACCAACACTGGAACAAAACCAGAGAGATCCAGGAATAAGCGGCAGAAATCATCATGCAAGCCAA-AAAACAGAGCATGAACTTCA-TAAAGATGACAGCAAA-GGGCAT-GGGCATTAT-GATTCTG-TTTCCAGTCTG-CCTTTTGAGTTCTACCATTATTATCATGGAAGCAGCTACGACATGGGAACACTCATTGAGGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAGCCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTATTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGCTGCATTTTGGGACTATTGGTTAGGACTTCAGCTTTTCCCCTATGATGAGCCATATAGATGGCCCCGAGAAAAAGATGGCCAACGAAAAAATCGTGGACACCATTAGGAGAAAACAAGAGGTTAGTGAATTGGATGGCATTAGCACCCAGTACTATATATCTCTATAATAGAGTAATAAGGACACGGCATAATGCCTGCTGCCTTTCTTGTTGTGCTTGCTTGCTCCTCCCATTTTCTTATCTCTTTGAGGTGATTAGTGATTACACAGACCAACAACTGAATCCTAAAGCTCGTAATGACAAATTTGATGATACTTGCAATTAATAAAAAGA]
[+] EMBL AK066242 [CCTCCCCTCTCCCTCCGCTCCGGCGGAGCGCCGCGAAACGCCCGCCGCAACCGAGCCCACCGTCGAGGCGATCGGCGGCGGAGGCGAGGGCCGCCGCCTTCCGTCGCAGGGGTCACCTTCTTCGTCCTCCCCCGGTCTCCCCCTGGGAAGCTGCCCGCCATGTTCCGACCACCGGGTGCTTTCGGGGTCGCACCCCCGCCGCCGCCGCCGCAGCAGCAGCAGCATCAGCCATGGCAGTGGCAGCCGCCTTTCCAGCCGCCGGCCGCTACATCCTTTTGGCAGCGGGACAATGTGCGGGAGCATGTGGGGAGGCTGCAGGAAACCATCGAATTAGCCACTGCAGTGATAAATGAGCTCGAGGAAATTGCGCAGGCTAGAAACTCGGTCGATGCTAGCACGCAAGGACCTGACTCGTCTTCAGCAAAATTGTCATCAGAGCCTGATGGTTCTTCTGCAGATAGGCCCCGGCATTTCGTTGAGCTTGCTAGAGCTATGAAGATTAGTCAAGACACTCATGAGTCTCTGGCCACAGATGCTGCTAATTATCTTTGTTCTCAGATTCAGAACCTTCTTGCACCTATTTATCCTGCTGTGAACCAAGGGGGTCCTTGGGAAGAGAGGTATGCAATGATTAGGTTAGCTCAGAAGCTGCAGAAATCCAAGAGAAATAAGCGATGGAGAAAGAGAAAAAGAAAGCATGTTGCAGAGCTTTTCCAGAAGGAGCATGCAGATTATGACAGAATTGATCAGGAAGCTGATGAATGGAGGGCTAGGCAAATAGCCAAGGACATGGCGCAGCGCAAGGTGGAAAACATGAAGCAGATTGCCAAGAAAAAAGAAAATGAGGAAAGAAAGCGTCTAGAATCTGAGCTTGAGCTTGCCCTAATGGTCGAGAAACTACAGGAGCTTCGCTCTATGAGAGTTCAAAAAATGAAGAAACAAGGTCATTTTCTGCCAGAAGAAGATGATAAATATCTTGAGCGTGTTAAGGCTGCAGTTGAGGAAGAGGAGCGCCAAGCTGCAAGTGCTGCTCGGACTGATGCTGCCAAGGATGCTATTCTGACCGCGGAAGAGTCGAGGAAGGCTGTGCAGTGTTCAAATTCAAGAGAAGATGATTCTGATCAAGCCAAAAGTGCACCAACACTGGAACAAAACCAGAGAGATCCAGGAATAAGCGGCAGAAATCATCATGCAAGCCAA AAAACAGAGCATGAACTTCA TAAAGATGACAGCAAA GGGCAT GGGCGTTAT GATTCTG TTTCCAGTCTG CCTTTTGAGTTCTACCATTATTATCATGGAAGCAGCTACGACATGGGAACACTCATTGAGGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAGCCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTATTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGCTGCATTTTGGGACTATTGGTTAGGACTTCAGCTTTTCCCCTATGATGAGCCATATAGATGGCCCCGAGAAAAAGATGGCCAACGAAAAAATCGTGGACACCATTAGGAGAAAACAAGAGGTTAGTGAATTGGATGGCATTAGCACCCAGTACTATATATCTCTATAATAGAGTAATAAGGACACGGCATAATGCCTGCTGCCTTTCTTGTTGTGCTTGCTTGCTCCTCCCATTTTCTTATCTCTTTGAGGTGATTAGTGATTACACAGACCAACAACTGAATCCTAAAGCTCGTAATGACAAATTTGATGAT ]
