cluster # 10397

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Oryza sativa
cluster # 10397 cluster # 10397 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10397#0 length = 635 sequences # 1

consensus_10397#1 length = 612 sequences # 5
consensus_10397#2 length = 603 sequences # 1

consensusID : consensus_10397#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 635
fasta sequence

                              [GGCGATAAATTCACAACTGTAGCATTTTAATTCCCGTGAGGAATATTGACAATGTAGCGGTAGAACAAGGATAAGGTCAAGACCTACTTTTACACGGAGTACACACAATAATTACAAAAATGAAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAGCCCAAAAAGATGCATCCGGCAAAATGCCGGCCATCAGAACGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAATTCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAACTCACCAGTTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAGTTCCTGTTCCTTCTGCTTTTGGATAGCTTCGATCTTTTTCATGTACTCGTCAGTAACTTTTTGTAGATCAGCGGACAAATCCTTCACGTTATCTTCAGAAAGTTTTTTTTCTGAGAGGGTGAACCTTCTCAAGCTTATCGTAAGCTTTGATGGCATCTCTTCTTATGTTCCTTATAGCAACCTTGCCTTCTTCAGCTAATTTAGCAACAGTTTTTGCCAATTCCTTTCTGCGGTCAGAAGTCAATGGTGGAACAGTGACTCGAATCACTTCTCCATCATTGCTTGGTGTA]

[+] EMBL CB632284             [GGCGATAAATTCACAACTGTAGCATTTTAATTCCCGTGAGGAATATTGACAATGTAGCGGTAGAACAAGGATAAGGTCAAGACCTACTTTTACACGGAGTACACACAATAATTACAAAAATGAAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAGCCCAAAAAGATGCATCCGGCAAAATGCCGGCCATCAGAACGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAATTCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAACTCACCAGTTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAGTTCCTGTTCCTTCTGCTTTTGGATAGCTTCGATCTTTTTCATGTACTCGTCAGTAACTTTTTGTAGATCAGCGGACAAATCCTTCACGTTATCTTCAGAAAGTTTTTTTTCTGAGAGGGTGAACCTTCTCAAGCTTATCGTAAGCTTTGATGGCATCTCTTCTTATGTTCCTTATAGCAACCTTGCCTTCTTCAGCTAATTTAGCAACAGTTTTTGCCAATTCCTTTCTGCGGTCAGAAGTCAATGGTGGAACAGTGACTCGAATCACTTCTCCATCATTGCTTGGTGTA]




>consensus_10397#0
GGCGATAAATTCACAACTGTAGCATTTTAATTCCCGTGAGGAATATTGACAATGTAGCGG
TAGAACAAGGATAAGGTCAAGACCTACTTTTACACGGAGTACACACAATAATTACAAAAA
TGAAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAGCCCAAAAAGATGCATC
CGGCAAAATGCCGGCCATCAGAACGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAAT
TCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAA
CTCACCAGTTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAGTTCCTGTTCCTTCTG
CTTTTGGATAGCTTCGATCTTTTTCATGTACTCGTCAGTAACTTTTTGTAGATCAGCGGA
CAAATCCTTCACGTTATCTTCAGAAAGTTTTTTTTCTGAGAGGGTGAACCTTCTCAAGCT
TATCGTAAGCTTTGATGGCATCTCTTCTTATGTTCCTTATAGCAACCTTGCCTTCTTCAG
CTAATTTAGCAACAGTTTTTGCCAATTCCTTTCTGCGGTCAGAAGTCAATGGTGGAACAG
TGACTCGAATCACTTCTCCATCATTGCTTGGTGTA

consensusID : consensus_10397#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 612
fasta sequence

                              [CACAACTGTAGCATTTTAATTCACGTGAG-G-AATATTGACAATGTAGCGGTAGAACAAGGATAAGG-TCAAGACCTACTTTTACACGGAGTA-CACACAATAATTACAAAAATG-AAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAG-CCCAAAAAGATGCATCCGGCAAAATGCCGGCCATCAGAACGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAATTCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAACTCACCAGTTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAGTTCCTGTTCCTTCTGCTTTTGGATAGCTTCGATCTTTTTCATGTACTCGTCAGTAACTTTTTGTAGATCAGCGGACAAATCCTTCACGTTATCTTCAGAAAGTTTTTTTTCCTTCTCAAGCTTATCGTAAGCTTTGATGGCATCTCTTCTTATGTTCCTTATAGCAACCTTGCCTTCTTCAGCTAATTTAGCAACAGTTTTTGCCAATTCCTTTCTGCGGTCAGAAGTCAATGGTGGAACAGTGACTCGAATCACTTCTCCATCATTGCTTGGTGTAA]

