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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10359#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1282 fasta sequence
[TCTCTTTTTTTATTCACAAATTAAGAGCTATTATTGAAAATGCCA-TGAACAATCTTGTTATGTGCACGTTCTTTTGTAAGATGGAAACCCAACTTCACAGCACCACCGCTCCCATACCCATTGGGCCTTAATTCGACCTCCCCTTCATTTTTTTATCAGTAAATTTATCATGAATGCTTATAAATAGAGCTATAGAAGAGAGGTCAAGAACTCCAGGAGGAGAAATGAAAGAATAGCAGCTACACACGCACAATGAAGACTTGCGATTCAAGAAGCTCCTCCATCACCAGTGATCGTCTTT-GATCACAGTTGCTATCACAAATCTGGGAGTTGCTCTCTGTCTTCACAATCCTCTTTGTTATTTACAAATCCGAGCTGGGCCTCTGTGTTAAGGCTCTGAGTATTATTTACAAGCTCGGAACGGGGGTTAACATTTGGGTTCTTATTTACAGCACCACCACTATCTTCTACTAAACATTGACCAAAACCATTATCATCAGTGCTAATTGGGCCTTCAGACATGCAGTCCAAAGAGCTAGAACTGCTTCTGCAGGAGAGTCTACCGTCCTCTGAAAATCCGGACTTTTGACGCTGAAGCAATCCATATTTGTTACTATCAGGTGTGCTCACCCTTGACTGTTGAAACCTGGATGTATGAAGAGATTCAAATACTGGTATAAGATTCTTTGACCTAGATTCAATATTGCGAGTCTGGAGCTTTTCTATTTCAAGTTCACCTGAAATTATACCAGTATTGTCTGCTTCTAGAGCTCCATCCCCCATTACTTGAAAATGCATCCCAGATCTTGACCAGAGTGGTGTTGGAACAACATGAGTCTGCAATTCACTCTCAGAAATATAAAAATTATGATTCTCATCACCTAGCTTCTGCTTTTCAACAGCAGTGCCATTGGATGGATAAACACTAGTTCCTTTCTTTGCCACTTTCTGAAAAAGTTTACTGTTTTCTCCGATGTCAAAATCACTATATACAAAACTCTCAGCAGCGTCTCTTCGATTTCTTTTATGACAAACATCCCACTTTTGAAGAGCCTCAATAATAAACCTAGTGTCAGTTTCTCTTTGTGATCCATAAGGAATGGCACTCGAGGGAAAATCAATTCCAGGATCCTGCTCTGCAGAGCGATGGAGAACATACTGAATGATGCTTCCAGATGGAGAAAATACTAGTAAATGATACTTCATGCAAGGCGAACTTCCATCTGAGTTTTTGACGGCACCCTTGCAATTGTGAAATGTTGAAGCAATAGCACCAGAAATT]
[+] EMBL CB680804 [TCTCTTTTTTTATTCACAAATTAAGAGCTATTATTGAAAATGCCA TGAACAATCTTGTTATGTGCACGTTCTTTTGTAAGATGGAAACCCAACTTCACAGCACCACCGCTCCCATACCCATTGGGCCTTAATTCGACCTCCCCTTCATTTTTTTATCAGTAAATTTATCATGAATGCTTATAAATAGAGCTATAGAAGAGAGGTCAAGAACTCCAGGAGGAGAAATGAAAGAATAGCAGCTACACACGCACAATGAAGACTTGCGATTCAAGAAGCTCCTCCATCACCAGTGATCGTCTTT GATCACAGTTGCTATCACAAATCTGGGAGTTGCTCTCTGTCTTCACAATCCTCTTTGTTATTTACAAATCCGAGCTGGGCCTCTGTGTTAAGGCTCTGAGTATTATTTACAAGCTCGGAACGGGGGTTAACATTTGGGTTCTTATTTACAGCACCACCACTATCTTCTACTAAACATTGACCAAAACCATTATCATCAGTGCTAATTGGGCCTTCAGACATGCAGTCCAAAGAGCTAGAACTGCTTCTGCAGGAGAGTCTACCGTCCTCTGAAAATCCGGACTTTTGACGCTGAAGCAATCCATATTTGTTACTATCAGGTGTGCTCACCCTTGACTGTTGAAACCTGGATGTATGAAGAGATTCAAATACTGGTATAAGATTCTTTGACCTAGATTCAATATTGCGAGTCTGGAGCTTTTCTATTTCAAGTTCACCTGAAATTATACCAGTATTGTCTGCTTCTAGAGCTCCATCCCCCATTACTTGAAAATGCATCCCAGATCTTGACCAGAGTGGTGTTGGAAACACATGAGTCTGC ]
