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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10328#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 984 fasta sequence
[GCGAAGGTGTCACTGACAGCCATGGCCCACAAGCGCGGCCGTCTTGTTGGTTGGGTGCTTCTCCTCCTCCTCGCCGTGGCTATCGCCGTCGCCGCCGCGGCCACGCCGAGGCAGCTGTTCCTGGTGACCCAGGCGCCGGTCACGCTCACGAACCACCACGGCCAGCTGCTCACGGGGAACTACTCCGTCAACCTGCTCTGGTACGGCCGCTTCACCCCGGCGCAGCGCGCCACCGTCGCTGACTTCTTGCTGTCGATGCCGCCGCCACCGCCTCGCCAGCCGCGACGCGCGGGCGCGGCAGGTTCGCGTACGCGTGGGTGGGGAACGCGGCGGAGCAGTGCCCGGGGGAGTGCGCGTGGCCGTTCCACCAGCCGGCGTACGGCCCTCAGGCGCCGCCGCTGGTGTCGCCGAACGCCGACGTGGTGATGGACGGCATCA-TCATCAGCCTCGCCACGCTGCTCGCCGGGGCGGTGACGAACCCGTACGGCGGCGGGTACTTCCAGGGCCCCACCGAGGCGCCGCTGGAGGCGGTGACGGCCTGCACGGGGATGTTCGGCGCCGGCGCCTACCCGGGGTACCCCGGCCAGCTGCCGGTGGACGCCGCCACCGGCGC-CAGCTACAACGCCGTCGGGGTCGCCGGCCGGCGGTTCCTCCTGCCGGCGATGTGGGACCCCAAGACCTCGCAGTGCTCTACTCTCGTGTAGTAGTACTAGTACAAACCCTCTGATGCGATCGATCGATGGACCAAAATGGCTTGGGCTCGGTGTACGGACGGCTGGGATTAGGGAGTGGAGTGACGTGGT-GTCTCGTTTCTTTT-GTTTTGTGGATATTTCGT-GGTGAACAAAAAAAATGGAAAAAAAAACAGAATGAAGTGGGGTAATGTAATAAACCTAGGCTTTCGTTGTCATGTTCTGTATATATTGGTAAGGCATTGTTCATGGGTTCGTTGATCGTTGACATCTCAAGCAAGGCCGAAAAAAAAAA]
[+] EMBL AK073011 [GCGAAGGTGTCACTGACAGCCATGGCCCACAAGCGCGGCCGTCTTGTTGGTTGGGTGCTTCTCCTCCTCCTCGCCGTGGCTATCGCCGTCGCCGCCGCGGCCACGCCGAGGCAGCTGTTCCTGGTGACCCAGGCGCCGGTCACGCTCACGAACCACCACGGCCAGCTGCTCACGGGGAACTACTCCGTCAACCTGCTCTGGTACGGCCGCTTCACCCCGGCGCAGCGCGCCACCGTCGCTGACTTCTTGCTGTCGATGCCGCCGCCACCGCCTCGCCAGCCGCGACGCGCGGGCGCGGCAGGTTCGCGTACGCGTGGGTGGGGAACGCGGCGGAGCAGTGCCCGGGGGAGTGCGCGTGGCCGTTCCACCAGCCGGCGTACGGCCCTCAGGCGCCGCCGCTGGTGTCGCCGAACGCCGACGTGGTGATGGACGGCATCA TCATCAGCCTCGCCACGCTGCTCGCCGGGGCGGTGACGAACCCGTACGGCGGCGGGTACTTCCAGGGCCCCACCGAGGCGCCGCTGGAGGCGGTGACGGCCTGCACGGGGATGTTCGGCGCCGGCGCCTACCCGGGGTACCCCGGCCAGCTGCCGGTGGACGCCGCCACCGGCGC CAGCTACAACGCCGTCGGGGTCGCCGGCCGGCGGTTCCTCCTGCCGGCGATGTGGGACCCCAAGACCTCGCAGTGCTCTACTCTCGTGTAGTAGTACTAGTACAAACCCTCTGATGCGATCGATCGATGGACCAAAATGGCTTGGGCTCGGTGTACGGACGGCTGGGATTAGGGAGTGGAGTGACGTGGT GTCTCGTTTCTTTT GTTTTGTGGATATTTCGT GGTGAACAAAAAAAATGGAAAAAAAAACAGAATGAAGTGGGGTAATGTAATAAACCTAGGCTTTCGTT ]