[-] EMBL AK065242             [CACAACTGTAGCATTTTAATTCACGTGAG G AATATTGACAATGTAGCGGTAGAACAAGGATAAGG TCAAGACCTACTTTTACACGGAGTA CACACAATAATTACAAAAATG AAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAG CCCAAAAAGATGCATCCGGCAAAATGCCGGCCATCAGAAAGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAATTCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAACTCACCAATTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAGTTCCTGTTCCTTCTGCTTTTGGATAGCTTCGATCTTTTTCATGTACTCGTCAGTAAC TTTTGTAGATCAGCGGACAAATCCTTCACGTTATCTTCAGAAAGTTTCTTTTCCTTCTCAAGCTTATCGTAAGCTATGATGGCATCTCTTCTTATGTTCCTTATAGCAACCTTGCCTTCTTCAGCTAATTTAGCAACAGTTTTTGCCAATTCCTTTCTGCGGTCAGAAGTCAATGGTGGAACAGTGACTCGAATCACTTCTCCATCATTGCTTGGTGTAA]
[-] EMBL CA766246             [ cCANCTGTAGCNTTTNANTNCNCGTGAG GAAATATTGNCAATGAAGCGGTAGAACAAGGAAAAGGNTCAAGACCTACTTTTACCCGGAGTACCCCCCAATANTTCCAAAAATGAAAAATGAAGGACCCGNCACCATTGTCTGAAATTGCACTCCAGCCCCAAAAAGATGCATCCGGCAAAATGCCGGCCATCAGAACGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAATTCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAACTCACCAGTTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAGTTCCTGTTCCTTCTGCTTTTGGATAGCTTCGATCTTTTTCATGTACTCGTCAGTAACTTTTTGTAGATCAGCGGACAAATCCTTCACGTTATCTTCAGAAAGTTTTTTTTCCTTCTCAAGCTTATCGTAAGCTTTGATGGCATCTCTTCTTATGTTCCTTATAGCAACCTTGCCTTCTTCAGCTAATTTAGCAACAGTTTTTGCCAATTCCTTTCTGCGGTCAGAAGTCAATGGTGGAACAGTGACTCGAATCACTTCTCCATCATTGCTTGGTGTAA]
[+] EMBL CB625676             [            ATTTTAATTCACGTGCGTG AATATTGACAATGTAGCGGTAGAACAAGGATAAGG TCAAGACCTACTTTTACACGGAGTA CACACAATAATTACAAAAATG AAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAG CCCAAAAAGATGCATCCGGCAAAATGCCGGCCATCAGAACGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAATTCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAACTCACCAGTTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAGTTCCTGTTCCTTCTGCTTTTGGATAGCTTCGATCTTTTTCATGTACTCGTCAGTAACTTTTTGTAGATCAGCGGACAAATCCTTCACGTTATCTTCAGAAAGTTTTTTTTCCTTCTCAAGCTTATCGTAAGCTTTGATGGCATCTCTTCTTATGTTCCTTATAGCAACCTTGCCTTCTTCAGCTAATTTAGCAACAGTTTTTGCCAATTCCTTTCTGCGGTCAGAAGTCAATGGTGGAACAGTGACTCGAATCACTTCTCCATCATTGCTTGGTGTA ]
[+] EMBL CB629014             [                      ACGTGAG G AATATTGACAATGCATTGGAAGAACAAGGATAAGG TCAAGACCTACTTTTACACGGAGTA CACACAATAATTACAAAAATG AAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAG CCCAAAAAGATGCATCCGGCAAAATGCCGGCCATCAGAACGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAATTCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAACTCACCAGTTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAGTTCCTGTTCCTTCTGCTTTTGGATAGCTTCGATCTTTTTCATGTACTCGTCAGTAACTTTTTGTAGATCAGCGGACAAATCCTTCACGTTATCTTCAGAAAGTTTTTTTTCCTTCTCAAGCTTATCGTAAGCTTTGATGGCATCTCTTCTTATGTTCCTTATAGCAACCTTGCCTTCTTCAGCTAATTTAGCAACAGTTTTTGCCAATTCCTTTCTGCGGTCAGAAGTCAATGGTGGAACAGTGACTCGAATCACTTCTCCATCATTGCTTGGTGTA ]
[+] EMBL CB680721             [                                                              TAAGG TCAAGACCTACTTTTACACGGAGTA CACACCATAATTACAAAAATG AAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAG CCCAAAAAGATGCATCCGGCAAAATGCCGGCCATCAGAAAGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAATTCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAACTCACCAATTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAGTTCCTGTTCCTTCTGCTTTTGGATAGCTTCGATCTTTTTCATGTACTCGTCAGTAACTTTTTGTAGATCAGCGGACAAATCCTTCACGTTATCTTCAGAAAGTTTCTTTTCCTTCTCAAGCTTATCGTAAGCTTTGATGGCATCTCTTCTTATGTTCCTTATAGCAACCTTGCCTTCTTCAGCTAATTTAACAACAGATTTTGCCAA                                                                       ]