[-] EMBL AU032740 [ ttTTTTTTTATTCACAAATTAAGAGCTATTATTGAAAATGCAA TGGACAATCTTGTTATGTGCACGTTCTTTTGTAAGATGGAAACCCAACTTCACAGCACCACCGCTCCCATACCCATTGGGCCTTAATTCGACCTCCCCTTCATTTTTTTATCAGTAAATTTATCATGAATGCTTATAAATAGAGCTATAGAAGAGAGGTCAAGAACTCCAGGAGGAGAAATGAAAGAATAGCAGCTACACACGCACAATGAAGACTTGCGATTCAAGAAGCTCCTCCATCACCAGTGATCGTCTTTGGATCACAGTTGCTATCAC AATCTGGGGGTNGCTCTCTG ]
[+] EMBL CB659924 [ TTCACAAATTAAGAGCTATTATTGAAAATGCAC TGAACAATCTTGTTATGTGCACGTTCTTTTGTAAGATGGAAACCCAACTTCACAGCACCACCGCTCCCATACCCATTGGGCCTTAATTCGACCTCCCCTTCATTTTTTTATCAGTAAATTTATCATGAATGCTTATAAATAGAGCTATAGAAGAGAGGTCAAGAACTCCAGGAGGAGAAATGAAAGAATAGCAGCTACACACGCACAATGAAGACTTGCGATTCAAGAAGCTCCTCCATCACCAGTGATCGTCTTT GATCACAGTTGCTATCACAAATCTGGGAGTTGCTCTCTGTCTTCACAATCCTCTTTGTTATTTACAAATCCGAGCTGGGCCTCTGTGTTAAGGCTCTGAGTATTATTTACAAGCTCGGAACGGGGGTTAACATTTGGGTTCTTATTTACAGCACCACCACTATCTTCTACTAAACATTGACCAAAACCATTATCATCAGTGCTAATTGGGCCTTCAGACATGCAGTCCAAAGAGCTAGAACTGCTTCTGCAGGAGAGTCTACCGTCCTCTGAAAATCCGGACTTTTGACGCTGAAGCAATCCATATTTGTTACTATCAGGTGTGCTCACCCTTGACTGTTGAAACCTGGATGTATGAAGAGATTCAAATACTGGTATAAGATTCTTTGACCTAGATTCAATATTGCGAGTCTGGAGCTTTTCTATTTCAAGTTCACCTGAAATTATACCAGTATTGTCTGCTTCTAGAGCTCCATCCCCCATTACTTGAAAATGCATCCCAGATCTTGACCAGAGTGGTGTTGGAACAACATGAGTCT ]
[+] EMBL CB642587 [ CTATTATTGAAAAT CCATTGAACAATCTTGTTATGTGCACGTTCTTTTGTAAGATGGAAACCCAACTTCACAGCACCACCGCTCCCATACCCATTGGGCCTTAATTCCACCTCCCCTTCATTTTTTTATCAGGAAATTTATCATGAATGCTTATAAATAGAGCTATAAAAGAGAGGTCAAGAACTCCAGGAGGAGAAATGAAAGAATAGCAGCTACACACGCACAATGAAGACTTGCGATTCAAGAAGCTCCTCCATCACCAGTGATCGTCTTT GATCACAGTTGCTATCACAAATCTGGGAGTTGCTCTCTGTCTTCACAATCCTCTTTGTTATTTACAAATCCGAGCTGGGCCTCTGTGTTAAGGCTCTGAGTATTATTTACAAGCTCGGAACGGGGGTTAACATTTGGGTTCTTATTTACAGCACCACCACTATCTTCTACTAAACATTGACCAAAACCATTATCATCAGTGCTAATTGGGCCTTCAGACATGCAGTCCAAAGAGCTAGAACTGCTTCTGCAGGAGAGTCTACCGTCCTCTGAAAATCCGGACTTTTGACGCTGAAGCAATCCATATTTGTTACTATCAGGTGTGCTCACCCTTGACTGTTGAAACCTGGATGTATGAAGAGATTCAAATACTGGTATAAGATTCTTTGACCTAGATTCAATATTGCGAGTCTGGAGCTTTTCTATTTCAAGTTCACCTGAAATTATACCAGTATTGTCTGCTTCTAGAGCTCCATCC ]
