These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10358#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1071 fasta sequence [TGACTGGACTGAAGGAGTAGAAAGCGTTTCATCTGCTAGCTCTCCCTGCCATTCCAGTCATTGGCATTGTTGTTTCCTGTCCACTGACTCGCAGTTCATCCCGGATTCTTCTCCTCTTTCTTCGCCGCCGGCTAGCCGGTGTTCGCGCTCCGGCGGCATCAGACATGTCGAAGAAAATCGTGGTGAAGCTGAACGTGCACGACAAGGCGGAGAAGCAGAAGGCCATGAAGGCCGTCTCGGCGCTCATCGGCATCGACGAGCTGTCCATGGACATGGCGAGCCAGAAGATGACGGTGATCGGGATGGTGGACCCGGTGAACGTGGTGAGCAAGCTGCGCAAGTCGTGGGCGGCGACCATCGAGTCCGTCGGGCCGGCGAAGGAGCCGGAGAAGAAGGAGGAGAAGAAGGACGGCGGCGGCGACGGCAAGAAGGACGGCGGCGGCGACGGCAAGAAGGAAGGCGAGGCCGGGGACAAGAAGGACGGCGATGCGGCCAAGAAGGACGGCGACAAGGACGGCGAGGCCAAGAAGGAGGACGGCGACAAGAAGCCGGCGGCGCCGACGGAGCAGCAGCTCTTCGCCGAGCTCATGAACCAGTACTACCACCGGCCGGCGGCGTACGGCTACAACCCTTACATGTCCGTGCCACCACACTACGTCGTGCAGAGCATGGAGGAAAACCCCAACTCCTGCGCCATCTGCTGAACTCGATCGATGCCGCCATGGCTAGAGGTAGTAGCCGAGTACGTACACAGCATGTGTAGTACTGTATACGTCTACGTGTACGCACGAGTTACGACGCAAATCACTATGCATGAATGCAAGCATGCTAGCTACTACATGTCCAGTTACATGGTTAAAAGTTGTTATATCTTACTACCGAGGTAGTAACTAGTTCTAATGCTGTAATTTTGGTGATAAGGAAGATATGTATGCACCATATGTCTGTATATACTACTCTCCGTATAGTACGTGTCAACAGGCAGGAAATCTTGATAGTTTGGAACTTTGTCATCCAAGAAAATCATAATGTAATCATCTATAGCTGCAGTTTTGTTTTTAAAAAAAAAAA] [+] EMBL CF312688 [TGACTGGACTGAAGGAGTAGAAAGCGTTTCATCTGCTAGCTCTCCCTGCCATTCCAGTCATTGGCATTGTTGTTTCCTGTCCACTGACTCGCAGTTCATCCCGGATTCTTCTCCTCTTTCTTCGCCGCCGGCTAGCCGGTGTTCGCGCTCCGGCGGCATCAGACATGTCGAAGAAAATCGTGGTGAAGCTGAACGTGCACGACAAGGCGGAGAAGCAGAAGGCCATGAAGGCCGTCTCGGCGCTCATCGGCATCGACGAGCTGTCCATGGACATGGCGAGCCAGAAGATGACGGTGATCGGGATGGTGGACCCGGTGAACGTGGTGAGCAAGCTGCGCAAGTCGTGGGCGGCGACCATCGAGTCCGTCGGGCCGGCGAAGGAGCCGGAGAAGAAGGAGGAGAAGAAGGACGGCGGCGGCGACGGCAAGAAGGACGGCGGCGGCGACGGCAAGAAGGAAGGCGAGGC ] [+] EMBL CF281282 [ TGAAGGAGTAGAAAGCGTTTCATCTGCTAGCTCTCCCCGCCATTCCAGTCATTGGCATTGTTGTTTCCTGTCCACTGACTCGCAGTTCATCCCGGATTCTTCTCCTCTTTCTTCGCCGCCGGCTAGCCGGTGTTCGCGCTCCGGCGGCATCAGACATGTCGAAGAAAATCGTGGTGAAGCTGAACGTGCACGACAAGGCGGAGAAGCAGAAGGCCATGAAGGCCGTCTCGGCGCTCATCGGCATCGACGAGCTGTCCATGGACATGGCGAGCCAGAAGATGACGGTGATCGGGATGGTGGACCCGGTGAACGTGGTGAGCAAGCTGCGCAAGTCGTGGGCGGCGACCATCGAGTCCGTCGGGCCGGCGAAGGAGCCGGAGAAGAAGGAGGAGAAGAAGGACGGCGGCGGCGACGGCAAGAAGGACGGCGGCGGCGACGGCAAGAAGGAAGGCGAGGCCGGGGACAAGAAGGACGGCGATGCGGCCAAGAAGGACGGCGACAAGGACGGCGAGGCCAAGAATGAGGACGGCGACAAGAAGCCGGCGGCGCCGACGGAGCAGCAGCTCTTCGCCGAGCTCATGAACCAGTACTACCACCGGCCGGCGGCGTACGGCTACAACCCTTACATGTCCGTGCCACCACACTACGTCGTGCAGAGCATGGAGGAAAACCCCAACTCCTGCGCCATCTGCTGAAC ] [+] EMBL AK069934 [ CATCTGCTAGCTCTCCCTGCCATTCCAGTCATTGGCATTGTTGTTTCCTGTCCACTGACTCGCAGTTCATCCCGGATTCTTCTCCTCTTTCTTCGCCGCCGGCTAGCCGGTGTTCGCGCTCCGGCGGCATCAGACATGTCGAAGAAAATCGTGGTGAAGCTGAACGTGCACGACAAGGCGGAGAAGCAGAAGGCCATGAAGGCCGTCTCGGCGCTCATCGGCATCGACGAGCTGTCCATGGACATGGCGAGCCAGAAGATGACGGTGATCGGGATGGTGGACCCGGTGAACGTGGTGAGCAAGCTGCGCAAGTCGTGGGCGGCGACCATCGAGTCCGTCGGGCCGGCGAAGGAGCCGGAGAAGAAGGAGGAGAAGAAGGACGGCGGCGGCGACGGCAAGAAGGACGGCGGCGGCGACGGCAAGAAGGAAGGCGAGGCCGGGGACAAGAAGGACGGCGATGCGGCCAAGAAGGACGGCGACAAGGACGGCGAGGCCAAGAAGGAGGACGGCGACAAGAAGCCGGCGGCGCCGACGGAGCAGCAGCTCTTCGCCGAGCTCATGAACCAGTACTACCACCGGCCGGCGGCGTACGGCTACAACCCTTACATGTCCGTGCCACCACACTACGTCGTGCAGAGCATGGAGGAAAACCCCAACTCCTGCGCCATCTGCTGAACTCGATCGATGCCGCCATGGCTAGAGGTAGTAGCCGAGTACGTACACAGCATGTGTAGTACTGTATACGTCTACGTGTACGCACGAGTTACGACGCAAATCACTATGCATGAATGCAAGCATGCTAGCTACTACATGTCCAGTTACATGGTTAAAAGTTGTTATATCTTACTACCGAGGTAGTAACTAGTTCTAATGCTGTAATTTTGGTGATAAGGAAGATATGTATGCACCATATGTC ] [+] EMBL CF296022 [ TCTGCTAGCTCTCCCTGCCATTCCAGTCATTGGCATTGTTGTTTCCTGTCCACTGACTCGCAGTTCATCCCGGATTCTTCTCCTCTTTCTTCGCCGCCGGCTAGCCGGTGTTCGCGCTCCGGCGGCATCAGACATGTCGAAGAAAATCGTGGTGAAGCTGAACGTGCACGACAAGGCGGAGAAGCAGAAGGCCATGAAGGCCGTCTCGGCGCTCATCGGCATCGACGAGCTGTCCATGGACATGGCGAGCCAGAAGATGACGGTGATCGGGATGGTGGACCCGGTGAACGTGGT ] [-] EMBL CF281283 [ AGGCCAAGAAGGAGGACGGCGACAAGAAGCCGGCGGCGCCGACGGAGCAGCAGCTCTTCGCCGAGCTCATGAACCAGTACTACCACCGGCCGGCGGCGTACGGCTACAACCCTTACATGTCCGTGCCACCACACTACGTCGTGCAGAGCATGGAGGAAAACCCCAACTCCTGCGCCATCTGCTGAACTCGATCGATGCCGCCATGGCTAGAGGTAGTAGCCGAGTACGTACACAGCATGTGTAGTACTGTATACGTCTACGTGTACGCACGAGTTACGACGCAAATCACTATGCATGAATGCAAGCATGCTAGCTACTACATGTCCAGTTACATGGTTAAAAGTTGTTATATATTACTACCGAGGTAGTAACTAGTTCTAATGCTGTAATTTTAGTAATAAGGAAGATATGTATGCACCATATGTCTGTATATACTACTCTCCGTATAGTACGTGTCAACAGGCAGGAAATCTTGATAGTTTGGAACTTTGTCATCCAAGAAAATCATAATGTAATCATCTATAGCTGCAGTTTTGTTTTTAAAAAAAAAAA] [-] EMBL