cluster # 1039

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Oryza sativa
cluster # 1039 cluster # 1039 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1039#0 length = 417 sequences # 1

consensus_1039#1 length = 366 sequences # 1

consensusID : consensus_1039#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 417
fasta sequence

                              [TTTTTTTTGAAGCACTTGACAATCACTTAAGCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATTTTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTTTCTTTTTTACCCATGCATCCAGATCCTTTCTTGCAGGAAACAATTTCTCTATTCACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTGTCTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAGGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGC]

[+] EMBL CF294995             [TTTTTTTTGAAGCACTTGACAATCACTTAAGCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATTTTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTTTCTTTTTTACCCATGCATCCAGATCCTTTCTTGCAGGAAACAATTTCTCTATTCACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTGTCTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAGGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGC]




>consensus_1039#0
TTTTTTTTGAAGCACTTGACAATCACTTAAGCGTAGTTTATCCACCATAATTAAGATCGA
GACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATTTTTTATCCCCCTGTAGTACT
GTACATCAGAAATTCACCACTCAACTTTCTTTTTTACCCATGCATCCAGATCCTTTCTTG
CAGGAAACAATTTCTCTATTCACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTGT
CTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAGGAA
GAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATC
AAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGC

consensusID : consensus_1039#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence

                              [TAAGATCGAGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTTGTTCTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCTTTTTTTTCCATGCATGCAGGAAATTATTACCACAACACACACAGTTTTTTTGAATCTCATCACATCCATCTCTCTCTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCG]

[+] EMBL CF293922             [TAAGATCGAGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTTGTTCTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCTTTTTTTTCCATGCATGCAGGAAATTATTACCACAACACACACAGTTTTTTTGAATCTCATCACATCCATCTCTCTCTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCG]




>consensus_1039#1
TAAGATCGAGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCC
TGTTGTTCTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCTTTTTTTT
CCATGCATGCAGGAAATTATTACCACAACACACACAGTTTTTTTGAATCTCATCACATCC
ATCTCTCTCTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAA
AAAAAGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTG
AACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTG
ACAGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1039#0      TTTTTTTTGAAGCACTTGACAATCACTTAAGCGTAGTTTATCCACCATAATTAAGATCGA 60
consensus_1039#1      ---------------------------------------------------TAAGATCGA 9
                                                                         *********

consensus_1039#0      GACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATTTTTTATCCCCCTGTAGTACT 120
consensus_1039#1      GACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTTGTTCT 69
                      ***************************************  ************* ** **

consensus_1039#0      GTACATCAGAAATTCACCACTCAACTTTCTTTTTTACCCATGCATCCAGATCCTTTCTTG 180
consensus_1039#1      GTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCTTTTTTTTCCATGCATG 129
                      **************************  *    * ******** *     *** * * **

consensus_1039#0      CAGGAAACAATTTCT-CTATTCACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTG 239
consensus_1039#1      CAGGAAATTATTACCACAACACACACAGTTTTTTTGAATCTCATCACATCCATCTCTCT- 188
                      *******  *** *  * *  ********   * ************************* 

consensus_1039#0      TCTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAGGA 299
consensus_1039#1      -CTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAAGA 247
                       ******************************************************** **

consensus_1039#0      AGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCAT 359
consensus_1039#1      AGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCAT 307
                      ************************************************************

consensus_1039#0      CAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGC- 417
consensus_1039#1      CAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCG 366
                      **********************************************************