[-] EMBL AU032739 [ TATTATTTACAAGCTCGGAACGGGGGTTAACATTTGGGNTCTTATTTACAGCACCACCACTATCTTCTACTAAACATTGACCAAAACCATTATCATCAGTGCTAATTGGGCCTTCAGACATGCAGTCCAAAGAGCTAGAACTGCTTCTGCAGGAGAGTCTACCGTCCTCTGAAAATCCGGACTTTTGACGCTGAAGCAATCCATATTTGTTACTATCAGGTGTGCTCACCCTTGACTGTTGAAACCTGGATGTATGAANAGANTCAAATACTGGTATAAGATTCTTTGACCTAGANTCAATATTGCGAGTCTGGAGCTTTTCTATTTCAAGTTCACCTGAAATTATACCAGTATTGTCTG ]
[-] EMBL CB659923 [ AAGAGATTCAAATACTGGTATAAGATTCTATGACCTAGATTCAATATTGCGAGTCTGGAGCTTTTCTATTTCAAGTTCACCTGAAATTATACCAGTATTGTCTGCTTCTAGAGCTCCATCCCCCATTACTTGAAAATGCATCCCAGATCTTGACCAGAGTGGTGTTGGAACAACATGAGTCTGCAATTCACTCTCAGAAATATAAAAATTATGATTCTCATCACCTAGCTTCTGCTTTTCAACAGCAGTGCCATTGGATGGATAAACACTAGTTCCTTTCTTTGCCACTTTCTGAAAAAGTTTACTGTTTTCTCCGATGTCAAAATCACTATATACAAAACTCTCAGCAGCGTCTCTTCGATTTCTTTTATGACAAACATCCCACTTTTGAAGAGCCTCAATAATAAACCTAGTGTCAGTTTCTCTTTGTGATCCATAAGGAATGGCACTCGAGGGAAAATCAATTCCAGGATCCTGCTCTGCAGAGCGATGGAGAACATACTGAATGATGCTTCCAGATGGAGAAAATACTAGTAAATGATACTTCATGCAAGGCGAACTTCCATCTGAGTTTTTGACGGCACCCTTGCAATTGTGAAATGTTGAAGCAATAGCACCAGAAATT]
consensusID : consensus_10359#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[TTTTTTTTTGTTACCTTTGATCACAGTTGCTATCACAAATCTGGGAGTTGCTCTCTGTCTTCACAATCCTCTTTGTTATTTACAAATCCGAGCTGGGCCTCTGTGTTAAGGCTCTGAGTATTATTTACAAGCTCGGAACGGGGGTTAACATTTGGGTTCTTATTTGCAGCACCACCACTATCTTCTACTAAACATTGACCAAAACCATTATCATCAGTGCTAATTGGGCCTTCAGACATGCAGTCCAAAGAGCTAGAACTGCTTCTGCAGGAGAGTCTACCGTCCTCTGAAAATCCGGACTTTTGACGCTNAAGCAATCCATATTTGTTACTATCAGGTGTGCTCACCCTTGACTGTTGAAACCTGGATGTATGAAGAGATTCAAATACTGGTATAAGATTCTTTGACCTAGATTCAATATTGCGAGTCTGGAGCTTTTCTATTTCAAGTTCACCTGAAATTATACCAGTATTGTCTGCTTCTAGAGCTCCATCCCCCATTACTTGAAAATGCATCCCAGATCTTGACCAGAGTGGTGTTGGAACAACATGAGTCTGCAATTCACTCTCAGAAATATAAAAATTATGATTCTCATCACCTAGCTTCTGCTTTTCAACAGCAGTGCCATTGGATGGATAAACACTAGTTCCTTTCTTTGCCACTTTCTGAAAAAGTTTACTGTTTTCTCCGAT]
[+] EMBL CA759795 [TTTTTTTTTGTTACCTTTGATCACAGTTGCTATCACAAATCTGGGAGTTGCTCTCTGTCTTCACAATCCTCTTTGTTATTTACAAATCCGAGCTGGGCCTCTGTGTTAAGGCTCTGAGTATTATTTACAAGCTCGGAACGGGGGTTAACATTTGGGTTCTTATTTGCAGCACCACCACTATCTTCTACTAAACATTGACCAAAACCATTATCATCAGTGCTAATTGGGCCTTCAGACATGCAGTCCAAAGAGCTAGAACTGCTTCTGCAGGAGAGTCTACCGTCCTCTGAAAATCCGGACTTTTGACGCTNAAGCAATCCATATTTGTTACTATCAGGTGTGCTCACCCTTGACTGTTGAAACCTGGATGTATGAAGAGATTCAAATACTGGTATAAGATTCTTTGACCTAGATTCAATATTGCGAGTCTGGAGCTTTTCTATTTCAAGTTCACCTGAAATTATACCAGTATTGTCTGCTTCTAGAGCTCCATCCCCCATTACTTGAAAATGCATCCCAGATCTTGACCAGAGTGGTGTTGGAACAACATGAGTCTGCAATTCACTCTCAGAAATATAAAAATTATGATTCTCATCACCTAGCTTCTGCTTTTCAACAGCAGTGCCATTGGATGGATAAACACTAGTTCCTTTCTTTGCCACTTTCTGAAAAAGTTTACTGTTTTCTCCGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10359#0 TCTCTTTTTTTATTCACAAATTAAGAGCTATTATTGAAAATGCCATGAACAATCTTGTTA 60
