cluster # 1040

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Oryza sativa
cluster # 1040 cluster # 1040 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1040#0 length = 780 sequences # 1

consensus_1040#1 length = 643 sequences # 1

consensusID : consensus_1040#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 780
fasta sequence

                              [AATCCTCGACACCATTTCAGCCCAAAACTTTAGGGCTTAGCAGGCCGGCCTGGTGCGGAGTGTCAAGTCCACGGCGGCGGCGGCGGCGGCGGCGCGACACGAGTGCATGACGACATGCTCCGGCGGGCGACCACCTCGCTGAGCCGCCGCGCCGCCTGCGCCACCCTGCTCCGCCGCCTCCCTCCCCGGCCGGCGACGACGCTTGAGCGCCACCCGCCGGTCCACCCCGGCCTCCGCCCCGCGGCGGCGGCGGCGGTGCAGCTTCGGCGCCTCAGCGACTTCGGCGTGTCGGTCCCCCGGCGCATGGCGCGGCGGAGTCCTCCCACCAGGCCCGAGGGTTACTCCACCTCCGACAGCGAGGCGGACGGGTGGTCCGTTAGCGAGGATGACGAGGAGGAGGTGGAGGAGGTTCAGTTGGAGCCCATGTCCGTCGATGACGTCGCGGCGGGGAAGGAGTGGGAGGGGTTCACATTGGAGTACGACCACGAGCACGACCTCGACGCCGATGATGAGGATGCCGCGGAGTAGGAGAAGAAGAAGTAGCGGCGCTGGAGGTGGGATTCTCTTCCTTTTTCTGCGTTGCACGCCAGGTGCTTGCGGAAAAGCCTGTGAGGCTTTACGCGTGCTTCAATAAACTCTTTAGCTGTTGATCACTGATCATGGATGCCCATTTGGGTCGAACCTGATTACCATTGTCCTAAACAATTTTAGTCAAAACCTAATTCTACTGCAGCATCGTGGGCATGCATTGTTGGTTTATTGGAATGGCGTTTCCACATT]

[+] EMBL AK107863             [AATCCTCGACACCATTTCAGCCCAAAACTTTAGGGCTTAGCAGGCCGGCCTGGTGCGGAGTGTCAAGTCCACGGCGGCGGCGGCGGCGGCGGCGCGACACGAGTGCATGACGACATGCTCCGGCGGGCGACCACCTCGCTGAGCCGCCGCGCCGCCTGCGCCACCCTGCTCCGCCGCCTCCCTCCCCGGCCGGCGACGACGCTTGAGCGCCACCCGCCGGTCCACCCCGGCCTCCGCCCCGCGGCGGCGGCGGCGGTGCAGCTTCGGCGCCTCAGCGACTTCGGCGTGTCGGTCCCCCGGCGCATGGCGCGGCGGAGTCCTCCCACCAGGCCCGAGGGTTACTCCACCTCCGACAGCGAGGCGGACGGGTGGTCCGTTAGCGAGGATGACGAGGAGGAGGTGGAGGAGGTTCAGTTGGAGCCCATGTCCGTCGATGACGTCGCGGCGGGGAAGGAGTGGGAGGGGTTCACATTGGAGTACGACCACGAGCACGACCTCGACGCCGATGATGAGGATGCCGCGGAGTAGGAGAAGAAGAAGTAGCGGCGCTGGAGGTGGGATTCTCTTCCTTTTTCTGCGTTGCACGCCAGGTGCTTGCGGAAAAGCCTGTGAGGCTTTACGCGTGCTTCAATAAACTCTTTAGCTGTTGATCACTGATCATGGATGCCCATTTGGGTCGAACCTGATTACCATTGTCCTAAACAATTTTAGTCAAAACCTAATTCTACTGCAGCATCGTGGGCATGCATTGTTGGTTTATTGGAATGGCGTTTCCACATT]




>consensus_1040#0
AATCCTCGACACCATTTCAGCCCAAAACTTTAGGGCTTAGCAGGCCGGCCTGGTGCGGAG
TGTCAAGTCCACGGCGGCGGCGGCGGCGGCGGCGCGACACGAGTGCATGACGACATGCTC
CGGCGGGCGACCACCTCGCTGAGCCGCCGCGCCGCCTGCGCCACCCTGCTCCGCCGCCTC
CCTCCCCGGCCGGCGACGACGCTTGAGCGCCACCCGCCGGTCCACCCCGGCCTCCGCCCC
GCGGCGGCGGCGGCGGTGCAGCTTCGGCGCCTCAGCGACTTCGGCGTGTCGGTCCCCCGG
CGCATGGCGCGGCGGAGTCCTCCCACCAGGCCCGAGGGTTACTCCACCTCCGACAGCGAG
GCGGACGGGTGGTCCGTTAGCGAGGATGACGAGGAGGAGGTGGAGGAGGTTCAGTTGGAG
CCCATGTCCGTCGATGACGTCGCGGCGGGGAAGGAGTGGGAGGGGTTCACATTGGAGTAC
GACCACGAGCACGACCTCGACGCCGATGATGAGGATGCCGCGGAGTAGGAGAAGAAGAAG
TAGCGGCGCTGGAGGTGGGATTCTCTTCCTTTTTCTGCGTTGCACGCCAGGTGCTTGCGG
AAAAGCCTGTGAGGCTTTACGCGTGCTTCAATAAACTCTTTAGCTGTTGATCACTGATCA
TGGATGCCCATTTGGGTCGAACCTGATTACCATTGTCCTAAACAATTTTAGTCAAAACCT
AATTCTACTGCAGCATCGTGGGCATGCATTGTTGGTTTATTGGAATGGCGTTTCCACATT

consensusID : consensus_1040#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 643
fasta sequence

