These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10335#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1054 fasta sequence [CCCCACGATAATTACGAAGCAGAGCCAGCCACCACGCACAGCTCCGCAAGTCCACAACTCCCTCTCCCTCTCTAGTCTCTCTCTCCTCCCCCTTCTCGAAGCACGCTGCCGCCGCCTCCTCTCCCCGCGCCGCGCGCCTCGCCGAGTTAGGGTTCCGGCGAGCTCGGGGCCTTTCTCCGGCGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGC-----GATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATCAGAATAAGTACAAGTCAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGGCTTTGTGTTGATAGTTTATATGGGTCACCTCTATATCTGGGCCATGGTGGTTGTTATTCAAATATTCATGGCCAAAGAGCTTTTTAACCTACTCAGAAAATCCAGTGAAGAAAAACAACTACCAGGTTTCAGGCTACTGAATTGGCACTTCTTTTTCACAGCAATGTTGTTTACTTATGGGCGTTTTCTTAGTCGACAGCTTGTTAACACAGTAACTTCAGATCACTTATTGTATAAGGTTGTCAGTGGTCTCATAAAGTATCAGATGTTCATTTGCTATTTTCTTTACATTGCTGGATTTGTCTGGTTTATTTTGACTCTGAAGAAAAAGACATACAAGTATCAGTTCAAACAATATGCCTGGACGCACATGATCCTTTTAACGGTTTTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTGGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCTATTTGGGTTCTTTCTTGGGAGAACACCTCTGATCAAGTTATCTCCAAAGAAAACTTGGGAAGGTTTTATTGGTGCATCTGTGACAACTATCATATCTGCTTTTGTGTTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGC] [+] EMBL AK071777 [CCCCACGATAATTACGAAGCAGAGCCAGCCACCACGCACAGCTCCGCAAGTCCACAACTCCCTCTCCCTCTCTAGTCTCTCTCTCCTCCCCCTTCTCGAAGCACGCTGCCGCCGCCTCCTCTCCCCGCGCCGCGCGCCTCGCCGAGTTAGGGTTCCGGCGAGCTCGGGGCCTTTCTCCGGCGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGC GATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATCAGAATAAGTACAAGTCAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGGCTTTGTGTTGATAGTTTATATGGGTCACCTCTATATCTGGGCCATGGTGGTTGTTATTCAAATATTCATGGCCAAAGAGCTTTTTAACCTACTCAGAAAATCCAGTGAAGAAAAACAACTACCAGGTTTCAGGCTACTGAATTGGCACTTCTTTTTCACAGCAATGTTGTTTACTTATGGGCGTTTTCTTAGTCGACAGCTTGTTAACACAGTAACTTCAGATCACTTATTGTATAAGGTTGTCAGTGGTCTCATAAAGTATCAGATGTTCATTTGCTATTTTCTTTACATTGCTGGATTTGTCTGGTTTATTTTGACTCTGAAGAAAAAGACATACAAGTATCAGTTCAAACAATATGCCTGGACGCACATGATCCTTTTAACGGTTTTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTGGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCTATTTGGGTTCTTTCTTGGGAGAACACCTCTGATCAAGTTATCTCCAAAGAAAACTTGGGAAGGTTTTATTGGTGCATCTGTGACAACTATCATATCTGCTTTTGTGTTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGC] [+] EMBL AK059301 [ CTCTAGTCTCTCTCTCCTCCCCCTTCTCGAAGCACGCTGCCGCCGCCTCCTCTCCCCGCGCCGCGCGCCTCGCCGAGTTAGGGTTCCGGCGAGCTCGGGGCCTTTCTCCGGCGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGCGGTGAGATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATCAGAATAAGTACAAGTCAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGGCTTTGTGTTGATAGTTTATATGGGTCACCTCTATATCTGGGCCATGGTGGTTGTTATTCAAATATTCATGGCCAAAGAGCTTTTTAACCTACTCAGAAAATCCAGTGAAGAAAAACAACTACCAGGTTTCAGGCTACTGAATTGGCACTTCTTTTTCACAGCAATGTTGTTTACTTATGGGCGTTTTCTTAGTCGACAGCTTGTTAACACAGTAACTTCAGATCACTTATTGTATAAGGTTGTCAGTGGTCTCATAAAGTATCAGATGTTCATTTGCTATTTTCTTTACATTGCTGGATTTGTCTGGTTTATTTTGACTCTGAAGAAAAAGACATACAAGTATCAGTTCAAACAATATGCCTGGACGCACATGATCCTTTTAACGGTTTTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTGGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCTATTTGGGTTCTTTCTTGGGAGAACACCTCTGATCAAGTTATCTCCAAAGAAAACTTGGGAAGGTTTTATTGGTGCATCTGTGACAACTATCATATCTGCTTTTGTGTTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGC] [+] EMBL CB669661 [ CTCTAGTCCCTTTCTCCTCCCCCTTCTCGAAGCACGCTGCCGCCGCCTCCTCTCCCCGCGCCGCGCGCCTCGCCGAGTTAGGGTTCCGGCGAGCTCGGGGCCTTTCTCCGGCGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGC GATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATCAGAATAAGTACAAGTCAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGGCTTTGTGTTGATAGTTTATATGGGTCACCTCTATATCTGGGCCATGGTGGTTGTTATTCAAATATTCATGGCCAAAGAGCTTTTTAACCTACTCAGAAAATCCAGTGAAGAAAAACAACTACCAGGTTTCAGGCTACTGAATTGGCACTTCTTTTTCACAGCAATGTTGTTTACTTATGGGCGTTTTCTTAGTCGACAGCTTGTTAACACAGTAACTTCAGATCACTTATTGTATAAGGTTGTCAGTGGTCTCATAAAGTATCAGATGTTCATTTGCTATTTTCTTTACATTGCTGGATTTGTCTGGTTTATTTTGACTCTGAAGAAAAAGACATACAAGTATCAGTTCAAACAATATGCCTGGACGCACATGATCCTTTTAACGGTTTTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTGGTTTCTGGTGCCTGCTTCTCTCATGGTGA TAACGACATTGCTGCC ] [+] EMBL CB675472 [ CCCTTCTCGAAGCACGCTGCCGCCGCCTCCTCTCCCCGCGCCGCGCGCCTCGCCGAGTTAGGGTTCCGGCGAGCTCGGGGCCTTTCTCCGGCGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGC GATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATCAGAATAAGTACAAGTCAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGGCTTTGTGTTGATAGTTTATATGGGTCACCTCTATATCTGGGCCATGGTGGTTGTTATTCAAATATTCATGGCCAAAGAGCTTTTTAACCTACTCAGAAAATCCAGTGAAGAAAAACAACTACCAGGTTTCAGGCTACTGAATTGGCACTTCTTTTTCACAGCAATGTTGTTTACTTATGGGCGTTTTCTTAGTCGACAGCTTGTTAACACAGTAACTTCAGATCACTTATTGTATAAGGTTGTCAGTGGTCTCATAAAGTATCAGATGTTCATTTGCTATTTTCTTTACATTGCTGGATTTGTCTGGTTTATTTTGACTCTGAAGAAAAAGACATACAAGTATCAGTTCAAACAATATGCCTGGACGCACATGATCCTTTTAACGGTTTTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAAGGATGTTCTGGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGC ] [+] EMBL CB678249 [ caccctGCGAAGACGTCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATCAGAATAAGTACAAGTCAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGGCTTTGTGTTGATAGTTTATATGGGTCACCTCTATATCTGGGCCATGGTGGTTGTTATTCAAATATTCATGGCCAAAGAGCTTTTTAACCTACTCAGAAAATCCAGTGAAGAAAAACAACTACCAGGTTTCAGGCTACTGAATTGGCACTTCTTTTTCACAGCAATGTTGTTTACTTATGGGCGTTTTCTTAGTCGACAGCTTGTTAACACAGTAACTTCAGATCACTTATTGTATAAGGTTGTCAGTGGTCTCATAAAGTATCAGATGTTCATTTGCTATTTTCTTTACATTGCTGGATTTGTCTGGTTTATTTTGACTCTGAAGAAAAAGACATACAAGTATCAGTTCAAACAATATGCCTGGACGCACATGATCCTTTTAACGGTTTTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTGGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCTATTTGGGTTCTTTCTTGGGAGAACACCTCTGATCAAGTTATCTCCAAAGAAAACTTGGGAAGGTTTTATTGGTGCATCTGTGACAACTATCATA ] [+] EMBL CB667578 [ GATCACTTATTGTATAAGGTTGTCAGTGGTCTCATAAAGTATCAGATGTTCATTTGCTATTTTCTTTACATTGCTGGATTTGTCTGGTTTATTTTGACTCTGAAGAAAAAGACATACAAGTATCAGTTCAAACAATATGCCTGGACGCACATGATCCTTTTAACGGTTTTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTGGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCTATTTGGGTTCTTTCTTGGGAGAACACCTCTGATCAAGTTATCTCCAAAGAAAACTTGGGAAGGTTTTATTGGTGCATCTGTGACAACTATCATATCTGCTTTTGTGTTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGC] consensusID : consensus_10335#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [CGAAGCAGAGCCAGCCACCACGCACAGCTCCGCAAGTCCACAACTCCCTCTCCCTCTCTAGTCTCTCTCTCCTCCCCCTTCTCGAAGCACGCTGCCGCCGCCTCCTCTCCCCGCGCCGCGCGCCTCGCCGAGTTAGGGTTCCGGCGAGCTCGGGGCCTTTCTCCGGCGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGCGATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATCAGAATAAGTACAAGTTAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGGCTTTGTGTTTGAATAGTTTAATATGGGGGTCCCCCCCCTATTTATTNTGGGGGCCAGGGGGGGGGGGGGTTATTCCAAAAAATTTTTGGGGGGCGAAAAGAATTTTTTTTTTCCACACCCCAAAAAAAAACGGGGGAGGAGAAAAAAACAAAAAACCCCCNTCTTTTCCCGCCCAAAAGAGAAGTGCCCTCTTTTTTT] [+] EMBL CA754657 [CGAAGCAGAGCCAGCCACCACGCACAGCTCCGCAAGTCCACAACTCCCTCTCCCTCTCTAGTCTCTCTCTCCTCCCCCTTCTCGAAGCACGCTGCCGCCGCCTCCTCTCCCCGCGCCGCGCGCCTCGCCGAGTTAGGGTTCCGGCGAGCTCGGGGCCTTTCTCCGGCGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGCGATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATCAGAATAAGTACAAGTTAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGGCTTTGTGTTTGAATAGTTTAATATGGGGGTCCCCCCCCTATTTATTNTGGGGGCCAGGGGGGGGGGGGGTTATTCCAAAAAATTTTTGGGGGGCGAAAAGAATTTTTTTTTTCCACACCCCAAAAAAAAACGGGGGAGGAGAAAAAAACAAAAAACCCCCNTCTTTTCCCGCCCAAAAGAGAAGTGCCCTCTTTTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10335#0 CCCCACGATAATTACGAAGCAGAGCCAGCCACCACGCACAGCTCCGCAAGTCCACAACTC 60 consensus_10335#1 --------------CGAAGCAGAGCCAGCCACCACGCACAGCTCCGCAAGTCCACAACTC 46 ********************************************** consensus_10335#0 CCTCTCCCTCTCTAGTCTCTCTCTCCTCCCCCTTCTCGAAGCACGCTGCCGCCGCCTCCT 120 consensus_10335#1 CCTCTCCCTCTCTAGTCTCTCTCTCCTCCCCCTTCTCGAAGCACGCTGCCGCCGCCTCCT 106 ************************************************************ consensus_10335#0 CTCCCCGCGCCGCGCGCCTCGCCGAGTTAGGGTTCCGGCGAGCTCGGGGCCTTTCTCCGG 180 consensus_10335#1 CTCCCCGCGCCGCGCGCCTCGCCGAGTTAGGGTTCCGGCGAGCTCGGGGCCTTTCTCCGG 166 ************************************************************ consensus_10335#0 CGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGCGATCAAATAGCAGCGATGGAAAG 240 consensus_10335#1 CGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGCGATCAAATAGCAGCGATGGAAAG 