[+] EMBL CB674414 [ CGATGCTAGCACGCAAGGACCTGACTCGTCTTCAGCAAAATTGTCATCAGAGCCTGATGGTTCTTCTGCAGATAGGCCCCGGCATTTCGTTGAGCTTGCTAGAGCTATGAAGATTAGTCAAGACACTCATGAGTCTCTGGCCACAGATGCTGCTAATTATCTTTGTTCTCAGATTCAGAACCTTCTTGCACCTATTTATCCTGCTGTGAACCAAGGGGGTCCTTGGGAAGAGAGGTATGCAATGATTAGGTTAGCTCAGAAGCTGCAGAAATCCAAGAGAAATAAGCGATGGAGAAAGAGAAAAAGAAAGCATGTTGCAGAGCTTTTCCAGAAGGAGCATGCAGATTATGACAGAATTGATCAGGAAGCTGATGAATGGAGGGCTAGGCAAATAGCCAAGGACATGGCGCAGCGCAAGGTGGAAAACATGAAGCAGATTGCCAAGAAAAAAGCAAATGAGGAAAGAAAGCGTCTAGAATCTGAGCTTGAGCTTGCCCTAATGGTCGAGAAACTACAGGAGCTTCGCTCTATGAGAGTTCAAAAAATGAAGAAACAAGGTCATTTTCTGCCAGAAGAAGATGATAAATATCTTGAGCGTGTTAAGGCTGCAGTTGAGGAAGAGGAGCGCCAAGCTGCAAGTGCTGCTCGGACTGATGCTGCCAAGGATGCTATTCTGACCGCGGAAGAGTCGAGGAAGGCTGTGCAGTGTTCAAATTCAAGAGAAGATGATTCTGATCAAGCCAAAAGTGCACCAACACTGGAACAAAACCAGAGAGATCCAGGAATAAGCGGCAGAAATCATCATGCCAGCCAA AAAACAGAGCATGAACTTCA TAAAGATGACAGCAAA GGGCAT ]
[+] EMBL C26109 [ AATNAGGAAAGAAAGCGTCTAGAATCTGAGCTTGAGCTTGCCCTAATGGTCGAGAAACTACAGGAGCTTCGCTCTATGAGAGTTCAAAAAATGAAGAAACAAGGTCATTTTCTGCCAGAAGAAGATGATAAATATCTTGAGCGTGTTAAGGCTGCAGTTGAGGAAGAGGAGCGCCAAGCTGCAAGTGCTGCTCGGACTGATGCTGCCAAGGATGCTATTCTGACCGCGGAAGAGTCGAGGAAGGCTGTTCAGTGTTCAAATTCAAGAGAAGATGATTCTGATCAAGCCAAAAGTGCACCAACACTGGAACAAAACCAGAGAGATCCAGGAATAAGCGGCAGAAATCATCATGCAAGCCAANAAACCAGGGCATGGACTTCATTAAGGTTGNCAGCAAAGGGGCATGGGGCATTTTGGATTCTGTTTTCCAGTCTGNCCTTTTTGGGTCTTCCCTTA ]
[-] EMBL CB674415 [ GTGCACCAACACTGGAACAAAACCAGAGAGATCCAGGAATAAGCGGCAGAAATCATCATGCAAGCCAA AAAACAGAGCATGAACTTCA TAAAGATGACAGCAAA GGGCAT GGGCATTAT GATTCTG TTTCCAGTCTG CCTTTTGAGTTCTACCATTATTATCATGGAAGCAGCTACGACATGGGAACACTCATTGAGGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAGCCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTATTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGCTGCATTTTGGGACTATTGGTTAGGACTTCAGCTTTTCCCCTATGATGAGCCATATAGATGGCCCCGAGAAAAAGATGGCCAACGAAAAAATCGTGGACACCATTAGGAGAAAACAAGAGGTTAGTGAATTGGATGGCATTAGCACCCAGTACTATATATCTCTATAATAGAGTAATAAGGACACGGCATAATGCCTGCTGCCTTTCTTGTTGTGCTTGCTTGCTCCTCCCATTTTCTTATCTCTTTGAGGTGATTAGTGATTACACAGACCAACAACTGAATCCTAAAGGTCGTAATGACAAATTTGATGATACTTGCAATTAATAAAAAGA]
consensusID : consensus_10325#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence
[TGGAAGCAGCTACGACATGGGAACACTCATTGAGGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAGCCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTATTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGCTGCATTTTGGGACTATTGGTTAGGACTTCAGCTTTTCCCCTATGATGAGCCATATAGATGGCCCCGAGAAAAAGATGGCCAACGAAAAAATCGTGGACACCATTAGGAGAAAACAAGAGGTTAGTGAATTGGATGGCATTAGCACCCAGTACTATATATCTCTATAATAGAGTAATAAGGACACGGCATAATGCCTGCTGCCTTTCTTGTTGTGCTTGCTTGCTCCTCCCATTTTCTTATCTCTTTGAGGTGATTAGTGATTACACAGACCAACAACTGAATCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAACTC]
[-] EMBL CF322496 [TGGAAGCAGCTACGACATGGGAACACTCATTGAGGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAGCCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTATTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGCTGCATTTTGGGACTATTGGTTAGGACTTCAGCTTTTCCCCTATGATGAGCCATATAGATGGCCCCGAGAAAAAGATGGCCAACGAAAAAATCGTGGACACCATTAGGAGAAAACAAGAGGTTAGTGAATTGGATGGCATTAGCACCCAGTACTATATATCTCTATAATAGAGTAATAAGGACACGGCATAATGCCTGCTGCCTTTCTTGTTGTGCTTGCTTGCTCCTCCCATTTTCTTATCTCTTTGAGGTGATTAGTGATTACACAGACCAACAACTGAATCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAACTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10325#1 ------------------------------------------------------------