[+] EMBL BI805890 [ ggGATG CGGCATCATTCATCA ACTCGCCACGCTGCTCGCCGGGGCGGTGACG ACCCGTAC GC GCGGGTACTT CAGGGCCCCACCGAGGCGCCGCTGGA GCGGTGACGGCCTGCACGGGGATGTTCGGCGCCGGCGCCTACCCGGGGTACCCCGGCCAGCTGCCGGTGGACGCCGCCACCGGCGC CAGCTACAACGCCGTCGGGGTCGCCGGCCGGCGGTTCCTCCTGCCGGCGATGTGGGACCCCAAGACCTCGCAGTGCTCTACTCTCGTGTAGTAGTACTAGTAC AACCCTCTGATGCGATCGATCGATGGACCCAAATGGCTTGGGCTCGGTGTACGGACGGCTGGGATTAGGGAGTGGAGTGACGTGGT GTCTCGTTTCTTTT GTTTTGTGGATATTTCGT GGTGAAC AAAAAAATGGAAAAAAAAACAGAATGAAGTGGGGTAATGTAATAAACCTAGGCTTTCGTTGTCATGTTCTGTATATATTGGTAAGGCATTGTTCATGGGTTCGTTGATCGTTGACATCTCAAGCAAGGCCGAAAAAAAAAA]
[+] EMBL AU029795 [ AGGGCCCCACCGAGGCGCCGCTGGAGGCGTTGACGGCCTGCACGGGGATGTTCGGCGCCGGCGCCTACCCGGGGTACCCCGGCCAGCTGCCGGTGGACGCCGCCACCGG GCNCAGCTACAACGCCGTCGGGGTCGCCGGCCGG GGTTCCTCCTGCCGGCGATGTGGGACCCCAAGACCTCGCAGTGCTCTACTCTCGTGTAGTAGTACTAGTACAAACCCTCTGATGCGATCGATCGATGGACCAAAATGGCTTNGGCTCGGTGTACGGACGGCTGGGATTAGGGAGTTGAGTTACGTTGTGGTCTCGTTTCTTTTGGTTTTGTGGATATTTCGTGGGTGAACAAAAAAAATTGGAAAAAAAACNGAATTAAGTTGGGTAATGTAATAAACCTAAGCTTTCGTTGTAATGTTCTtttaaaaaa ]
[-] EMBL D42478 [ TTCCT CTGCCGGCGATGT GGACCCCAAGACC C CAGTGCTCTACTCTCGTGTAGTAGTACTAGTACAAACCCTCTGATGCGATCGATCGAT GA CAAAATGGCTTGGGCTCGGTGTACGGACGGCTGGGATTAGGGAGTGGAGT ACGTGGT GTCTCGTTTCTTTT G ]
[+] EMBL AU108921 [ GCTTGGGCTCGGTGTACGGACGGCTGGGATTAGGGAGTGGAGTGACGTGGT GTCTCGTTTCTTTT GTTTTGTGGATATTTCGT GGTGAACAAAAAAAATGGAAAAAAAAACAGAATGAAGTaaaaaa ]
consensusID : consensus_10328#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence
[GTCGGTCGAGTCGNGGNGGGCCACCACGGCAGCGGTACCACCCGGGCAGCCGAGCGGCTCACAGCTCGGCCGCCAGGTGCTCAGACAGCAGTCAGCTCTCCCTCGGCCAGGCGGCTGTCGGAGACCTCCCTCGCCGCGCTGGCCGCGCGCCTCTCCCCGCACCGGGGCTCCATCGCCGTGGTGATAACTGCCCCCGACGTCCTCGTCGACGGCTTCTGCCTCTCCCACTGCGGCCTCCACGCGTCGGCCACCTCAGGCCGCCGCCGCCGCCGCCACCGCCTCGCCAGCCGCGACGCGCGGGCGCGGCAGGTTCGCGTACGCGTGGGTGGGGAACGCGGCGGAGCAGTGCCCGGGGGAGTGCGCGTGGCCGTTCCACCAGCCGGCGTACGGCCCTCAGGCGCCGCCGCTGGTGTCGCCGAACGCCGACG]
[+] EMBL AU181641 [GTCGGTCGAGTCGNGGNGGGCCACCACGGCAGCGGTACCACCCGGGCAGCCGAGCGGCTCACAGCTCGGCCGCCAGGTGCTCAGACAGCAGTCAGCTCTCCCTCGGCCAGGCGGCTGTCGGAGACCTCCCTCGCCGCGCTGGCCGCGCGCCTCTCCCCGCACCGGGGCTCCATCGCCGTGGTGATAACTGCCCCCGACGTCCTCGTCGACGGCTTCTGCCTCTCCCACTGCGGCCTCCACGCGTCGGCCACCTCAGGCCGCCGCCGCCGCCGCCACCGCCTCGCCAGCCGCGACGCGCGGGCGCGGCAGGTTCGCGTACGCGTGGGTGGGGAACGCGGCGGAGCAGTGCCCGGGGGAGTGCGCGTGGCCGTTCCACCAGCCGGCGTACGGCCCTCAGGCGCCGCCGCTGGTGTCGCCGAACGCCGACG]
consensusID : consensus_10328#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence
[CAGCCATGGCCCACAAGCGCGGCCGTNTTGTTGGTTGGGTGCTTCTCCTCCTCCTCGCCGTGGCTATCGCCGGCGCCGCCCGGCCACGCCGAGGCAGCTGTTCCTGGTGACCCAGGCGCCGGTNACGCTCACGAACCACCACGGCCAGCTGCTCACGGGGAACTACTCCGTCAACCTGCTCTGGTACGGCCGCTTCACCCCGGCGCANGCGCANCCTGTCGCTGACTTCTTGCTGTCGATGTCGTCGCCGTCGGGCGGCGGAGGCTGCGGCGGTGTCTGGTGGTCCGGNG]
