cluster # 10376

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Oryza sativa
cluster # 10376 cluster # 10376 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10376#0 length = 455 sequences # 6

consensus_10376#1 length = 222 sequences # 1

consensusID : consensus_10376#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 455
fasta sequence

                              [TGGTTAGCGAGCGCGTGCGGCGGCAGGCATTGAACCCTGTGATCGAGCGATCGAGCTAGCTAGACTTCCAGCACGAGCGGCGATGTCGACGACGGCGGCGACGACGCTGGGGCGCGAGCTCCTGGAGGCGGCGAGGGCGCCGGAGTTCGCGGGGTGGCTGCNCGGCCTGCGCCGCCGCATCCACCAGCACCC-GGAGCTCGCGTTCCAGGAGCACCGCACCAGCGCGCTCGTGCGCCGG-AAGC-T-GGACGCGCTCG-GCGTCGCGTACGTTTGGCCCGTCGCGCAGACCGGCGTCGTTGCCANCGTCGTTCNGCGCCGCCGGCCCCGGCNCCGTGTTCAGGCTCCGCGCCGANATGGACGGCGCTCCCCATCCAGGAAATGGTAAGAATNGGAAATTCAAGAGCTTTGGAAANATGGGAAAAGATGCCATGACGTGTANGGGCACGATGTTCATNGTC]

[+] EMBL OSS4577A             [TGGTTAGCGAGCGCGTGCGGCGGCAGGCATTGAACCCTGTAATCGAGCGATCGAGCTAGCTAGACTTCCAGCACGAGCGGCGATGTCGACGACGGCGGCGACGACGCTGGGGNGCGA NTCCTGGAGGCGGCGAGGGCGCCGGANTTCGCGGGGTGGCTGCNCGGCCTGCNNCGGCGCATCNACCAGCACCC GGAGCTCGCGTTCC                                                                                                                                                                                                                                                             ]
[+] EMBL OSS4113A             [       CGAGCGCGTGCGGCGGCAGGCATTGAACCCTGTGATCGAGCGATCGAGCTAGCTAGACTTCCAGCACGAGCGGCGATGTCGACGACGTCGGCGACGACGCTGGGGCGCGAGCTCCTGGAGGCGGCGAGGGCGTCGGAGTTCGCGTGGTGGCTGCGCGGCCTGCGCCGNCGCATCCACCAGCACCCTGGAGCTCGNGTTCCAGGAGCACCGNACCAGCGCGCTCGTGCGGCGG AAGC T GG                                                                                                                                                                                                                   ]
[+] EMBL AU076300             [                  GGCGGCAGGCATTGAACCCTGTGATCGAGCGATCGAGCTAGCTAGACTTCCAGCACGAGCGGCGATGTCGACGACGGCGGCGACGACGCTGGGGCGCGAGCTCCTGGAGGCGGCGAGGGCGCCGGAGTTCGNGGGGTGGCTGCGCGGCCTGCGCCGCCGCATCCACCAGCACCC GGAGCTCGCGTTCCAGGAGNACCGCACCAGCGCGCTCGTGCGCCGG AAGC T GGACGCGCTCGAGCGTCGCGTACGTGTGGCCCGTCGCGCAGACCGGCGTCGTTGCCANCGTCGTTCNGCGCCGCCGGCCCCGGCNCCGTGTTCAGGCTCCGCGCCGANATGGACGGCGCTCCCCATCCAGGAAATGGTAAGAATNGGAAATTCAAGAGCTTTGGAAANATGGGAAAAGATGCCATGACGTGTANGGGCACGATGTTCATNGTC]
[+] EMBL AU066068             [                  GGCGGCAGGCATTGAACCCTGTNATCGAGCGATCGAGCTAGCTAGACTTCCAGCACGAGCGGCGATGTCGACGACGGCGGCGACGACGCTGGGGCGCGAGCTCCTGGAGGCGGCGAGGGCGCCGGAGTTCGCGGGGTGGCTGCNCGGCCTGCGCCGACGCATCCACCAGCACCC GGAGCTCGCGTTCCAGGAGCACCGCACCAGCGCGCTCGTGCGCGGGNAAGC TNNGACGCGCTCG GCGTCGCGTACGTTTGGCCCGTCGCGCAGACCGGCGTCGTTGCCAcc                                                                                                                                                          ]
[+] EMBL OSS1880A             [                        AGGCATTGAACCCTGTGATCGAGCGATCGAGCTAGCTAGACTTCCAGCACGAGCGGCGATGTCGACGACGGCGGCGACGACGCTGGGGCGCGAGCTCCTGGAGGCGGCGAGGGCGCCGGAGTTCGCGGGGTGGCTGCGCGGCCTGCGCCG CGCATCCACCAGCACCC GGAGCTCGCGTTCCAGGAGCACCGCACCAGCGCGCTCGTGC CGGN NAGCTT GGACGCGCTCG GCGTCGCGTACGTTTGGCCCGTCGCGCAGACCGGCGTCGTTGCCANCGTCG TCGGCGCCG CGGCCCCGGCCCCGTGTTCGGGCTTCGCGCCGACATGGAC GCGCTTCCCATTCAGGAAATTGT AGAATGGGA                                                                 ]
[+] EMBL OSS2391A             [                        AGGCATTGAACCCTGTGATCGAGCGATCGAGCTAGCTAGACTTCCAGCACGAGNGGCGATGTCGACGACGGCGGCGACGACGCTGGGGNGCGA CTCCTGGAGGCGGCGAGGGCGCCGGAGTTCGCGNGGTGGCTGCNCGGCCTGCGCCGCCGCATCCACCAGNACCC GGAGCTCGCGTTCCAGGAG                                                                                                                                                                                                                                                        ]