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 CAGGCTAGAAACTCGGTCGATGCTAGCACGCAAGGACCTGACTCGTCTTCAGCAAAATTG 60
consensus_10325#1 ------------------------------------------------------------
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 TCATCAGAGCCTGATGGTTCTTCTGCAGATAGGCCCCGGCATTTCGTTGAGCTTGCTAGA 120
consensus_10325#1 -----CCTCCCCTCTCCCTCCGCTCCGGCGGAGCGCCGCGAAACGCCCGCCGCAACCGAG 55
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 GCTATGAAGATTAGTCAAGACACTCATGAGTCTCTGGCCACAGATGCTGCTAATTATCTT 180
consensus_10325#1 CCCACCGTCGAGGCGATCGGCGGCGGAGGCGAGGGCCGCCGCCTTCCGTCGCAGGGGTCA 115
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 TGTTCTCAGATTCAGAACCTTCTTGCACCTATTTATCCTGCTGTGAACCAAGGGGGTCCT 240
consensus_10325#1 CCTTCTTCGTCCTCCCCCGGTCTCCCCCTGGGAAGCTGCCCGCCATGTTCCGACCACCGG 175
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 TGGGAAGAGAGGTATGCAATGATTAGGTTAGCTCAGAAGCTGCAGAAATCCAAGAGAAAT 300
consensus_10325#1 GTGCTTTCGGGGTCGCACCCCCGCCGCCGCCGCCGCAGCAGCAGCAGCATCAGCCATGGC 235
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 AAGCGATGGAGAAAGAGAAAAAGAAAGCATGTTGCAGAGCTTTTCCAGAAGGAGCATGCA 360
consensus_10325#1 AGTGGCAGCCGCCTTTCCAGCCGCCGGCCGCTACATCCTTTTGGCAGCGGGACAATGTGC 295
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 GATTATGACAGAATTGATCAGGAAGCTGATGAATGGAGGGCTAGGCAAATAGCCAAGGAC 420
consensus_10325#1 GGGAGCATGTGGGGAGGCTGCAGGAAACCATCGAATTAGCCACTGCAGTGATAAATGAGC 355
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 ATGGCGCAGCGCAAGGTGGAAAACATGAAGCAGATTGCCAAGAAAAAAGCAAATGAGGAA 480
consensus_10325#1 TCGAGGAAATTGCGCAGGCTAGAAACTCGGTCGATGCTAGCACGCAAGGACCTGACTCGT 415
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 AGAAAGCGTCTAGAATCTGAGGTAAAGTTAATGCTTACATTGTGGTGTGGAAATCCTGCT 540
consensus_10325#1 CTTCAGCAAAATTGTCATCAGAGCCTGATGGTTCTTCTGCAGATAGGCCCCGGCATTTCG 475
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 TGTCTGTGGACATCTGCGTGGAAATTGTGAGCGCTATGTTTCATTAATTCATTTTCATAC 600
consensus_10325#1 TTGAGCTTGCTAGAGCTATGAAGATTAGTCAAGACACTCATGAGTCTCTGGCCACAGATG 535
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 ACTGCTGAATTACTATACATTGTGATACCTTGAGTTATGAATTTTGTTAAGTTGTAGTAA 660
consensus_10325#1 CTGCTAATTATCTTTGTTCTCAGATTCAGAACCTTCTTGCACCTATTTATCCTGCTGTGA 595
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 GCATTAAGTTACACCATTTTTTATCTTTGACCTTATCTGATTTTCTACGAATTTAGGAAA 720
consensus_10325#1 ACCAAGGGGGTCCTTGGGAAGAGAGGTATGCAATGATTAGGTTAGCTCAGAAGCTGCAGA 655
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 CTCTATAAGCTTGCTTCTAAAATTTCTTAAAGTCTTGTATATTTGTGTTTGATATGCTGC 780
consensus_10325#1 AATCCAAGAGAAATAAGCGATGGAGAAAGAGAAAAAGAAAGCATGTTGCAGAGCTTTTCC 715
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 AACCCAACATCTTCAATTACACCACCTACCTACCTGTTTTCTTTCATTCAGAATTATTGT 840
consensus_10325#1 AGAAGGAGCATGCAGATTATGACAGAATTGATCAGGAAGCTGATGAATGGAGGGCTAGGC 775
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 GCAATCAGTTTGTGAATTCTTGAGTGGTTATTTCAGTATGTTATATTTAGATTCCAAACT 900
