These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1039#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence [TTTTTTTTGAAGCACTTGACAATCACTTAAGCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATTTTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTTTCTTTTTTACCCATGCATCCAGATCCTTTCTTGCAGGAAACAATTTCTCTATTCACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTGTCTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAGGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGC] [+] EMBL CF294995 [TTTTTTTTGAAGCACTTGACAATCACTTAAGCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATTTTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTTTCTTTTTTACCCATGCATCCAGATCCTTTCTTGCAGGAAACAATTTCTCTATTCACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTGTCTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAGGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGC] consensusID : consensus_1039#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [TAAGATCGAGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTTGTTCTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCTTTTTTTTCCATGCATGCAGGAAATTATTACCACAACACACACAGTTTTTTTGAATCTCATCACATCCATCTCTCTCTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCG] [+] EMBL CF293922 [TAAGATCGAGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTTGTTCTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCTTTTTTTTCCATGCATGCAGGAAATTATTACCACAACACACACAGTTTTTTTGAATCTCATCACATCCATCTCTCTCTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1039#0 TTTTTTTTGAAGCACTTGACAATCACTTAAGCGTAGTTTATCCACCATAATTAAGATCGA 60 consensus_1039#1 ---------------------------------------------------TAAGATCGA 9 ********* consensus_1039#0 GACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATTTTTTATCCCCCTGTAGTACT 120 consensus_1039#1 GACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTTGTTCT 69 *************************************** ************* ** ** consensus_1039#0 GTACATCAGAAATTCACCACTCAACTTTCTTTTTTACCCATGCATCCAGATCCTTTCTTG 180 consensus_1039#1 GTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCTTTTTTTTCCATGCATG 129 ************************** * * ******** * *** * * ** consensus_1039#0 CAGGAAACAATTTCT-CTATTCACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTG 239 consensus_1039#1 CAGGAAATTATTACCACAACACACACAGTTTTTTTGAATCTCATCACATCCATCTCTCT- 188 ******* *** * * * ******** * ************************* consensus_1039#0 TCTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAGGA 299 consensus_1039#1 -CTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAAGA 247 ******************************************************** ** consensus_1039#0 AGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCAT 359 consensus_1039#1 AGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCAT 307 ************************************************************ consensus_1039#0 CAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGC- 417 consensus_1039#1 CAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCG 366 ********************************************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||