                              [CCTGGTGCGGAGTGTCAAGTCCACGGCGGCGGCGGCGGCGGCGGCGCGACACGAGTGCACGACGACATGCTCCGGCGGGCGACCACCTCGCTGAGCCGCCGCGCCGCCTGCGCCACCCTGCTCCGCCGCCTCCCTCCCCGGCCGGCGACGACGCTTGAGCGCCACCCGCCGGTCCACCCCGGCCTCCGCCCCGCGGCGGTGCAGCTTCGGCGCCTCAGCGACTTCGGCGTGTCGGTCCCCCGGCGCATGGCGCGGCGGAGTCCTCCCACCAGGCCCGAGGGTTACTCCACCTCCGACAGCGAGGCGGACGGGTGGTCCGTTAGCGAGGATGACGAGGAGGAGGTGGAGGAGGTTCACCNCCACCCGATGCCCGACCAGTACGCCCTGGGGCGTACGGACTTACAGCTGGCGCCCCTCTCTTTCTCCCGCCGCCCCTATGGCCCGCCCCTTGCCTGTCCTGAGCGTGGCTTCTGCGCCACGGTTGGAGATGTCTCTCTCAGGCGTGAGGGGTCGTGCTGCCTGTCGAGCGTCTGGATCTCTATATGTCGGCCGCCAGTCGCCCATCTTGCGACTGGCGCTCTGCGCGGCTCTCGGTGCATCAAGGCCGCACTCCGCCGGGGCGCGCGGCAGACCGAGCGGGCGG]

[+] EMBL CA758399             [CCTGGTGCGGAGTGTCAAGTCCACGGCGGCGGCGGCGGCGGCGGCGCGACACGAGTGCACGACGACATGCTCCGGCGGGCGACCACCTCGCTGAGCCGCCGCGCCGCCTGCGCCACCCTGCTCCGCCGCCTCCCTCCCCGGCCGGCGACGACGCTTGAGCGCCACCCGCCGGTCCACCCCGGCCTCCGCCCCGCGGCGGTGCAGCTTCGGCGCCTCAGCGACTTCGGCGTGTCGGTCCCCCGGCGCATGGCGCGGCGGAGTCCTCCCACCAGGCCCGAGGGTTACTCCACCTCCGACAGCGAGGCGGACGGGTGGTCCGTTAGCGAGGATGACGAGGAGGAGGTGGAGGAGGTTCACCNCCACCCGATGCCCGACCAGTACGCCCTGGGGCGTACGGACTTACAGCTGGCGCCCCTCTCTTTCTCCCGCCGCCCCTATGGCCCGCCCCTTGCCTGTCCTGAGCGTGGCTTCTGCGCCACGGTTGGAGATGTCTCTCTCAGGCGTGAGGGGTCGTGCTGCCTGTCGAGCGTCTGGATCTCTATATGTCGGCCGCCAGTCGCCCATCTTGCGACTGGCGCTCTGCGCGGCTCTCGGTGCATCAAGGCCGCACTCCGCCGGGGCGCGCGGCAGACCGAGCGGGCGG]




>consensus_1040#1
CCTGGTGCGGAGTGTCAAGTCCACGGCGGCGGCGGCGGCGGCGGCGCGACACGAGTGCAC
GACGACATGCTCCGGCGGGCGACCACCTCGCTGAGCCGCCGCGCCGCCTGCGCCACCCTG
CTCCGCCGCCTCCCTCCCCGGCCGGCGACGACGCTTGAGCGCCACCCGCCGGTCCACCCC
GGCCTCCGCCCCGCGGCGGTGCAGCTTCGGCGCCTCAGCGACTTCGGCGTGTCGGTCCCC
CGGCGCATGGCGCGGCGGAGTCCTCCCACCAGGCCCGAGGGTTACTCCACCTCCGACAGC
GAGGCGGACGGGTGGTCCGTTAGCGAGGATGACGAGGAGGAGGTGGAGGAGGTTCACCNC
CACCCGATGCCCGACCAGTACGCCCTGGGGCGTACGGACTTACAGCTGGCGCCCCTCTCT
TTCTCCCGCCGCCCCTATGGCCCGCCCCTTGCCTGTCCTGAGCGTGGCTTCTGCGCCACG
GTTGGAGATGTCTCTCTCAGGCGTGAGGGGTCGTGCTGCCTGTCGAGCGTCTGGATCTCT
ATATGTCGGCCGCCAGTCGCCCATCTTGCGACTGGCGCTCTGCGCGGCTCTCGGTGCATC
AAGGCCGCACTCCGCCGGGGCGCGCGGCAGACCGAGCGGGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1040#0      AATCCTCGACACCATTTCAGCCCAAAACTTTAGGGCTTAGCAGGCCGGCCTGGTGCGGAG 60
consensus_1040#1      ------------------------------------------------CCTGGTGCGGAG 12
                                                                      ************