consensus_10325#1 A-----AATAGCCAAGGACATGGCGCAGCGCAAGGTGGAAAACATGAAGCAGATTGCCAA 830
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 ATTAATATTCTCTGTAGAAATTGTAAATTCAAGAGCGGCAAATACAATAGTCTTGTTTTC 960
consensus_10325#1 GAAAAAAGAAAATGAGGAAAGAAAGCGTCTAGAATCTGAGCTTGAGCTTGCCCTAATGGT 890
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 TAGAAAACTAATTTTCTCAATACAAATCTTCTATTTTCAGCTTGAGCTTGCCCTAATGGT 1020
consensus_10325#1 CGAGAAACTACAGGAGCTTCGCTCTATGAGAGTTCAAAAAATGAAGAAACAAGGTCATTT 950
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 CGAGAAACTACAGGAGCTTCGCTCTATGAGAGTTCAAAAAATGAAGAAACAAGGTCATTT 1080
consensus_10325#1 TCTGCCAGAAGAAGATGATAAATATCTTGAGCGTGTTAAGGCTGCAGTTGAGGAAGAGGA 1010
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 TCTGCCAGAAGAAGATGATAAATATCTTGAGCGTGTTAAGGCTGCAGTTGAGGAAGAGGA 1140
consensus_10325#1 GCGCCAAGCTGCAAGTGCTGCTCGGACTGATGCTGCCAAGGATGCTATTCTGACCGCGGA 1070
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 GCGCCAAGCTGCAAGTGCTGCTCGGACTGATGCTGCCAAGGATGCTATTCTGACCGCGGA 1200
consensus_10325#1 AGAGTCGAGGAAGGCTGTGCAGTGTTCAAATTCAAGAGAAGATGATTCTGATCAAGCCAA 1130
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 AGAGTCGAGGAAGGCTGTGCAGTGTTCAAATTCAAGAGAAGATGATTCTGATCAAGCCAA 1260
consensus_10325#1 AAGTGCACCAACACTGGAACAAAACCAGAGAGATCCAGGAATAAGCGGCAGAAATCATCA 1190
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 AAGTGCACCAACACTGGAACAAAACCAGAGAGATCCAGGAATAAGCGGCAGAAATCATCA 1320
consensus_10325#1 TGCAAGCCAAAAAACAGAGCATGAACTTCATAAAGATGACAGCAAAGGGCATGGGCATTA 1250
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 TGCAAGCCAAAAAACAGAGCATGAACTTCATAAAGATGACAGCAAAGGGCATGGGCATTA 1380
consensus_10325#1 TGATTCTGTTTCCAGTCTGCCTTTTGAGTTCTACCATTATTATCATGGAAGCAGCTACGA 1310
consensus_10325#2 ---------------------------------------------TGGAAGCAGCTACGA 15
consensus_10325#0 TGATTCTGTTTCCAGTCTGCCTTTTGAGTTCTACCATTATTATCATGGAAGCAGCTACGA 1440
***************
consensus_10325#1 CATGGGAACACTCATTGAGGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAG 1370
consensus_10325#2 CATGGGAACACTCATTGAGGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAG 75
consensus_10325#0 CATGGGAACACTCATTGAGGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAG 1500
************************************************************
consensus_10325#1 CCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTA 1430
consensus_10325#2 CCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTA 135
consensus_10325#0 CCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTA 1560
************************************************************
consensus_10325#1 TTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTC 1490
consensus_10325#2 TTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTC 195
consensus_10325#0 TTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTC 1620
************************************************************
consensus_10325#1 TGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGCTGCAT-----TTTGGG--ACTAT 1543