>consensus_10397#1
CACAACTGTAGCATTTTAATTCACGTGAGGAATATTGACAATGTAGCGGTAGAACAAGGA
TAAGGTCAAGACCTACTTTTACACGGAGTACACACAATAATTACAAAAATGAAAATGAAG
GACACGGCAACATTGTCTGAAATTGCACTCCAGCCCAAAAAGATGCATCCGGCAAAATGC
CGGCCATCAGAACGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAATTCACCGTGTTA
GCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAACTCACCAGTTT
CAAGATTAAAACCTGGTGTCTAAATTTTCATGAGTTCCTGTTCCTTCTGCTTTTGGATAG
CTTCGATCTTTTTCATGTACTCGTCAGTAACTTTTTGTAGATCAGCGGACAAATCCTTCA
CGTTATCTTCAGAAAGTTTTTTTTCCTTCTCAAGCTTATCGTAAGCTTTGATGGCATCTC
TTCTTATGTTCCTTATAGCAACCTTGCCTTCTTCAGCTAATTTAGCAACAGTTTTTGCCA
ATTCCTTTCTGCGGTCAGAAGTCAATGGTGGAACAGTGACTCGAATCACTTCTCCATCAT
TGCTTGGTGTAA

consensusID : consensus_10397#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence

                              [CTGTAGCATTTTAATTCACGTGAGGAATATTGACAATGTAGCGGTAGAACAAGGATAAGGTCAAGACCTACTTTTACACGGAGTACACACAATAATTACAAAAATGAAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAGCCCAAAAAGATGCATCCGGCAAAATGCCGGCCATCAGAAAGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAATTCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAACTCACCAATTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAATTCCCGTTCCCTCTGCTTTTGGATACTCCATCTTTTTCCTGTTCTCCTCCAGTACTTTTTGTGAATTANGCGGGANAATCCCTCCNCNTTTCTTCCCAAAATTCCTTTCCTCNCCCAGCTTNTCGTAAGCTTTNAAAGNGNCNCTCCNTATNTTCCCTNAANACACCCTGGCTCNTCCNCCTATTTTACACAGNTTTTGCCATCCTTCCNCGCCCAATCNTGNNGAAATGACCAACCCCCCCCTTGTTGGTTNCCCCNNANNGAGCNCNTGTTT]

[+] EMBL BE229056             [CTGTAGCATTTTAATTCACGTGAGGAATATTGACAATGTAGCGGTAGAACAAGGATAAGGTCAAGACCTACTTTTACACGGAGTACACACAATAATTACAAAAATGAAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAGCCCAAAAAGATGCATCCGGCAAAATGCCGGCCATCAGAAAGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAATTCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAACTCACCAATTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAATTCCCGTTCCCTCTGCTTTTGGATACTCCATCTTTTTCCTGTTCTCCTCCAGTACTTTTTGTGAATTANGCGGGANAATCCCTCCNCNTTTCTTCCCAAAATTCCTTTCCTCNCCCAGCTTNTCGTAAGCTTTNAAAGNGNCNCTCCNTATNTTCCCTNAANACACCCTGGCTCNTCCNCCTATTTTACACAGNTTTTGCCATCCTTCCNCGCCCAATCNTGNNGAAATGACCAACCCCCCCCTTGTTGGTTNCCCCNNANNGAGCNCNTGTTT]




>consensus_10397#2
CTGTAGCATTTTAATTCACGTGAGGAATATTGACAATGTAGCGGTAGAACAAGGATAAGG
TCAAGACCTACTTTTACACGGAGTACACACAATAATTACAAAAATGAAAATGAAGGACAC
GGCAACATTGTCTGAAATTGCACTCCAGCCCAAAAAGATGCATCCGGCAAAATGCCGGCC
ATCAGAAAGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAATTCACCGTGTTAGCTGA
GGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAACTCACCAATTTCAAGA
TTAAAACCTGGTGTCTAAATTTTCATGAATTCCCGTTCCCTCTGCTTTTGGATACTCCAT
CTTTTTCCTGTTCTCCTCCAGTACTTTTTGTGAATTANGCGGGANAATCCCTCCNCNTTT
CTTCCCAAAATTCCTTTCCTCNCCCAGCTTNTCGTAAGCTTTNAAAGNGNCNCTCCNTAT
NTTCCCTNAANACACCCTGGCTCNTCCNCCTATTTTACACAGNTTTTGCCATCCTTCCNC
GCCCAATCNTGNNGAAATGACCAACCCCCCCCTTGTTGGTTNCCCCNNANNGAGCNCNTG
TTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10397#0      GGCGATAAATTCACAACTGTAGCATTTTAATTCCCGTGAGGAATATTGACAATGTAGCGG 60
consensus_10397#1      -----------CACAACTGTAGCATTTTAATTCACGTGAGGAATATTGACAATGTAGCGG 49
consensus_10397#2      ----------------CTGTAGCATTTTAATTCACGTGAGGAATATTGACAATGTAGCGG 44
                                       ***************** **************************