226 ************************************************************ consensus_10335#0 GGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACG 300 consensus_10335#1 GGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACG 286 ************************************************************ consensus_10335#0 TCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGA 360 consensus_10335#1 TCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGA 346 ************************************************************ consensus_10335#0 TCAGAATAAGTACAAGTCAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGG 420 consensus_10335#1 TCAGAATAAGTACAAGTTAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGG 406 ***************** ****************************************** consensus_10335#0 CTTTGTGTT--GATAGTTTA---TATGGGTCACCTCTATATCT-------GGGCCATGGT 468 consensus_10335#1 CTTTGTGTTTGAATAGTTTAATATGGGGGTCCCCCCCCTATTTATTNTGGGGGCCAGGGG 466 ********* ******** * ***** ** * *** * ****** ** consensus_10335#0 GGTTG----TTATTC--AAATATTCATGGCCAAAGAGCTTTTTAACCTACTCAGAAAATC 522 consensus_10335#1 GGGGGGGGGTTATTCCAAAAAATTTTTGGGGGGCGAAAAGAATTTTTTTTTTCCACACCC 526 ** * ****** *** *** *** ** * * * * * * consensus_10335#0 CAGTGAAGAAAAACAACTACCAGGTTTCAGGCTACTGAATTGGCACTTCTTTTTCACAGC 582 consensus_10335#1 CA---AAAAAAAACGGGGGAGGAGAAAAAAACAAAAAACCCCCNTCTTTTCCCGCCCAAA 583 ** ** ****** * * * * * *** * * ** consensus_10335#0 AATGTTGTTTACTTATGGGCGTTTTCTTAGTCGACAGCTTGTTAACACAGTAACTTCAGA 642 consensus_10335#1 AGAGAAGTGCCCTC-------TTTTTTT-------------------------------- 604 * * ** ** **** ** consensus_10335#0 TCACTTATTGTATAAGGTTGTCAGTGGTCTCATAAAGTATCAGATGTTCATTTGCTATTT 702 consensus_10335#1 ------------------------------------------------------------ consensus_10335#0 TCTTTACATTGCTGGATTTGTCTGGTTTATTTTGACTCTGAAGAAAAAGACATACAAGTA 762 consensus_10335#1 ------------------------------------------------------------ consensus_10335#0 TCAGTTCAAACAATATGCCTGGACGCACATGATCCTTTTAACGGTTTTTGCACAATCTTC 822 consensus_10335#1 ------------------------------------------------------------ consensus_10335#0 TTTTACCGTGGCAAATATATTTGAAGGGATGTTCTGGTTTCTGTTGCCTGCTTCTCTCAT 882 consensus_10335#1 ------------------------------------------------------------ consensus_10335#0 TGTGATTAACGACATTGCTGCCTATCTATTTGGGTTCTTTCTTGGGAGAACACCTCTGAT 942 consensus_10335#1 ------------------------------------------------------------ consensus_10335#0 CAAGTTATCTCCAAAGAAAACTTGGGAAGGTTTTATTGGTGCATCTGTGACAACTATCAT 1002 consensus_10335#1 ------------------------------------------------------------ consensus_10335#0 ATCTGCTTTTGTGTTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGC 1054 consensus_10335#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||