consensus_10325#2 TGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGCTGCAT-----TTTGGG--ACTAT 248
consensus_10325#0 TGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGGCAAGTAGGTGTTTGAGTTGCTAC 1680
************************************ * **** * ***
consensus_10325#1 TGGTTAGGACT----TCAGCTTTTCCCCTA------TGATGAGCCATATAG---ATGGCC 1590
consensus_10325#2 TGGTTAGGACT----TCAGCTTTTCCCCTA------TGATGAGCCATATAG---ATGGCC 295
consensus_10325#0 TTTTTCCCCTTCATGTCAACTATTAATGCAGAAATTTGATTTAATATGTAGCCAATTGCA 1740
* ** * *** ** ** * **** ** *** ** **
consensus_10325#1 CCGAGAAAAA----GATGGCCAACGAAAA---AATCGTGGACACCATTAG-----GAGAA 1638
consensus_10325#2 CCGAGAAAAA----GATGGCCAACGAAAA---AATCGTGGACACCATTAG-----GAGAA 343
consensus_10325#0 TTGATGAAAATTAAATTGACTAAGCAAAGTTCAATTGCTTGCACTATGAACCCTCAGTTA 1800
** **** ** * ** *** *** * *** ** * *
consensus_10325#1 AACAAGAGGTTAGTGAATTGGATGGCATTAGC-ACCCAGTA-------CTATATATCTCT 1690
consensus_10325#2 AACAAGAGGTTAGTGAATTGGATGGCATTAGC-ACCCAGTA-------CTATATATCTCT 395
consensus_10325#0 AACACTTAATTATCTTATGGTTTCACATGAGTTATCCAATATAAGGCCCTGTGAGTTTCT 1860
**** *** ** * * *** ** * *** ** ** * * ***
consensus_10325#1 ATAATAGAGTAATAAGGACACGGCATAATGCCTGCTGCCTTTCTTGTTGTGCTTGCTTGC 1750
consensus_10325#2 ATAATAGAGTAATAAGGACACGGCATAATGCCTGCTGCCTTTCTTGTTGTGCTTGCTTGC 455
consensus_10325#0 TCACCAGCATAAACACTAAAAAAAATATTACGAAGAAATTGTGTTCCGGTCTATGCTTTT 1920
* ** *** * * * *** * * * * ** ** *****
consensus_10325#1 TCCT---CCCATTTTCTTATCTCTTTGAGGTGATT-AGTGATTACACAGACCAACAACTG 1806
consensus_10325#2 TCCT---CCCATTTTCTTATCTCTTTGAGGTGATT-AGTGATTACACAGACCAACAACTG 511
consensus_10325#0 TCCAGGATGTCTTTTTGCACATCCATGATACGCTCCACTTATGGTCTGAAAATTTTAATC 1980
*** **** * ** *** * * * * ** * * *
consensus_10325#1 AATCCTAAAGCTCGTAATGACAAATTTGATGATACTTGCAATTAATAAAAAGA------- 1859
consensus_10325#2 AATCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAACTC----------------------- 548
consensus_10325#0 AATTTTGTTGACTGTGGGGCAAGATTGATACTGTCAGTGACCCAGTCCTGAACTTCTGAT 2040
*** * * * *
consensus_10325#1 ------------------------------------------------------------
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 AAGTGATAACCACTTCTGCAGTCTTGAGTCACCATTGTAGTTCAAATGTGTTGCTTTGTA 2100
consensus_10325#1 ------------------------------------------------------------
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 AGTTCTATGTAATCAAGTACTAAACATTGGAAACACCATTAAACTTCTTTGCCTTCTCTA 2160
consensus_10325#1 ------------------------------------------------------------
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 AAGAGAACTTATTGTAGTTCATGCCAAGGACCAAATTGGATGTATACAATTCAGCCTTGC 2220
consensus_10325#1 ------------------------------------------------------------
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 GAACTCGTTTTATATTCGGAATCAAGAAAAAATGAAGAAAAATGCTAGAATGGGCATCCC 2280
consensus_10325#1 ------------------------------------------------------------
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 TTTTCTGATAATGGTATGCAGACATGGTGGAGGCTTTTCTATGTGATGATTACTGGCCAC 2340