consensus_10359#1 ------------------------------------------------------------
consensus_10359#0 TGTGCACGTTCTTTTGTAAGATGGAAACCCAACTTCACAGCACCACCGCTCCCATACCCA 120
consensus_10359#1 ------------------------------------------------------------
consensus_10359#0 TTGGGCCTTAATTCGACCTCCCCTTCATTTTTTTATCAGTAAATTTATCATGAATGCTTA 180
consensus_10359#1 ------------------------------------------------------------
consensus_10359#0 TAAATAGAGCTATAGAAGAGAGGTCAAGAACTCCAGGAGGAGAAATGAAAGAATAGCAGC 240
consensus_10359#1 ------------------------------------------------------------
consensus_10359#0 TACACACGCACAATGAAGACTTGCGATTCAAGAAGCTCCTCCATCACCAGTGATCGTCTT 300
consensus_10359#1 -------------------------------------------TTTTTTTTTGTTACCTT 17
* * * ***
consensus_10359#0 TGATCACAGTTGCTATCACAAATCTGGGAGTTGCTCTCTGTCTTCACAATCCTCTTTGTT 360
consensus_10359#1 TGATCACAGTTGCTATCACAAATCTGGGAGTTGCTCTCTGTCTTCACAATCCTCTTTGTT 77
************************************************************
consensus_10359#0 ATTTACAAATCCGAGCTGGGCCTCTGTGTTAAGGCTCTGAGTATTATTTACAAGCTCGGA 420
consensus_10359#1 ATTTACAAATCCGAGCTGGGCCTCTGTGTTAAGGCTCTGAGTATTATTTACAAGCTCGGA 137
************************************************************
consensus_10359#0 ACGGGGGTTAACATTTGGGTTCTTATTTACAGCACCACCACTATCTTCTACTAAACATTG 480
consensus_10359#1 ACGGGGGTTAACATTTGGGTTCTTATTTGCAGCACCACCACTATCTTCTACTAAACATTG 197
**************************** *******************************
consensus_10359#0 ACCAAAACCATTATCATCAGTGCTAATTGGGCCTTCAGACATGCAGTCCAAAGAGCTAGA 540
consensus_10359#1 ACCAAAACCATTATCATCAGTGCTAATTGGGCCTTCAGACATGCAGTCCAAAGAGCTAGA 257
************************************************************
consensus_10359#0 ACTGCTTCTGCAGGAGAGTCTACCGTCCTCTGAAAATCCGGACTTTTGACGCTGAAGCAA 600
consensus_10359#1 ACTGCTTCTGCAGGAGAGTCTACCGTCCTCTGAAAATCCGGACTTTTGACGCTNAAGCAA 317
***************************************************** ******
consensus_10359#0 TCCATATTTGTTACTATCAGGTGTGCTCACCCTTGACTGTTGAAACCTGGATGTATGAAG 660