[+] EMBL C27449 [CAGCCATGGCCCACAAGCGCGGCCGTNTTGTTGGTTGGGTGCTTCTCCTCCTCCTCGCCGTGGCTATCGCCGGCGCCGCCCGGCCACGCCGAGGCAGCTGTTCCTGGTGACCCAGGCGCCGGTNACGCTCACGAACCACCACGGCCAGCTGCTCACGGGGAACTACTCCGTCAACCTGCTCTGGTACGGCCGCTTCACCCCGGCGCANGCGCANCCTGTCGCTGACTTCTTGCTGTCGATGTCGTCGCCGTCGGGCGGCGGAGGCTGCGGCGGTGTCTGGTGGTCCGGNG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10328#0 -GCGAAGGTGTCACTGACAGCCATGGCCCACAAGCGCGGCCGTCTTGTTGGTTGGGTGCT 59
consensus_10328#2 -----------------CAGCCATGGCCCACAAGCGCGGCCGTNTTGTTGGTTGGGTGCT 43
consensus_10328#1 GTCGGTCGAGTCGNGGNGGGCCAC--CACGGCAGCGGTACCACCCGGGCAGCCGAGCGGC 58
**** * * **** ** * * * * *
consensus_10328#0 TCTCCTCCTCCTCGCCGTG-GCTATCGCCGTCGCCGCCGCGGCCACGCCGAGGCAGCTGT 118
consensus_10328#2 TCTCCTCCTCCTCGCCGTG-GCTATCGCCGGCGCCGCC-CGGCCACGCCGAGGCAGCTGT 101
consensus_10328#1 TCACAGCTCGGCCGCCAGGTGCTCAGACAGCAGTCAGCTCTCCCTCGGCCAGGCGGCTGT 118
** * * **** * *** * * * * * * ** ** * **** *****
consensus_10328#0 TCCTGGTGACCCAGGC---GCCGGTCACGC---TCACGAACCACCACGGCCAGCTGCTCA 172
consensus_10328#2 TCCTGGTGACCCAGGC---GCCGGTNACGC---TCACGAACCACCACGGCCAGCTGCTCA 155
consensus_10328#1 CGGAGACCTCCCTCGCCGCGCTGGCCGCGCGCCTCTCCCCGCACCGGGGCTCCATCGCCG 178
* *** ** ** ** *** ** * **** *** * *
consensus_10328#0 CGGGGAACTACTCCGTCAACCTGCTCTGGTACGGCCGCT-TCACCCCGGCGCAGCGCGCC 231
consensus_10328#2 CGGGGAACTACTCCGTCAACCTGCTCTGGTACGGCCGCT-TCACCCCGGCGCAN-GCGCA 213
consensus_10328#1 TGGTGATAACTGCCCCCGACGTCCTCGTCGACGGCTTCTGCCTCTCCCACTGCGGCCTCC 238
** ** ** * ** * *** ***** ** * * ** * * *
consensus_10328#0 ACC-GTCGCTGACTTCTTGCTGTCGATGCCGCCGCCACCGCCTCGCCAGCCGCGACGCGC 290
consensus_10328#2 NCCTGTCGCTGACTTCTTGCTGTCGATGTCGTCGCCGTCGGG-CGGCGGAGGCTGCGGCG 272
consensus_10328#1 ACGCGTCGGCCACCTCAGGCCGCCGCCGCCGCCGCCACCGCCTCGCCAGCCGCGACGCGC 298
* **** ** ** ** * ** * ** **** ** ** * * ** **
consensus_10328#0 GGGCGCGGCAGGTTCGCGTACGCGTGGGTGGGGAACGCGGCGGAGCAGTGCCCGGGGGAG 350
consensus_10328#2 GTGTCTGGTGGTCCGGNG------------------------------------------ 290
consensus_10328#1 GGGCGCGGCAGGTTCGCGTACGCGTGGGTGGGGAACGCGGCGGAGCAGTGCCCGGGGGAG 358
* * ** * * *
consensus_10328#0 TGCGCGTGGCCGTTCCACCAGCCGGCGTACGGCCCTCAGGCGCCGCCGCTGGTGTCGCCG 410
consensus_10328#2 ------------------------------------------------------------
consensus_10328#1 TGCGCGTGGCCGTTCCACCAGCCGGCGTACGGCCCTCAGGCGCCGCCGCTGGTGTCGCCG 418