CF296023 [ AGAGCATGGAGGAAAACCCCAACTCCTGCGCCATCTGCTGAACTCGATCGATGCCGCCATGGCTAGAGGTAGTAGCCGAGTACGTACACAGCATGTGTAGTACTGTATACGTCTACGTGTACGCACGAGTTACGACGCAAATCACTATGCATGAATGCAAGCATGCTAGCTACTACATGTCCAGTTACATGGTTAAAAGTTGTTATATCTTACTACCGAGGTAGTAACTAGTTCTAATGCTGTAATTTTGGTGATAAGGAAGATATGTATGCACCATATGTCTGTATATACTAaaaaaaa ] consensusID : consensus_10358#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence [TGTTGAACTCGATCAATCCCCCCATGGTTAAAGGTAGTACCCGAGTACGTACCCAGCATGTGTAGTACTGTATACGTTTACGGGTACGCCCGAGTTTCGACCCAAATCCCTATGCATGAATGCAAGCATGCTAGTTATTACATGTCCAGTTACATGGTTAAAAGTTGTTATATTTTACTCCCGAGGTAGTAACTAGTTTTAATGCGGTAATTTTGGTGATAAGGAGAAATATGTATGCCCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF312689 [TGTTGAACTCGATCAATCCCCCCATGGTTAAAGGTAGTACCCGAGTACGTACCCAGCATGTGTAGTACTGTATACGTTTACGGGTACGCCCGAGTTTCGACCCAAATCCCTATGCATGAATGCAAGCATGCTAGTTATTACATGTCCAGTTACATGGTTAAAAGTTGTTATATTTTACTCCCGAGGTAGTAACTAGTTTTAATGCGGTAATTTTGGTGATAAGGAGAAATATGTATGCCCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10358#0 TGACTGGACTGAAGGAGTAGAAAGCGTTTCATCTGCTAGCTCTCCCTGCCATTCCAGTCA 60 consensus_10358#1 ------------------------------------------------------------ consensus_10358#0 TTGGCATTGTTGTTTCCTGTCCACTGACTCGCAGTTCATCCCGGATTCTTCTCCTCTTTC 120 consensus_10358#1 ------------------------------------------------------------ consensus_10358#0 TTCGCCGCCGGCTAGCCGGTGTTCGCGCTCCGGCGGCATCAGACATGTCGAAGAAAATCG 180 consensus_10358#1 ------------------------------------------------------------ consensus_10358#0 TGGTGAAGCTGAACGTGCACGACAAGGCGGAGAAGCAGAAGGCCATGAAGGCCGTCTCGG 240 consensus_10358#1 ------------------------------------------------------------ consensus_10358#0 CGCTCATCGGCATCGACGAGCTGTCCATGGACATGGCGAGCCAGAAGATGACGGTGATCG 300 consensus_10358#1 ------------------------------------------------------------ consensus_10358#0 GGATGGTGGACCCGGTGAACGTGGTGAGCAAGCTGCGCAAGTCGTGGGCGGCGACCATCG 360 consensus_10358#1 ------------------------------------------------------------ consensus_10358#0 AGTCCGTCGGGCCGGCGAAGGAGCCGGAGAAGAAGGAGGAGAAGAAGGACGGCGGCGGCG 420 consensus_10358#1 ------------------------------------------------------------ consensus_10358#0 ACGGCAAGAAGGACGGCGGCGGCGACGGCAAGAAGGAAGGCGAGGCCGGGGACAAGAAGG 480 consensus_10358#1 ------------------------------------------------------------ consensus_10358#0 ACGGCGATGCGGCCAAGAAGGACGGCGACAAGGACGGCGAGGCCAAGAAGGAGGACGGCG 540 consensus_10358#1 ------------------------------------------------------------ consensus_10358#0 ACAAGAAGCCGGCGGCGCCGACGGAGCAGCAGCTCTTCGCCGAGCTCATGAACCAGTACT 600 consensus_10358#1 ------------------------------------------------------------ consensus_10358#0 ACCACCGGCCGGCGGCGTACGGCTACAACCCTTACATGTCCGTGCCACCACACTACGTCG 660 consensus_10358#1 ------------------------------------------------------------ consensus_10358#0 TGCAGAGCATGGAGGAAAACCCCAACTCCTGCGCCATCTGCTGAACTCGATCGATGCCGC 720 consensus_10358#1 --------------------------------------TGTTGAACTCGATCAATCCCCC 22 ** *********** ** ** * consensus_10358#0 CATGGCTAGAGGTAGTAGCCGAGTACGTACACAGCATGTGTAGTACTGTATACGTCTACG 780 consensus_10358#1 CATGGTTAAAGGTAGTACCCGAGTACGTACCCAGCATGTGTAGTACTGTATACGTTTACG 82 ***** ** ******** ************ ************************ **** consensus_10358#0 TGTACGCACGAGTTACGACGCAAATCACTATGCATGAATGCAAGCATGCTAGCTACTACA 840 consensus_10358#1 GGTACGCCCGAGTTTCGACCCAAATCCCTATGCATGAATGCAAGCATGCTAGTTATTACA 142 ****** ****** **** ****** ************************* ** **** consensus_10358#0 TGTCCAGTTACATGGTTAAAAGTTGTTATATCTTACTACCGAGGTAGTAACTAGTTCTAA 900 consensus_10358#1 TGTCCAGTTACATGGTTAAAAGTTGTTATATTTTACTCCCGAGGTAGTAACTAGTTTTAA 202 ******************************* ***** ****************** *** consensus_10358#0 TGCTGTAATTTTGGTGATAAGGA-AGATATGTATGCACCATATGTCTGTATATACTACTC 959 consensus_10358#1 TGCGGTAATTTTGGTGATAAGGAGAAATATGTATGCCCCCTAAAAAAAAAAAAAAAA--- 259 *** ******************* * ********** ** ** * * * * consensus_10358#0 TCCGTATAGTACGTGTCAACAGGCAGGAAATCTTGATAGTTTGGAACTTTGTCATCCAAG 1019 consensus_10358#1 ---AAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------ 286 * * * ** * * *** consensus_10358#0 AAAATCATAATGTAATCATCTATAGCTGCAGTTTTGTTTTTAAAAAAAAAAA 1071 consensus_10358#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||