consensus_10397#0      TAGAACAAGGATAAGGTCAAGACCTACTTTTACACGGAGTACACACAATAATTACAAAAA 120
consensus_10397#1      TAGAACAAGGATAAGGTCAAGACCTACTTTTACACGGAGTACACACAATAATTACAAAAA 109
consensus_10397#2      TAGAACAAGGATAAGGTCAAGACCTACTTTTACACGGAGTACACACAATAATTACAAAAA 104
                       ************************************************************

consensus_10397#0      TGAAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAGCCCAAAAAGATGCATC 180
consensus_10397#1      TGAAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAGCCCAAAAAGATGCATC 169
consensus_10397#2      TGAAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAGCCCAAAAAGATGCATC 164
                       ************************************************************

consensus_10397#0      CGGCAAAATGCCGGCCATCAGAACGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAAT 240
consensus_10397#1      CGGCAAAATGCCGGCCATCAGAACGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAAT 229
consensus_10397#2      CGGCAAAATGCCGGCCATCAGAAAGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAAT 224
                       *********************** ************************************

consensus_10397#0      TCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAA 300
consensus_10397#1      TCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAA 289
consensus_10397#2      TCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAA 284
                       ************************************************************

consensus_10397#0      CTCACCAGTTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAGTTCCTGTTCCTTCTG 360
consensus_10397#1      CTCACCAGTTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAGTTCCTGTTCCTTCTG 349
consensus_10397#2      CTCACCAATTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAATTCCCGTTCCCTCTG 344
                       ******* ************************************ **** ***** ****

consensus_10397#0      CTTTTGGATAGCTTCGATCTTTTTCATGTACTCGTCAGTAACTTTTTGTAGATCAG-CGG 419
consensus_10397#1      CTTTTGGATAGCTTCGATCTTTTTCATGTACTCGTCAGTAACTTTTTGTAGATCAG-CGG 408
consensus_10397#2      CTTTTGGATA--CTCCATCTTTTTCCTGTTCTCCTCCAGTACTTTTTGTGAATTANGCGG 402
                       **********   ** ********* *** *** **    *********  ** *  ***

consensus_10397#0      ACAAATCCTTCACGTTATCTTCAGAAAGTTTTTTTTCTGAGAGGGTGAACCTTCTCAAGC 479
consensus_10397#1      ACAAATCCTTCACGTTATCTTCAGAAAGTTTTTTTTC-------------CTTCTCAAGC 455
consensus_10397#2      GANAATCCCTCCNCNTTTCTTCCCAAAATTCCTTTCC--------------TCNCCCAGC 448
                          ***** **    * *****  *** **  *** *              *   * ***

consensus_10397#0      TTATCGTAAGCTTTGATGGCATCTCTTCTTATGTTCCTTATAGCAACCTTGCCTTCTTCA 539
consensus_10397#1      TTATCGTAAGCTTTGATGGCATCTCTTCTTATGTTCCTTATAGCAACCTTGCCTTCTTCA 515
consensus_10397#2      TTNTCGTAAGCTTTNAAAGNGNCNCTCCNTATNTTCCCTNAANACACCCTGGCTCNTCCN 508
                       ** *********** *  *   * ** * *** **** *  *   *** ** **  * * 

consensus_10397#0      GCTAATTTAGCAACAGTTTTTGCCAATTCCTTTC-TGCGGTCAGAAGTCAATGGTGGAAC 598
consensus_10397#1      GCTAATTTAGCAACAGTTTTTGCCAATTCCTTTC-TGCGGTCAGAAGTCAATGGTGGAAC 574
consensus_10397#2      CCTATTTTAC--ACAGNTTTTGCCATCCTTCCNCGCCCAATCNTGNNGAAATGACCAACC 566
                        *** ****   **** ********        *   *  **       ****    * *

consensus_10397#0      AGTGACTCG--AATCACTTCTCCATCATTGCTTGGTGTA- 635
consensus_10397#1      AGTGACTCG--AATCACTTCTCCATCATTGCTTGGTGTAA 612
consensus_10397#2      CCCCCCTTGTTGGTTNCCCCNNANNGAGCNCNTGTTT--- 603
                            ** *    *  *  *      *   * ** *