consensus_10325#1 ------------------------------------------------------------
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 AGGTCCTTTTCTGATCTGTTGAGTAGTTCATGACAACTACCAGATCGTGACTCAAAATCA 2400
consensus_10325#1 ------------------------------------------------------------
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 ATGGGATTTTACATATTAGATCAACCAGTGTTGTTCCTATCCACTGCTCTAATTGTTACG 2460
consensus_10325#1 ------------------------------------------------------------
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 AATGCATGGAGACATCATGTTATACTTATGTACCAATCTGTTCTTATGGTGTTGAACTGA 2520
consensus_10325#1 ------------------------------------------------------------
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 ACGTACAAAACTGTTGTAGGCTGTTGCTTAGACTGTAAGCTATATATTCAACAGGCTGGT 2580
consensus_10325#1 ------------------------------------------------------------
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 GATATACCTTGAATAAATGTTAGGAATCGTTTGCCCCCTTCCTAATGATATTCCATAGTA 2640
consensus_10325#1 ------------------------------------------------------------
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 ACCTGCATCATGAATCACCACCTGAGAAATGAATAGCTTAGCATATGAGCTATAATGTTT 2700
consensus_10325#1 ------------------------------------------------------------
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 CAGCATTTGATCAAACTCCCAGTTCAGCCCAAGATTATCTTGAAATCTAAAACACTGTTG 2760
consensus_10325#1 ------------------------------------------------------------
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 TATGAAAATTACATATTCATAACATAACCTTAGTATTAATTATAGTTATAGTGTTTATTC 2820
consensus_10325#1 ------------------------------------------------------------
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 AGTTAGTACCACAATACCAGTTAAATTTTACCCTATATATCTCTTTAATATGAGGTTTTC 2880
consensus_10325#1 ------------------------------------------------------------
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 ATTGAATATTTATCTACGATGCAATCGGTCCTGAGAGCACTTTAAAAAAATATATATGTT 2940
consensus_10325#1 ------------------------------------------------------------
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 CTACTTTGTTTAAAGTTTCTGAGAAGCTTTGTGTTTGTTGGATCAGATACCCTGGTGAAG 3000
consensus_10325#1 ------------------------------------------------------------
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 ATTTAAACCGAGGAATGTTTTGGATTCAATTTTCTGAGTAAGATAGGACTAAGAAGTGGA 3060
consensus_10325#1 ------------------------------------------------------------
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 CCGGCAAATCTAGACTTGGAACTGTATCTAGCAATAGTCAACAGATACGAGCAAATAACT 3120
consensus_10325#1 ------------------------------------------------------------
consensus_10325#2 ------------------------------------------------------------
consensus_10325#0 TCATAACATGATAGCTTAGATGAATAGCGGATTTGTTCTTTAGCTTATCATTTCAATACA 3180
consensus_10325#1 ---
consensus_10325#2 ---
consensus_10325#0 TTT 3183
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||