consensus_1040#0      TGTCAAGTCCACGGCGGCGGCGGCGGCGGCGGCGCGACACGAGTGCATGACGACATGCTC 120
consensus_1040#1      TGTCAAGTCCACGGCGGCGGCGGCGGCGGCGGCGCGACACGAGTGCACGACGACATGCTC 72
                      *********************************************** ************

consensus_1040#0      CGGCGGGCGACCACCTCGCTGAGCCGCCGCGCCGCCTGCGCCACCCTGCTCCGCCGCCTC 180
consensus_1040#1      CGGCGGGCGACCACCTCGCTGAGCCGCCGCGCCGCCTGCGCCACCCTGCTCCGCCGCCTC 132
                      ************************************************************

consensus_1040#0      CCTCCCCGGCCGGCGACGACGCTTGAGCGCCACCCGCCGGTCCACCCCGGCCTCCGCCCC 240
consensus_1040#1      CCTCCCCGGCCGGCGACGACGCTTGAGCGCCACCCGCCGGTCCACCCCGGCCTCCGCCCC 192
                      ************************************************************

consensus_1040#0      GCGGCGGCGGCGGCGGTGCAGCTTCGGCGCCTCAGCGACTTCGGCGTGTCGGTCCCCCGG 300
consensus_1040#1      GCGGCG---------GTGCAGCTTCGGCGCCTCAGCGACTTCGGCGTGTCGGTCCCCCGG 243
                      ******         *********************************************

consensus_1040#0      CGCATGGCGCGGCGGAGTCCTCCCACCAGGCCCGAGGGTTACTCCACCTCCGACAGCGAG 360
consensus_1040#1      CGCATGGCGCGGCGGAGTCCTCCCACCAGGCCCGAGGGTTACTCCACCTCCGACAGCGAG 303
                      ************************************************************

consensus_1040#0      GCGGACGGGTGGTCCGTTAGCGAGGATGACGAGGAGGAGGTGGAGGAGGTTCAGTTGGAG 420
consensus_1040#1      GCGGACGGGTGGTCCGTTAGCGAGGATGACGAGGAGGAGGTGGAGGAGGTTCACCNCCAC 363
                      *****************************************************     * 

consensus_1040#0      CCCATGTCCGTCGATGACGTCGCGGCGGGGAAGGAGTGGGAG---GGGTTCACATTGGAG 477
consensus_1040#1      CCGATGCCCGACCAGTACGCCCTGGGGCGTACGGACTTACAGCTGGCGCCCCTCTCTTTC 423
                      ** *** *** * *  *** *  ** * * * *** *   **   * *  *   *     

consensus_1040#0      TACGACCACGAGCACGACCT---CGACGCCGATGATGAGGATG-CCGCGGAGTAGGAGAA 533
consensus_1040#1      TCCCGCCGCCCCTATGGCCCGCCCCTTGCCTGTCCTGAGCGTGGCTTCTGCGCCACGGTT 483
                      * *  ** *    * * **    *   ***  *  ****  ** *  * * *     *  

consensus_1040#0      GAAGAAGTAGCGGCGCTGGAGGTGGGATTCTCTTCCTTTTTCTGCGTTGCACGCCAGGTG 593
consensus_1040#1      GGAGATGTCTCTCTCAGGCGTGAGGGGTCGTGCTGCCTGTCGAGCGT------CTGGATC 537
                      * *** **  *      *   * *** *  *  * * * *   ****      *  * * 

consensus_1040#0      CTTGCGGAAAAGCCTGTGAGGCTTTACGCGTGCTTCAATAAACTCTTTAGCTGTTGATCA 653
consensus_1040#1      TCTATATGTCGGCC-GCCAG---TCGCCCATCTTGCGACTGGCGCTCTG--CGCGGCTCT 591
                        *        *** *  **   *  * * *  * * *    * ** *    *  * ** 

consensus_1040#0      CTGATCATGGATGCCCATTTGGGTCGAACCTGATTACCATTGTCCTAAACAATTTTAGTC 713
consensus_1040#1      CGGTGCATCAAGGCCGCACTCCGCCGGGGCGCGCGGCAGACCGAGCGGGCGG-------- 643
                      * *  ***  * ***    *  * **   *      *            *          

consensus_1040#0      AAAACCTAATTCTACTGCAGCATCGTGGGCATGCATTGTTGGTTTATTGGAATGGCGTTT 773
consensus_1040#1      ------------------------------------------------------------
                                                                                  

consensus_1040#0      CCACATT 780
consensus_1040#1      -------