>consensus_10376#0
TGGTTAGCGAGCGCGTGCGGCGGCAGGCATTGAACCCTGTGATCGAGCGATCGAGCTAGC
TAGACTTCCAGCACGAGCGGCGATGTCGACGACGGCGGCGACGACGCTGGGGCGCGAGCT
CCTGGAGGCGGCGAGGGCGCCGGAGTTCGCGGGGTGGCTGCNCGGCCTGCGCCGCCGCAT
CCACCAGCACCCGGAGCTCGCGTTCCAGGAGCACCGCACCAGCGCGCTCGTGCGCCGGAA
GCTGGACGCGCTCGGCGTCGCGTACGTTTGGCCCGTCGCGCAGACCGGCGTCGTTGCCAN
CGTCGTTCNGCGCCGCCGGCCCCGGCNCCGTGTTCAGGCTCCGCGCCGANATGGACGGCG
CTCCCCATCCAGGAAATGGTAAGAATNGGAAATTCAAGAGCTTTGGAAANATGGGAAAAG
ATGCCATGACGTGTANGGGCACGATGTTCATNGTC

consensusID : consensus_10376#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 222
fasta sequence

                              [TGCGGCGGCAGGCATTGAACCCTGTGATCGAGCGATCGAGCTAGCTAGACTTCCAGCACGTCGGCGCCCGCNGCCCCGGCCCCGTGTTCGGGGCTTCCGCGGCCGACAATGGACGNGCTTCCCAATCCAGGAAATGGTAGAATGGGAATTCAAGAGCTTTGGAAGATGGAAAGATGCATGCGTTTTGGGCACGATTGTTCATGTCGCAATTCTTCTGGGGGA]

[+] EMBL OSS1509A             [TGCGGCGGCAGGCATTGAACCCTGTGATCGAGCGATCGAGCTAGCTAGACTTCCAGCACGTCGGCGCCCGCNGCCCCGGCCCCGTGTTCGGGGCTTCCGCGGCCGACAATGGACGNGCTTCCCAATCCAGGAAATGGTAGAATGGGAATTCAAGAGCTTTGGAAGATGGAAAGATGCATGCGTTTTGGGCACGATTGTTCATGTCGCAATTCTTCTGGGGGA]




>consensus_10376#1
TGCGGCGGCAGGCATTGAACCCTGTGATCGAGCGATCGAGCTAGCTAGACTTCCAGCACG
TCGGCGCCCGCNGCCCCGGCCCCGTGTTCGGGGCTTCCGCGGCCGACAATGGACGNGCTT
CCCAATCCAGGAAATGGTAGAATGGGAATTCAAGAGCTTTGGAAGATGGAAAGATGCATG
CGTTTTGGGCACGATTGTTCATGTCGCAATTCTTCTGGGGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10376#0      TGGTTAGCGAGCGCGTGCGGCGGCAGGCATTGAACCCTGTGATCGAGCGATCGAGCTAGC 60
consensus_10376#1      ---------------TGCGGCGGCAGGCATTGAACCCTGTGATCGAGCGATCGAGCTAGC 45
                                      *********************************************

consensus_10376#0      TAGACTTCCAGCACGAGCGGCGATGTCGACGACGGCGGCGACGACGCTGGGGCGCGAGCT 120
consensus_10376#1      TAGACTTCCAGCA----CGTCGGCGCCCGCNGCCCCGGCCCCGTGTTCGGGGCTTCCGCG 101
                       *************    ** **  * *  *  *  ****  **     *****    ** 

consensus_10376#0      CCTGGAGGCGGCGAGGGCGCCGGAGTTCGCGGGGTGGCTGCNCGGCCTGCGCCGCCGCAT 180
consensus_10376#1      GCCGACAATGG-ACGNGCTTCCCAATCCAGGAAATGGTAGAATGGGA-ATTCAAGAGCTT 159
                        * *     **   * **  *  * * *  *   ***  *   **      *    ** *

consensus_10376#0      CCACCAGCACCCGGA-GCTCGCGTTCCAGGAGCACCGCACCAGCGCGCTCGTGCGCCGGA 239
consensus_10376#1      TGGAAGATGGAAAGATGCATGCGTTTTGGGCACGATTGTTCATGTCGCAATTCTTCTGGG 219
                                    ** **  *****   **  *       **   ***   *   * ** 

consensus_10376#0      AGCTGGACGCGCTCGGCGTCGCGTACGTTTGGCCCGTCGCGCAGACCGGCGTCGTTGCCA 299
consensus_10376#1      GGA--------------------------------------------------------- 222
                        *                                                          

consensus_10376#0      NCGTCGTTCNGCGCCGCCGGCCCCGGCNCCGTGTTCAGGCTCCGCGCCGANATGGACGGC 359
consensus_10376#1      ------------------------------------------------------------
                                                                                   

consensus_10376#0      GCTCCCCATCCAGGAAATGGTAAGAATNGGAAATTCAAGAGCTTTGGAAANATGGGAAAA 419
consensus_10376#1      ------------------------------------------------------------
                                                                                   

consensus_10376#0      GATGCCATGACGTGTANGGGCACGATGTTCATNGTC 455
consensus_10376#1      ------------------------------------