consensus_10328#0 AACGCCGACGTGGTGATGGACGGCATCATCATCAGCCTCGCCACGCTGCTCGCCGGGGCG 470
consensus_10328#2 ------------------------------------------------------------
consensus_10328#1 AACGCCGACG-------------------------------------------------- 428
consensus_10328#0 GTGACGAACCCGTACGGCGGCGGGTACTTCCAGGGCCCCACCGAGGCGCCGCTGGAGGCG 530
consensus_10328#2 ------------------------------------------------------------
consensus_10328#1 ------------------------------------------------------------
consensus_10328#0 GTGACGGCCTGCACGGGGATGTTCGGCGCCGGCGCCTACCCGGGGTACCCCGGCCAGCTG 590
consensus_10328#2 ------------------------------------------------------------
consensus_10328#1 ------------------------------------------------------------
consensus_10328#0 CCGGTGGACGCCGCCACCGGCGCCAGCTACAACGCCGTCGGGGTCGCCGGCCGGCGGTTC 650
consensus_10328#2 ------------------------------------------------------------
consensus_10328#1 ------------------------------------------------------------
consensus_10328#0 CTCCTGCCGGCGATGTGGGACCCCAAGACCTCGCAGTGCTCTACTCTCGTGTAGTAGTAC 710
consensus_10328#2 ------------------------------------------------------------
consensus_10328#1 ------------------------------------------------------------
consensus_10328#0 TAGTACAAACCCTCTGATGCGATCGATCGATGGACCAAAATGGCTTGGGCTCGGTGTACG 770
consensus_10328#2 ------------------------------------------------------------
consensus_10328#1 ------------------------------------------------------------
consensus_10328#0 GACGGCTGGGATTAGGGAGTGGAGTGACGTGGTGTCTCGTTTCTTTTGTTTTGTGGATAT 830
consensus_10328#2 ------------------------------------------------------------
consensus_10328#1 ------------------------------------------------------------
consensus_10328#0 TTCGTGGTGAACAAAAAAAATGGAAAAAAAAACAGAATGAAGTGGGGTAATGTAATAAAC 890
consensus_10328#2 ------------------------------------------------------------
consensus_10328#1 ------------------------------------------------------------
consensus_10328#0 CTAGGCTTTCGTTGTCATGTTCTGTATATATTGGTAAGGCATTGTTCATGGGTTCGTTGA 950
consensus_10328#2 ------------------------------------------------------------
consensus_10328#1 ------------------------------------------------------------
consensus_10328#0 TCGTTGACATCTCAAGCAAGGCCGAAAAAAAAAA 984
consensus_10328#2 ----------------------------------
consensus_10328#1 ----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||