consensus_10359#1 TCCATATTTGTTACTATCAGGTGTGCTCACCCTTGACTGTTGAAACCTGGATGTATGAAG 377
************************************************************
consensus_10359#0 AGATTCAAATACTGGTATAAGATTCTTTGACCTAGATTCAATATTGCGAGTCTGGAGCTT 720
consensus_10359#1 AGATTCAAATACTGGTATAAGATTCTTTGACCTAGATTCAATATTGCGAGTCTGGAGCTT 437
************************************************************
consensus_10359#0 TTCTATTTCAAGTTCACCTGAAATTATACCAGTATTGTCTGCTTCTAGAGCTCCATCCCC 780
consensus_10359#1 TTCTATTTCAAGTTCACCTGAAATTATACCAGTATTGTCTGCTTCTAGAGCTCCATCCCC 497
************************************************************
consensus_10359#0 CATTACTTGAAAATGCATCCCAGATCTTGACCAGAGTGGTGTTGGAACAACATGAGTCTG 840
consensus_10359#1 CATTACTTGAAAATGCATCCCAGATCTTGACCAGAGTGGTGTTGGAACAACATGAGTCTG 557
************************************************************
consensus_10359#0 CAATTCACTCTCAGAAATATAAAAATTATGATTCTCATCACCTAGCTTCTGCTTTTCAAC 900
consensus_10359#1 CAATTCACTCTCAGAAATATAAAAATTATGATTCTCATCACCTAGCTTCTGCTTTTCAAC 617
************************************************************
consensus_10359#0 AGCAGTGCCATTGGATGGATAAACACTAGTTCCTTTCTTTGCCACTTTCTGAAAAAGTTT 960
consensus_10359#1 AGCAGTGCCATTGGATGGATAAACACTAGTTCCTTTCTTTGCCACTTTCTGAAAAAGTTT 677
************************************************************
consensus_10359#0 ACTGTTTTCTCCGATGTCAAAATCACTATATACAAAACTCTCAGCAGCGTCTCTTCGATT 1020
consensus_10359#1 ACTGTTTTCTCCGAT--------------------------------------------- 692
***************
consensus_10359#0 TCTTTTATGACAAACATCCCACTTTTGAAGAGCCTCAATAATAAACCTAGTGTCAGTTTC 1080
consensus_10359#1 ------------------------------------------------------------
consensus_10359#0 TCTTTGTGATCCATAAGGAATGGCACTCGAGGGAAAATCAATTCCAGGATCCTGCTCTGC 1140
consensus_10359#1 ------------------------------------------------------------
consensus_10359#0 AGAGCGATGGAGAACATACTGAATGATGCTTCCAGATGGAGAAAATACTAGTAAATGATA 1200
consensus_10359#1 ------------------------------------------------------------
consensus_10359#0 CTTCATGCAAGGCGAACTTCCATCTGAGTTTTTGACGGCACCCTTGCAATTGTGAAATGT 1260
consensus_10359#1 ------------------------------------------------------------
consensus_10359#0 TGAAGCAATAGCACCAGAAATT 1282
consensus_10359#1 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||